Book Review

Published and distributed 1995 by the Expedition AdvisoryCenlre, Royal Geographic Society, 1 Kensington Gore,London, SW7 2AR126 pagesPrice: £8.50 (softcover)ISBN 0-907649-68-8S. Afr. J. Zool. 1997,32(4

Scaling function for the noisy Burgers equation in the soliton approximation

We derive the scaling function for the one dimensional noisy Burgers equation in the two-soliton approximation within the weak noise canonical phase space approach. The result is in agreement with an earlier heuristic expression and exhibits the correct scaling properties. The calculation presents the first step in a many body treatment of the correlations in the Burgers equation.Comment: Replacement: Several corrections, 4 pages, Revtex file, 3 figures. To appear in Europhysics Letter

Unusual features of pomoviral RNA movement

This work is partially supported by the Scottish Government’s Rural and Environment Science and Analytical Services (RESAS) DivisionPotato mop-top pomovirus (PMTV) is one of a few viruses that can move systemically in plants in the absence of the capsid protein (CP). Pomoviruses encode the triple gene block genetic module of movement proteins (TGB 1, 2, and 3) and recent research suggests that PMTV RNA is transported either as ribonucleoprotein (RNP) complexes containing TGB1 or encapsidated in virions containing TGB1. Furthermore, there are different requirements for local or systemic (long-distance) movement. Research suggests that nucleolar passage of TGB1 may be important for the long-distance movement of both RNP and virions. Moreover, and uniquely, the long-distance movement of the CP-encoding RNA requires expression of both major and minor CP subunits and is inhibited when only the major CP sub unit is expressed. This paper reviews pomovirus research and presents a current model for RNA movement.Publisher PDFPeer reviewe

Finding the way forward for forensic science in the US:a commentary on the PCAST report

A recent report by the US President’s Council of Advisors on Science and Technology (PCAST) [1] has made a number of recommendations for the future development of forensic science. Whereas we all agree that there is much need for change, we find that the PCAST report recommendations are founded on serious misunderstandings. We explain the traditional forensic paradigms of match and identification and the more recent foundation of the logical approach to evidence evaluation. This forms the groundwork for exposing many sources of confusion in the PCAST report. We explain how the notion of treating the scientist as a black box and the assignment of evidential weight through error rates is overly restrictive and misconceived. Our own view sees inferential logic, the development of calibrated knowledge and understanding of scientists as the core of the advance of the profession

Impact of network sectorisation on water quality management

The sectorisation of water supply networks includes the permanent closure of valves in order to achieve a cost-effective leakage management and simplify pressure control. The impact of networks sectorisation, also known as District Metered Areas (DMAs), on water quality and discolouration has not been extensively studied and it remains unknown. In addition, hydraulic variables used in the literature for assessing the likelihood of potential discolouration are limited and inconclusive. This paper investigates a methodology to evaluate the impact of networks sectorisation (DMAs) on water quality and the likelihood of discolouration incidents. The methodology utilises a set of surrogate hydraulic variables and an analysis of the hydraulic condition in pipes with historic discolouration complaints. The proposed methodology has been applied to a large-scale water supply network, with and without sectors, in order to assess the potential impact of DMAs on water quality. The results demonstrate that the sectorisation of water supply networks (DMAs) could compromise the overall water quality and increase the likelihood of discolouration incidents. The results of this study and the proposed surrogate hydraulic variables facilitate the formulation of optimisation problems for the re-design and control of water supply networks with sectorised topologies

Human papillomavirus E2 regulates SRSF3 (SRp20) to promote capsid protein expression in infected differentiated keratinocytes

The human papillomavirus (HPV) life cycle is tightly linked to differentiation of the infected epithelial cell suggesting a sophisticated interplay between host cell metabolism and virus replication. Previously we demonstrated in differentiated keratinocytes in vitro and in vivo that HPV16 infection caused increased levels of the cellular SR splicing factors (SRSFs) SRSF1 (ASF/SF2), SRSF2 (SC35) and SRSF3 (SRp20). Moreover, the viral E2 transcription and replication factor that is expressed at high levels in differentiating keratinocytes could bind and control activity of the SRSF1 gene promoter. Here we reveal that E2 proteins of HPV16 and HPV31 control expression of SRSFs 1, 2 and 3 in a differentiation-dependent manner. E2 has the greatest trans-activation effect on expression of SRSF3. siRNA depletion experiments in two different models of the HPV16 life cycle (W12E and NIKS16) and one model of the HPV31 life cycle (CIN612-9E) revealed that only SRSF3 contributed significantly to regulation of late events in the virus life cycle. Increased levels of SRSF3 are required for L1 mRNA and capsid protein expression. Capsid protein expression was regulated specifically by SRSF3 and appeared independent of other SRSFs. Taken together these data suggest a significant role of the HPV E2 protein in regulating late events in the HPV life cycle through transcriptional regulation of SRSF3 expression. IMPORTANCE Human papillomavirus replication is accomplished in concert with differentiation of the infected epithelium. Virus capsid protein expression is confined to the upper epithelial layers so as to avoid immune detection. In this study we demonstrate that the viral E2 transcription factor activates the promoter of the cellular SRSF3 RNA processing factor. SRSF3 is required for expression of the E4̂L1 mRNA and so controls expression of the HPV L1 capsid protein. Thus we reveal a new dimension of virus-host interaction crucial for production of infectious virus. SRSF proteins are known drug targets. Therefore, this study provides an excellent basis for developing strategies to regulate capsid protein production in the infected epithelium and production of new virions

FirstLight: Pluggable Optical Interconnect Technologies for Polymeric Electro-Optical Printed Circuit Boards in Data Centers

The protocol data rate governing data storage devices will increase to over 12 Gb/s by 2013 thereby imposing unmanageable cost and performance burdens on future digital data storage systems. The resulting performance bottleneck can be substantially reduced by conveying high-speed data optically instead of electronically. A novel active pluggable 82.5 Gb/s aggregate bit rate optical connector technology, the design and fabrication of a compact electro-optical printed circuit board to meet exacting specifications, and a method for low cost, high precision, passive optical assembly are presented. A demonstration platform was constructed to assess the viability of embedded electro-optical midplane technology in such systems including the first ever demonstration of a pluggable active optical waveguide printed circuit board connector. High-speed optical data transfer at 10.3125 Gb/s was demonstrated through a complex polymer waveguide interconnect layer embedded into a 262 mm × 240 mm × 4.3 mm electro-optical midplane. Bit error rates of less than 10-12 and optical losses as low as 6 dB were demonstrated through nine multimode polymer wave guides with an aggregate data bandwidth of 92.8125 Gb/s

Extragalactic infrared spectroscopy

The spectra of galaxies in the near infrared atmospheric transmission windows are explored. Emission lines were detected due to molecular hydrogen, atomic hydrogen recombination lines, a line attributed to FEII, and a broad CO absorption feature. Lines due to H2 and FEII are especially strong in interacting and merging galaxies, but they were also detected in Seyferts and normal spirals. These lines appear to be shock excited. Multi-aperture measurements show that they emanate from regions as large as 15 kpc. It is argued that starbursts provide the most plausible and consistent model for the excitation of these lines, but the changes of relative line intensity of various species with aperture suggest that other excitation mechanisms are also operating in the outer regions of these galaxies