Polarized cell motility induces hydrogen peroxide to inhibit cofilin via cysteine oxidation

Mesenchymal cell motility is driven by polarized actin polymerization [1]. Signals at the leading edge recruit actin polymerization machinery to promote membrane protrusion, while matrix adhesion generates tractive force to propel forward movement. To work effectively, cell motility is regulated by a complex network of signaling events that affect protein activity and localization. H2O2 has an important role as a diffusible second messenger [2], and mediates its effects through oxidation of cysteine thiols. One cell activity influenced by H2O2 is motility [3]. However, a lack of sensitive and H2O2-specific probes for measurements in live cells has not allowed for direct observation of H2O2 accumulation in migrating cells or protrusions. In addition, the identities of proteins oxidized by H2O2 that contribute to actin dynamics and cell motility have not been characterized. We now show, as determined by fluorescence lifetime imaging microscopy, that motile cells generate H2O2 at membranes and cell protrusions and that H2O2 inhibits cofilin activity through oxidation of cysteines 139 (C139) and 147 (C147). Molecular modeling suggests that C139 oxidation would sterically hinder actin association, while the increased negative charge of oxidized C147 would lead to electrostatic repulsion of the opposite negatively charged surface. Expression of oxidation-resistant cofilin impairs cell spreading, adhesion, and directional migration. These findings indicate that H2O2 production contributes to polarized cell motility through localized cofilin inhibition and that there are additional proteins oxidized during cell migration that might have similar roles

Analogue experiments on releasing and restraining bends and their application to the study of the Barents Shear Margin

The Barents Shear Margin separates the Svalbard and Barents Sea from the North Atlantic. During the break-up of the North Atlantic the plate tectonic configuration was characterized by sequential dextral shear, extension, and eventually contraction and inversion. This generated a complex zone of deformation that contains several structural families of overlapping and reactivated structures. A series of crustal-scale analogue experiments, utilizing a scaled and stratified sand-silicon polymer sequence, was used in the study of the structural evolution of the shear margin. The most significant observations for interpreting the structural configuration of the Barents Shear Margin are the following. Prominent early-stage positive structural elements (e.g. folds, push-ups) interacted with younger (e.g. inversion) structures and contributed to a hybrid final structural pattern. Several structural features that were initiated during the early (dextral shear) stage became overprinted and obliterated in the subsequent stages. All master faults, pull-apart basins, and extensional shear duplexes initiated during the shear stage quickly became linked in the extension stage, generating a connected basin system along the entire shear margin at the stage of maximum extension. The fold pattern was generated during the terminal stage (contraction-inversion became dominant in the basin areas) and was characterized by fold axes striking parallel to the basin margins. These folds, however, strongly affected the shallow intra-basin layers. The experiments reproduced the geometry and positions of the major basins and relations between structural elements (fault-and-fold systems) as observed along and adjacent to the Barents Shear Margin. This supports the present structural model for the shear margin

PIAS1 interacts with FLASH and enhances its co-activation of c-Myb

<p>Abstract</p> <p>Background</p> <p>FLASH is a huge nuclear protein involved in various cellular functions such as apoptosis signalling, NF-κB activation, S-phase regulation, processing of histone pre-mRNAs, and co-regulation of transcription. Recently, we identified FLASH as a co-activator of the transcription factor c-Myb and found FLASH to be tightly associated with active transcription foci. As a huge multifunctional protein, FLASH is expected to have many interaction partners, some which may shed light on its function as a transcriptional regulator.</p> <p>Results</p> <p>To find additional FLASH-associated proteins, we performed a yeast two-hybrid (Y2H) screening with FLASH as bait and identified the SUMO E3 ligase PIAS1 as an interaction partner. The association appears to involve two distinct interaction surfaces in FLASH. We verified the interaction by Y2H-mating, GST pulldowns, co-IP and ChIP. FLASH and PIAS1 were found to co-localize in nuclear speckles. Functional assays revealed that PIAS1 enhances the intrinsic transcriptional activity of FLASH in a RING finger-dependent manner. Furthermore, PIAS1 also augments the specific activity of c-Myb, and cooperates with FLASH to further co-activate c-Myb. The three proteins, FLASH, PIAS1, and c-Myb, are all co-localized with active RNA polymerase II foci, resembling transcription factories.</p> <p>Conclusions</p> <p>We conclude that PIAS1 is a common partner for two cancer-related nuclear factors, c-Myb and FLASH. Our results point to a functional cooperation between FLASH and PIAS1 in the enhancement of c-Myb activity in active nuclear foci.</p

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.

