12,226 research outputs found
The free rigid body dynamics: generalized versus classic
In this paper we analyze the normal forms of a general quadratic Hamiltonian
system defined on the dual of the Lie algebra of real -
skew - symmetric matrices, where is an arbitrary real symmetric
matrix. A consequence of the main results is that any first-order autonomous
three-dimensional differential equation possessing two independent quadratic
constants of motion which admits a positive/negative definite linear
combination, is affinely equivalent to the classical "relaxed" free rigid body
dynamics with linear controls.Comment: 12 page
Resonant Interactions in Rotating Homogeneous Three-dimensional Turbulence
Direct numerical simulations of three-dimensional (3D) homogeneous turbulence
under rapid rigid rotation are conducted to examine the predictions of resonant
wave theory for both small Rossby number and large Reynolds number. The
simulation results reveal that there is a clear inverse energy cascade to the
large scales, as predicted by 2D Navier-Stokes equations for resonant
interactions of slow modes. As the rotation rate increases, the
vertically-averaged horizontal velocity field from 3D Navier-Stokes converges
to the velocity field from 2D Navier-Stokes, as measured by the energy in their
difference field. Likewise, the vertically-averaged vertical velocity from 3D
Navier-Stokes converges to a solution of the 2D passive scalar equation. The
energy flux directly into small wave numbers in the plane from
non-resonant interactions decreases, while fast-mode energy concentrates closer
to that plane. The simulations are consistent with an increasingly dominant
role of resonant triads for more rapid rotation
Searching protein structure databases with DaliLite v.3
The Red Queen said, ‘It takes all the running you can do, to keep in the same place.’ Lewis Carro
Влияние фотосенсибилизаторов на ультраструктурные элементы брюшины в эксперименте
БРЮШИНАПЕРИТОНИТФОТОХИМИОТЕРАПИ
Theory and simulations of rigid polyelectrolytes
We present theoretical and numerical studies on stiff, linear
polyelectrolytes within the framework of the cell model. We first review
analytical results obtained on a mean-field Poisson-Boltzmann level, and then
use molecular dynamics simulations to show, under which circumstances these
fail quantitatively and qualitatively. For the hexagonally packed nematic phase
of the polyelectrolytes we compute the osmotic coefficient as a function of
density. In the presence of multivalent counterions it can become negative,
leading to effective attractions. We show that this results from a reduced
contribution of the virial part to the pressure. We compute the osmotic
coefficient and ionic distribution functions from Poisson-Boltzmann theory with
and without a recently proposed correlation correction, and also simulation
results for the case of poly(para-phenylene) and compare it to recently
obtained experimental data on this stiff polyelectrolyte. We also investigate
ion-ion correlations in the strong coupling regime, and compare them to
predictions of the recently advocated Wigner crystal theories.Comment: 32 pages, 15 figures, proceedings of the ASTATPHYS-MEX-2001, to be
published in Mol. Phy
Optimizing the third-and-a-half post-Newtonian gravitational radiation-reaction force for numerical simulations
The gravitational radiation-reaction force acting on perfect fluids at 3.5
post-Newtonian order is cast into a form which is directly applicable to
numerical simulations. Extensive use is made of metric-coefficient changes
induced by functional coordinate transformations, of the continuity equation,
as well as of the equations of motion. We also present an expression
appropriate for numerical simulations of the radiation field causing the worked
out reaction force.Comment: 22 pages to appear in Physical Review
Distinct nature of static and dynamic magnetic stripes in cuprate superconductors
We present detailed neutron scattering studies of the static and dynamic
stripes in an optimally doped high-temperature superconductor,
LaCuO. We find that the dynamic stripes do not disperse towards the
static stripes in the limit of vanishing energy transfer. We conclude that the
dynamic stripes observed in neutron scattering experiments are not the
Goldstone modes associated with the broken symmetry of the simultaneously
observed static stripes, but rather that the signals originate from different
domains in the sample. These domains may be related by structural twinning, or
may be entirely different phases, where the static stripes in one phase are
pinned versions of the dynamic stripes in the other. Our results explain
earlier observations of unusual dispersions in underdoped
LaSrCuO () and LaBaCuO ().
Our findings are relevant for all compounds exhibiting magnetic stripes, and
may thus be a vital part in unveiling the nature of high temperature
superconductivity
Competing superconducting and magnetic order parameters and field-induced magnetism in electron doped Ba(FeCo)As
We have studied the magnetic and superconducting properties of
Ba(FeCo)As as a function of temperature and
external magnetic field using neutron scattering and muon spin rotation. Below
the superconducting transition temperature the magnetic and superconducting
order parameters coexist and compete. A magnetic field can significantly
enhance the magnetic scattering in the superconducting state, roughly doubling
the Bragg intensity at 13.5 T. We perform a microscopic modelling of the data
by use of a five-band Hamiltonian relevant to iron pnictides. In the
superconducting state, vortices can slow down and freeze spin fluctuations
locally. When such regions couple they result in a long-range ordered
antiferromagnetic phase producing the enhanced magnetic elastic scattering in
agreement with experiments.Comment: 9 pages, 6 figure
Mean-Field HP Model, Designability and Alpha-Helices in Protein Structures
Analysis of the geometric properties of a mean-field HP model on a square
lattice for protein structure shows that structures with large number of switch
backs between surface and core sites are chosen favorably by peptides as unique
ground states. Global comparison of model (binary) peptide sequences with
concatenated (binary) protein sequences listed in the Protein Data Bank and the
Dali Domain Dictionary indicates that the highest correlation occurs between
model peptides choosing the favored structures and those portions of protein
sequences containing alpha-helices.Comment: 4 pages, 2 figure
Invariant higher-order variational problems II
Motivated by applications in computational anatomy, we consider a
second-order problem in the calculus of variations on object manifolds that are
acted upon by Lie groups of smooth invertible transformations. This problem
leads to solution curves known as Riemannian cubics on object manifolds that
are endowed with normal metrics. The prime examples of such object manifolds
are the symmetric spaces. We characterize the class of cubics on object
manifolds that can be lifted horizontally to cubics on the group of
transformations. Conversely, we show that certain types of non-horizontal
geodesics on the group of transformations project to cubics. Finally, we apply
second-order Lagrange--Poincar\'e reduction to the problem of Riemannian cubics
on the group of transformations. This leads to a reduced form of the equations
that reveals the obstruction for the projection of a cubic on a transformation
group to again be a cubic on its object manifold.Comment: 40 pages, 1 figure. First version -- comments welcome
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