Re-evaluation of individual diameter : height allometric models to improve biomass estimation of tropical trees

The first author was supported by the European Union under a IEF Marie-Curie Action.Accurate estimation of tree biomass is necessary to provide realistic values of the carbon stored in the terrestrial biosphere. A recognized source of errors in tree above-ground biomass (AGB) estimation is introduced when individual tree height values (H) are not directly measured but estimated from diameter at breast height (DBH) using allometric equations. In this paper we evaluate the performance of 12 alternative DBH : H equations and compare their effects on AGB estimation for three tropical forests that occur in contrasting climatic and altitudinal zones. We found that fitting a 3-parameter Weibull function using data collected locally generated the lowest errors and bias in H estimation, and that equations fitted to these data were more accurate than equations with parameters derived from the literature. For computing AGB, the introduced error values differed notably among DBH : H allometric equations, and in most cases showed a clear bias that resulted in either over- or under-estimation of AGB. Fitting the three-parameter Weibull function minimized errors in AGB estimates in our study and we recommend its widespread adoption for carbon stock estimation. We conclude that many previous studies are likely to present biased estimates of AGB due to the method of H estimation.Publisher PDFPeer reviewe

Silent Intravascular Lymphoma Initially Manifesting as a Unilateral Adrenal Incidentaloma

Intravascular large B-cell lymphoma (IVLBCL) is a rare subtype of malignant lymphoma. Although the involvement of adrenal glands in IVLBCL is often observed, primary adrenal IVLBCL is rare. Most reported cases of adrenal IVLBCL showed bilateral lesions resulting in rapidly progressive adrenal failure and poor prognosis. Here, we report a case of slowly progressive primary adrenal IVLBCL manifesting initially with unilateral adrenal incidentaloma. This case is a silent IVLBCL and shows that the enlargement of both adrenal glands can be followed

Reversible modulation of circadian time with chronophotopharmacology

The circadian clock controls daily rhythms of physiological processes. The presence of the clock mechanism throughout the body is hampering its local regulation by small molecules. A photoresponsive clock modulator would enable precise and reversible regulation of circadian rhythms using light as a bio-orthogonal external stimulus. Here we show, through judicious molecular design and state-of-the-art photopharmacological tools, the development of a visible light-responsive inhibitor of casein kinase I (CKI) that controls the period and phase of cellular and tissue circadian rhythms in a reversible manner. The dark isomer of photoswitchable inhibitor 9 exhibits almost identical affinity towards the CKIα and CKIδ isoforms, while upon irradiation it becomes more selective towards CKIδ, revealing the higher importance of CKIδ in the period regulation. Our studies enable long-term regulation of CKI activity in cells for multiple days and show the reversible modulation of circadian rhythms with a several hour period and phase change through chronophotopharmacology

Studies on Stem Canker of Roses Caused by Coniotherium fuckelii Saccardo

バラ枝枯病菌の柄胞子の発芽適温は30℃, 菌糸発育の適温は28℃附近に存在し, 柄子殻の形成は10〜35℃の範囲で行われた.菌糸発育はpH5.2〜8.7附近で良好であった.また柄胞子は蔗糖, 果糖, マンノース, ガラクトース, アスパラギン, クエン酸およびリンゴ酸によって促進された.病原菌のバラ枝への侵入は剪定による切口から容易に行われ, また刺の部分からも侵入されるが, 健全表皮を貫通しては侵入がないようである.病斑の拡大は剪定の部位によって影響され, 芽と芽の中間で行われると, 枝の太さによって拡大程度が異なるが, 芽の直上で切断されると, 枝の太さの影響はない.健全な枝では剪定後20〜30日において, 木栓形成層が形成されるが, 病枝では形成層に発達する前に病原菌が侵入し, 菌糸が伸長する.病原菌の菌糸の発育は, チオファネートメチル剤およびベノミレ剤によって抑制され, また, 同剤を切断面に塗布することによって, 病原菌の侵入が防止された.Optimum temperatures for pycnospore germination and mycelial growth of the causal fungus were 30℃ and 28℃, respectively. Optimum pH for mycelial growth of the fungus was 6.8. Pycnidium formation occurred at temperatures ranging from 10℃ to 35℃. Pycnospore germination was accelerated by sucrose, fructose, mannose, galactose, asparagenic acid, citric acid, and malic acid. Infection of the causal fungus to rose plant was occurred through the wound by pruning and thorn, but it was not occurred through healthy cuticle. Infection of the fungus to the stems through the wound was decreased 20 to 30 days after pruning. When the pruning was made at the position between bud and bud, development of canker was influenced by thickness of the stems. But when prunned just above strong bud the development of canker was not influenced by thickness of the stems. Cork cambium was formed in the tissues of healthy stems 20 to 30 days after pruning and it seemed to be effective in preventing infection of the fungus to the stems. But infection and mycelial growth of the fungus were occurred before development of cork cambium in the tissues of the diseased stems. Mycelial growth of the fungus in potato agar was inhibited by benomyl and thiophanate-methyl. These fungicides were effective in preventing infection of the fungus to the stems through the wound by pruning

The role of functional uniqueness and spatial aggregation in explaining rarity in trees