Tobacco and alcohol use are leading causes of mortality that influence risk for many complex diseases and disorders1. They are heritable2,3 and etiologically related4,5 behaviors that have been resistant to gene discovery efforts6-11. In sample sizes up to 1.2 million individuals, we discovered 566 genetic variants in 406 loci associated with multiple stages of tobacco use (initiation, cessation, and heaviness) as well as alcohol use, with 150 loci evidencing pleiotropic association. Smoking phenotypes were positively genetically correlated with many health conditions, whereas alcohol use was negatively correlated with these conditions, such that increased genetic risk for alcohol use is associated with lower disease risk. We report evidence for the involvement of many systems in tobacco and alcohol use, including genes involved in nicotinic, dopaminergic, and glutamatergic neurotransmission. The results provide a solid starting point to evaluate the effects of these loci in model organisms and more precise substance use measures

The Relationship Between Anthropometric Measures, Blood Gases, and Lung Function in Morbidly Obese White Subjects

# The Author(s) 2010. This article is published with open access at Springerlink.com Background Obesity may cause adverse effects on the respiratory system. The main purpose of this study was to investigate how various measures of obesity are related to arterial blood gases and pulmonary function. Methods This is a cross-sectional study of consecutive morbidly obese patients with normal lung function. Blood gas samples were taken from the radial artery after 5 min of rest with subjects sitting upright. Lung function measurements included dynamic spirometry, static lung volumes, and gas diffusing capacity. Results The 149 patients (77 % women) had a mean (SD) age of 43 years (11 years) and BMI of 45.0 kg/m 2 (6.3 kg/m 2). The mean expiratory reserve volume (ERV) was less than half (49%) of predicted value, whilst most other lung function values were within predicted range. Forty-two patients had an abnormally low pO2 value (&lt;10.7 kPa [80 mmHg]), while eight patients had a high pCO2 value (&gt;6.0 kPa [45 mmHg])

Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates

When plastids are transferred between eukaryote lineages through series of endosymbiosis, their environment changes dramatically. Comparison of dinoflagellate plastids that originated from different algal groups has revealed convergent evolution, suggesting that the host environment mainly influences the evolution of the newly acquired organelle. Recently the genome from the anomalously pigmented dinoflagellate Karlodinium veneficum plastid was uncovered as a conventional chromosome. To determine if this haptophyte-derived plastid contains additional chromosomal fragments that resemble the mini-circles of the peridin-containing plastids, we have investigated its genome by in-depth sequencing using 454 pyrosequencing technology, PCR and clone library analysis. Sequence analyses show several genes with significantly higher copy numbers than present in the chromosome. These genes are most likely extrachromosomal fragments, and the ones with highest copy numbers include genes encoding the chaperone DnaK(Hsp70), the rubisco large subunit (rbcL), and two tRNAs (trnE and trnM). In addition, some photosystem genes such as psaB, psaA, psbB and psbD are overrepresented. Most of the dnaK and rbcL sequences are found as shortened or fragmented gene sequences, typically missing the 3′-terminal portion. Both dnaK and rbcL are associated with a common sequence element consisting of about 120 bp of highly conserved AT-rich sequence followed by a trnE gene, possibly serving as a control region. Decatenation assays and Southern blot analysis indicate that the extrachromosomal plastid sequences do not have the same organization or lengths as the minicircles of the peridinin dinoflagellates. The fragmentation of the haptophyte-derived plastid genome K. veneficum suggests that it is likely a sign of a host-driven process shaping the plastid genomes of dinoflagellates

