Phylogeography of the European rock rose Helianthemum nummularium s.l. (Cistaceae) : western richness and eastern poverty

Helianthemum nummularium s.l. is a young, morphologically diverse species distributed from western Europe to the Caucasus and the Southern Urals in the east. We analysed the rps16-trnK plastid intergenic spacer sequences from 85 localities covering most of the range of H. nummularium. Thirteen haplotypes were very unevenly distributed throughout the range of the species, and exhibited a strong phylogeographic signal. The results confirm range expansions of H. nummularium from Mediterranean refugia northwards, but also show the major role of eastern European (the Caucasus and the Southern Urals) refugia in rapid postglacial colonization of east, north and central Europe. The plastid haplotypes form distinct clades, one representing an eastern European lineage with few haplotypes and the other representing a western European lineage with many haplotypes. Parallel to this split in haplotype diversity is the pronounced differentiation in morphological variation displayed by the taxa found in west and east Europe. We discuss the role of topography in generating differences in morphological and genetic diversity between these two groups. We also discuss the taxonomical status of Helianthemum arcticum, which is regarded as an endangered local endemic of the Kola Peninsula. Helianthemum arcticum appears to represent an outlying peripheral population of H. nummularium preserved since the last postglacial major range expansion of this species, and bears the same plastid haplotype as the bulk of east and north European populations

Data from: Colonizing the wild west: low diversity of complete mitochondrial genomes in western North Pacific killer whales suggests a founder effect

In the North Pacific, fish-eating R-type ‘resident’ and mammal-eating T-type ‘transient’ killer whales do not interbreed and differ in ecology and behavior. Full-length mitochondrial genomes (about 16.4 kbp) were sequenced and assembled for 12 R-type and 14 T-type killer whale samples from different areas of the western North Pacific. All R-type individuals had the same haplotype, previously described for R-type killer whales from both eastern and western North Pacific. However, haplotype diversity of R-type killer whales was much lower in the western North Pacific than in the Aleutian Islands and the eastern North Pacific. T-type whales had three different haplotypes, including one previously undescribed. Haplotype diversity of T-type killer whales in the Okhotsk Sea was also much lower than in the Aleutian Islands and the eastern North Pacific. The highest haplotype diversity for both R- and T-type killer whales was observed in the Aleutian Islands. We discuss how the environmental conditions during the last glacial period might have shaped the history of killer whale populations in the North Pacific. Our results suggest the recent colonization or re-colonization of the western North Pacific by small groups of killer whales originating from the central or eastern North Pacific, possibly due to favorable environmental changes after the Last Glacial Maximum

Phylogeographic structure of the Common hamster (Cricetus cricetus L.): Late Pleistocene connections between Caucasus and Western European populations.

The Common hamster (Cricetus cricetus) is one of the most endangered mammals in Western and Central Europe. Its genetic diversity in Russia and Kazakhstan was investigated for the first time. The analysis of sequences of an mtDNA control region and cytochrome b gene revealed at least three phylogenetic lineages. Most of the species range (approximately 3 million km2), including central Russia, Crimea, the Ural region, and northern Kazakhstan), is inhabited by a single, well-supported phylogroup, E0. Phylogroup E1, previously reported from southeastern Poland and western Ukraine, was first described from Russia (Bryansk Province). E0 and E1 are sister lineages but both are monophyletic and separated by considerable genetic distance. Hamsters inhabiting Ciscaucasia represent a separate, distant phylogenetic lineage, named "Caucasus". It is sister to the North phylogroup from Western Europe and the contemporary phylogeography for this species is discussed considering new data. These data enabled us to develop a new hypothesis to propose that in the Late Pleistocene, the continuous range of the Common hamster in the northern Mediterranean extended from the central and southern parts of modern France to the Caucasus; however, its distribution was subsequently interrupted, likely because of climate change

Sample distribution map.

<p>Bryansk Province in Western Russia is indicated by a square, localities from the Ciscaucasian area by triangles, and the others by circles. In the breakout: Nalchik City is shown by dark blue, the Nalchik surrounds (restricted by 25-km radius) by light blue, Kislovodsk by red, and other localities by yellow.</p

Colonization history of the sable Martes zibellina (Mammalia, Carnivora) on the marginal peninsula and islands of northeastern Eurasia

We examined the nucleotide sequences of the mitochondrial NADH dehydrogenase subunit 2 gene (976 base pairs) for 279 individuals of the sable Martes zibellina (Carnivora, Mustelidae), derived from diverse areas throughout the regions of the Ural Mountains to the Russian Far East on the Eurasian continent and the peripheral peninsula (Kamchatka) and islands (Sakhalin, Hokkaido, and southern Kurils). The demographic history of the sable and its migration history to the eastern peripheral peninsula and islands were inferred using phylogeographic approaches. The analyses confirmed the previously found major lineages for the examined sables and further identified novel sublineages. Our data also support that a lineage, which is endemic to the eastern marginal islands (Sakhalin, Hokkaido, and southern Kurils), was produced by the demographic expansion of an ancestral lineage in the Eurasian continent. The most recent common ancestor of the Sakhalin, Hokkaido, and southern Kuril sables was estimated to exist during the Late Pleistocene. We also determined that another lineage exists on Sakhalin and is shared by the Far East Primorsky population. Our results indicate multiple migration events onto Sakhalin from the continent and suggest the importance of the formation of several straits to the distribution of sable lineages. Meanwhile, Kamchatka is dominated by a sole lineage which would also have followed the demographic expansion on the Eurasian continent. The Russian Far East was indicated as the source area for lineage diversifications; in this region, genetic diversity was relatively high, which is consistent with previous studies

Divergence time (kya) between the Common hamsters phylogenetic lineages as evaluated based on suggested (1) <i>Tscherskia triton and (Cricetulus migratorius + Allocricetulus eversmanni + Cricetus cricetus)</i> clade and (2) Pannonia and North-type lineages separation time.

<p>Divergence time (kya) between the Common hamsters phylogenetic lineages as evaluated based on suggested (1) <i>Tscherskia triton and (Cricetulus migratorius + Allocricetulus eversmanni + Cricetus cricetus)</i> clade and (2) Pannonia and North-type lineages separation time.</p

The hypothetical ranges of the Common hamster hyplogroups: Vertical hatching–Late Pleistocene Northern Mediterranean; horizontal hatching–south-western LGM refugium; filled with colors–modern (mid-20th century).

<p>Note: Atlantic ocean, Mediterranean, Black and Azov sea max. regression, Caspian sea max. transgression coast line shown with the dashed line.</p

List of samples localities.

<p>Point numbers correspond to <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0187527#pone.0187527.g001" target="_blank">Fig 1</a>.</p