Aim: Determining the drivers of species rarity is fundamental for understanding and conserving biodiversity. Rarity of a given species within its community may arise due to exclusion by other ecologically similar species. Conversely, rare species may occupy habitats that are rare in the landscape or they may be ill-suited to all available habitats. The first mechanism would lead to common and rare species occupying similar ecological space defined by functional traits. The second mechanism would result in common and rare species occupying dissimilar ecological space and spatial aggregation of rare species, either because they are specialists in rare habitats or because rare species tend to be dispersal limited. Here, we quantified the contribution of locally rare species to community functional richness and the spatial aggregation of species across tree communities world-wide to address these hypotheses. Location: Asia and the Americas. Time period: 2002 to 2012 (period that considers the censuses for the plots used). Major taxa studied: Angiosperm and Gymnosperm trees. Methods: We compiled a dataset of functional traits from all the species present in eight tree plots around the world to evaluate the contribution of locally rare species to tree community functional richness using multi- and univariate approaches. We also quantified the spatial aggregation of individuals within species at several spatial scales as it relates to abundance. Results: Locally rare tree species in temperate and tropical forests tended to be functionally unique and are consistently spatially clustered. Furthermore, there is no evidence that this pattern is driven by pioneer species being locally rare. Main conclusions: This evidence shows that locally rare tree species disproportionately contribute to community functional richness, and we can therefore reject the hypothesis that locally rare species are suppressed by ecologically similar, but numerically dominant, species. Rather, locally rare species are likely to be specialists on spatially rare habitats or they may be ill-suited to the locally available environments

The Yeast Tor Signaling Pathway Is Involved in G2/M Transition via Polo-Kinase

The target of rapamycin (Tor) protein plays central roles in cell growth. Rapamycin inhibits cell growth and promotes cell cycle arrest at G1 (G0). However, little is known about whether Tor is involved in other stages of the cell division cycle. Here we report that the rapamycin-sensitive Tor complex 1 (TORC1) is involved in G2/M transition in S. cerevisiae. Strains carrying a temperature-sensitive allele of KOG1 (kog1-105) encoding an essential component of TORC1, as well as yeast cell treated with rapamycin show mitotic delay with prolonged G2. Overexpression of Cdc5, the yeast polo-like kinase, rescues the growth defect of kog1-105, and in turn, Cdc5 activity is attenuated in kog1-105 cells. The TORC1-Type2A phosphatase pathway mediates nucleocytoplasmic transport of Cdc5, which is prerequisite for its proper localization and function. The C-terminal polo-box domain of Cdc5 has an inhibitory role in nuclear translocation. Taken together, our results indicate a novel function of Tor in the regulation of cell cycle and proliferation

Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

With the severe acute respiratory syndrome epidemic of 2003 and renewed attention on avian influenza viral pandemics, new surveillance systems are needed for the earlier detection of emerging infectious diseases. We applied a “next-generation” parallel sequencing platform for viral detection in nasopharyngeal and fecal samples collected during seasonal influenza virus (Flu) infections and norovirus outbreaks from 2005 to 2007 in Osaka, Japan. Random RT-PCR was performed to amplify RNA extracted from 0.1–0.25 ml of nasopharyngeal aspirates (N = 3) and fecal specimens (N = 5), and more than 10 µg of cDNA was synthesized. Unbiased high-throughput sequencing of these 8 samples yielded 15,298–32,335 (average 24,738) reads in a single 7.5 h run. In nasopharyngeal samples, although whole genome analysis was not available because the majority (>90%) of reads were host genome–derived, 20–460 Flu-reads were detected, which was sufficient for subtype identification. In fecal samples, bacteria and host cells were removed by centrifugation, resulting in gain of 484–15,260 reads of norovirus sequence (78–98% of the whole genome was covered), except for one specimen that was under-detectable by RT-PCR. These results suggest that our unbiased high-throughput sequencing approach is useful for directly detecting pathogenic viruses without advance genetic information. Although its cost and technological availability make it unlikely that this system will very soon be the diagnostic standard worldwide, this system could be useful for the earlier discovery of novel emerging viruses and bioterrorism, which are difficult to detect with conventional procedures

Height-diameter allometry of tropical forest trees

Tropical tree height-diameter (H:D) relationships may vary by forest type and region making large-scale estimates of above-ground biomass subject to bias if they ignore these differences in stem allometry. We have therefore developed a new global tropical forest database consisting of 39 955 concurrent H and D measurements encompassing 283 sites in 22 tropical countries. Utilising this database, our objectives were: 1. to determine if H:D relationships differ by geographic region and forest type (wet to dry forests, including zones of tension where forest and savanna overlap). 2. to ascertain if the H:D relationship is modulated by climate and/or forest structural characteristics (e.g. stand-level basal area, A). 3. to develop H:D allometric equations and evaluate biases to reduce error in future local-to-global estimates of tropical forest biomass. Annual precipitation coefficient of variation (PV), dry season length (SD), and mean annual air temperature (TA) emerged as key drivers of variation in H:D relationships at the pantropical and region scales. Vegetation structure also played a role with trees in forests of a high A being, on average, taller at any given D. After the effects of environment and forest structure are taken into account, two main regional groups can be identified. Forests in Asia, Africa and the Guyana Shield all have, on average, similar H:D relationships, but with trees in the forests of much of the Amazon Basin and tropical Australia typically being shorter at any given D than their counterparts elsewhere. The region-environment-structure model with the lowest Akaike's information criterion and lowest deviation estimated stand-level H across all plots to within amedian −2.7 to 0.9% of the true value. Some of the plot-to-plot variability in H:D relationships not accounted for by this model could be attributed to variations in soil physical conditions. Other things being equal, trees tend to be more slender in the absence of soil physical constraints, especially at smaller D. Pantropical and continental-level models provided less robust estimates of H, especially when the roles of climate and stand structure in modulating H:D allometry were not simultaneously taken into account. © 2011 Author(s)