Winter extra-tropical cyclones as a driver of seabird survival: variation between and within Common eider populations

Mid-latitude atmospheric variability is mainly driven by a type of cyclone, the extra-tropical cyclones (ETCs) that have a primary role in determining local weather and its variation, inducing strong winds, precipitation, and temperature changes. ETCs have a broad range of intensities, from benign to extreme, and their paths, frequency and intensity may change with global warming. However, how ETCs, and cyclones in general, currently affect marine wildlife is poorly studied and remains substantially unexplored. Indeed, only few studies have examined the impact of tropical cyclones, another kind of cyclones, on the temporal variation of seabird survival and no study has explored the potential impact of ETCs, although the latters could be potential mechanisms behind some winter NAO-survival relationships highlighted in previous studies. A fortiori, very little has been done to study the potential heterogeneity within or between populations with different winter migratory tactics and undergoing different winter environmental conditions. We used capture-mark-recapture (CMR) data sets collected in two arctic (northern Canada and Svalbard) and one subarctic (northern Norway) populations of Common eider, Somateria mollissima, over periods of 19, 16 and 30 years, respectively and corresponding datasets of winter ETCs in each wintering area to explore their link with the temporal variation of adult annual survival. We found significant and negative correlations between ETC activity and eider survival but different mechanisms seemed to be involved among the studied populations and could explain part of observed winter NAO effects. The number of ETCs, extreme or not, was directly linked to survival in the Canadian population, whereas the wind speed of the strongest ETC impacted adult survival with time lags for the Svalbard and northern Norway eider populations. We suggest that climatic shelters found on the wintering grounds, such as fjords, could provide natural protection and partly explain inter-population heterogeneity

A functional SUMO-interacting motif in the transactivation domain of c-Myb regulates its myeloid transforming ability

c-Myb is an essential hematopoietic transcription factor that controls proliferation and differentiation of progenitors during blood cell development. Whereas sumoylation of the C-terminal regulatory domain (CRD) is known to have a major impact on the activity of c-Myb, no role for noncovalent binding of small ubiquitin-like modifier (SUMO) to c-Myb has been described. Based on the consensus SUMO-interacting motif (SIM), we identified and examined putative SIMs in human c-Myb. Interaction and reporter assays showed that the SIM in the in the transactivation domain of c-Myb (V 267 NIV) is functional. This motif is necessary for c-Myb to be able to interact noncovalently with SUMO, preferentially SUMO2/3. Destroying the SUMO-binding properties by mutation resulted in a large increase in the transactivation potential of c-Myb. Mutational analysis and overexpression of conjugation-defective SUMO argued against intramolecular repression caused by sumoylated CRD and in favor of SUMO-dependent repression in trans. Using both a myeloid cell line-based assay and a primary hematopoietic cell assay, we addressed the transforming abilities of SUMO binding and conjugation mutants. Interestingly, only loss of SUMO binding, and not SUMO conjugation, enhanced the myeloid transformational potential of c-Myb. c-Myb with the SIM mutated conferred a higher proliferative ability than the wild-type and caused an effective differentiation block. This establishes SUMO binding as a mechanism involved in modulating the transactivation activity of c-Myb, and responsible for keeping the transforming potential of the oncoprotein in check

A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease

Late-onset Alzheimer’s disease is a prevalent age-related polygenic disease that accounts for 50–70% of dementia cases. Currently, only a fraction of the genetic variants underlying Alzheimer’s disease have been identified. Here we show that increased sample sizes allowed identification of seven previously unidentified genetic loci contributing to Alzheimer’s disease. This study highlights microglia, immune cells and protein catabolism as relevant to late-onset Alzheimer’s disease, while identifying and prioritizing previously unidentified genes of potential interest. We anticipate that these results can be included in larger meta-analyses of Alzheimer’s disease to identify further genetic variants that contribute to Alzheimer’s pathology