Pinning and depinning of a classic quasi-one-dimensional Wigner crystal in the presence of a constriction

We studied the dynamics of a quasi-one-dimensional chain-like system of charged particles at low temperature, interacting through a screened Coulomb potential in the presence of a local constriction. The response of the system when an external electric field is applied was investigated. We performed Langevin molecular dynamics simulations for different values of the driving force and for different temperatures. We found that the friction together with the constriction pins the particles up to a critical value of the driving force. The system can depin \emph{elastically} or \emph{quasi-elastically} depending on the strength of the constriction. The elastic (quasi-elastic) depinning is characterized by a critical exponent $\beta\sim0.66$ ($\beta\sim0.95$). The dc conductivity is zero in the pinned regime, it has non-ohmic characteristics after the activation of the motion and then it is constant. Furthermore, the dependence of the conductivity with temperature and strength of the constriction was investigated in detail. We found interesting differences between the single and the multi-chain regimes as the temperature is increased.Comment: 18 pages, 16 figures, accepted for publication in PR

Generalized Drude model: Unification of ballistic and diffusive electron transport

For electron transport in parallel-plane semiconducting structures, a model is developed that unifies ballistic and diffusive transport and thus generalizes the Drude model. The unified model is valid for arbitrary magnitude of the mean free path and arbitrary shape of the conduction band edge profile. Universal formulas are obtained for the current-voltage characteristic in the nondegenerate case and for the zero-bias conductance in the degenerate case, which describe in a transparent manner the interplay of ballistic and diffusive transport. The semiclassical approach is adopted, but quantum corrections allowing for tunneling are included. Examples are considered, in particular the case of chains of grains in polycrystalline or microcrystalline semiconductors with grain size comparable to, or smaller than, the mean free path. Substantial deviations of the results of the unified model from those of the ballistic thermionic-emission model and of the drift-diffusion model are found. The formulation of the model is one-dimensional, but it is argued that its results should not differ substantially from those of a fully three-dimensional treatment.Comment: 14 pages, 5 figures, REVTEX file, to appear in J. Phys.: Condens. Matte

Directional statistics and filtering using libDirectional

In this paper, we present libDirectional, a MATLAB library for directional statistics and directional estimation. It supports a variety of commonly used distributions on the unit circle, such as the von Mises, wrapped normal, and wrapped Cauchy distributions. Furthermore, various distributions on higher-dimensional manifolds such as the unit hypersphere and the hypertorus are available. Based on these distributions, several recursive filtering algorithms in libDirectional allow estimation on these manifolds. The functionality is implemented in a clear, well-documented, and object-oriented structure that is both easy to use and easy to extend

„Rendering Endangered Lexicons Interoperable through Standards Harmonization”: The RELISH Project

The RELISH project promotes language-oriented research by addressing a two-pronged problem: (1) the lack of harmonization between digital standards for lexical information in Europe and America, and (2) the lack of interoperability among existing lexicons of endangered languages, in particular those created with the Shoebox/Toolbox lexicon building software. The cooperation partners in the RELISH project are the University of Frankfurt (FRA), the Max Planck Institute for Psycholinguistics (MPI Nijmegen), and Eastern Michigan University, the host of the Linguist List (ILIT). The project aims at harmonizing key European and American digital standards whose divergence has hitherto impeded international collaboration on language technology for resource creation and analysis, as well as web services for archive access. Focusing on several lexicons of endangered languages, the project will establish a unified way of referencing lexicon structure and linguistic concepts, and develop a procedure for migrating these heterogeneous lexicons to a standards-compliant format. Once developed, the procedure will be generalizable to the large store of lexical resources involved in the LEGO and DoBeS projects

Optical activity induced by curvature in a gravitational pp-wave background

We study optical activity induced by curvature. The optical activity model we present has two phenomenological gyration parameters, within which we analyze three model cases, namely, an exactly integrable model, the Landau-Lifshitz model and the Fedorov model, these latter two are solved in the short wavelength approximation. The model background is a gravitational pp-wave. The solutions show that the optical activity induced by curvature leads to Faraday rotation.Comment: 16 pages, late

Properties of Physical Systems: Transient Singularities on Borders and Surface Transitive Zones

Certain alternative properties of physical systems are describable by supports of arguments of response functions (e.g. light cone, borders of media) and expressed by projectors; corresponding equations of restraints lead to dispersion relations, theorems of counting, etc. As supports are measurable, their absolutely strict borders contradict the spirit of quantum theory and their quantum evolution leading to appearance of subtractions or certain needed flattening would be considered. Flattening of projectors introduce transitive zones that can be examined as a specification of adiabatic hypothesis or the Bogoliubov regulatory function in QED. For demonstration of their possibilities the phenomena of refraction and reflection of electromagnetic wave are considered; they show, in particular, the inevitable appearing of double electromagnetic layers on all surfaces that formerly were repeatedly postulated, etc. Quantum dynamics of projectors proves the neediness of subtractions that usually are artificially adding and express transient singularities and zones in squeezed forms.Comment: 12 p

Effect of transition layers on the electromagnetic properties of composites containing conducting fibres

The approach to calculating the effective dielectric and magnetic response in bounded composite materials is developed. The method is essentially based on the renormalisation of the dielectric matrix parameters to account for the surface polarisation and the displacement currents at the interfaces. This makes it possible the use of the effective medium theory developed for unbounded materials, where the spatially-dependent local dielectric constant and magnetic permeability are introduced. A detailed mathematical analysis is given for a dielectric layer having conducting fibres with in-plane positions. The surface effects are most essential at microwave frequencies in correspondence to the resonance excitation of fibres. In thin layers (having a thickness of the transition layer), the effective dielectric constant has a dispersion region at much higher frequencies compared to those for unbounded materials, exhibiting a strong dependence on the layer thickness. For the geometry considered, the effective magnetic permeability differs slightly from unity and corresponds to the renormalised matrix parameter. The magnetic effect is due entirely to the existence of the surface displacement currents.Comment: PDF, 33 pages, 10 figure

Computational Modeling of Realistic Cell Membranes

Cell membranes contain a large variety of lipid types and are crowded with proteins, endowing them with the plasticity needed to fulfill their key roles in cell functioning. The compositional complexity of cellular membranes gives rise to a heterogeneous lateral organization, which is still poorly understood. Computational models, in particular molecular dynamics simulations and related techniques, have provided important insight into the organizational principles of cell membranes over the past decades. Now, we are witnessing a transition from simulations of simpler membrane models to multicomponent systems, culminating in realistic models of an increasing variety of cell types and organelles. Here, we review the state of the art in the field of realistic membrane simulations and discuss the current limitations and challenges ahead

Electrodynamics of Correlated Electron Materials

We review studies of the electromagnetic response of various classes of correlated electron materials including transition metal oxides, organic and molecular conductors, intermetallic compounds with $d$- and $f$-electrons as well as magnetic semiconductors. Optical inquiry into correlations in all these diverse systems is enabled by experimental access to the fundamental characteristics of an ensemble of electrons including their self-energy and kinetic energy. Steady-state spectroscopy carried out over a broad range of frequencies from microwaves to UV light and fast optics time-resolved techniques provide complimentary prospectives on correlations. Because the theoretical understanding of strong correlations is still evolving, the review is focused on the analysis of the universal trends that are emerging out of a large body of experimental data augmented where possible with insights from numerical studies.Comment: 78 pages, 55 figures, 984 reference

Comparisons between Chemical Mapping and Binding to Isoenergetic Oligonucleotide Microarrays Reveal Unexpected Patterns of Binding to the Bacillus subtilis RNase P RNA Specificity Domain†

ABSTRACT: Microarrays with isoenergetic pentamer and hexamer 20-O-methyl oligonucleotide probes with LNA (locked nucleic acid) and 2,6-diaminopurine substitutions were used to probe the binding sites on theRNase P RNA specificity domain of Bacillus subtilis. Unexpected binding patterns were revealed. Because of their enhanced binding free energies, isoenergetic probes can break short duplexes, merge adjacent loops, and/or induce refolding. This suggests new approaches to the rational design of short oligonucleotide therapeutics but limits the utility of microarrays for providing constraints for RNA structure determination. The microarray results are compared to results from chemical mapping experiments, which do provide constraints. Results from both types of experiments indicate that the RNase P RNA folds similarly in 1MNaþ and 10 mMMg2þ. Binding of RNA to RNA is important for many natural func-tions, includingproteinsynthesis (1,2), translationregulation (3,4), gene silencing (5, 6), metabolic regulation (7), RNAmodification (8, 9), etc. (10-13). Binding of oligonucleotides toRNAs is impor-tant for therapeutic approaches, such as siRNA, ribozymes, and antisense therapy (14, 15).Much remains to bediscovered, however, of the rules for predicting binding sites andpotential therapeutics