Passive Surveillance of \u3cem\u3eIxodes scapularis\u3c/em\u3e (Say), Their Biting Activity, and Associated Pathogens in Massachusetts

A passive surveillance of tick-borne pathogens was conducted over a 7-year period (2006–2012), in which a total of 3551 ticks were submitted to the University of Massachusetts for PCR testing. The vast majority of these ticks were Ixodes scapularis from Massachusetts (N = 2088) and hence were the focus of further analysis. Two TaqMan duplex qPCR assays were developed to test I. scapularis ticks for the presence of three human pathogens: Borrelia burgdorferi, Anaplasma phagocytophilum, and Babesia microti. I. scapularis submissions were concentrated from Cape Cod, the eastern half of the state outside of the Boston metropolitan area, parts of Franklin and Hampshire counties along the Quabbin Reservoir watershed, and southwestern Berkshire county. Differences in seasonal activity pattern were observed for different developmental stages of I. scapularis. The largest proportion of tick bite victims were age 9 years and under. Nymphal ticks were found more often on lower extremities of their hosts, while more adult ticks were found on the head. Overall infection rate of B. burgdorferi, A. phagocytophilum, and B. microti in human-biting ticks was 29.6%, 4.6%, and 1.8%, respectively. B. burgdorferi-infected ticks were widely distributed, but A. phagocytophilum- and B. microti-infected I. scapularis were found mainly in the eastern half of the state. We found that 1.8%, 1.0%, and 0.4% of ticks were coinfected by B. burgdorferi and A. phagocytophilum, B. burgdorferi and B. microti, and A. phagocytophilum and B. microti, respectively, and 0.3% of ticks had triple coinfection

Design and implementation of a generalized laboratory data model

<p>Abstract</p> <p>Background</p> <p>Investigators in the biological sciences continue to exploit laboratory automation methods and have dramatically increased the rates at which they can generate data. In many environments, the methods themselves also evolve in a rapid and fluid manner. These observations point to the importance of robust information management systems in the modern laboratory. Designing and implementing such systems is non-trivial and it appears that in many cases a database project ultimately proves unserviceable.</p> <p>Results</p> <p>We describe a general modeling framework for laboratory data and its implementation as an information management system. The model utilizes several abstraction techniques, focusing especially on the concepts of inheritance and meta-data. Traditional approaches commingle event-oriented data with regular entity data in <it>ad hoc </it>ways. Instead, we define distinct regular entity and event schemas, but fully integrate these via a standardized interface. The design allows straightforward definition of a "processing pipeline" as a sequence of events, obviating the need for separate workflow management systems. A layer above the event-oriented schema integrates events into a workflow by defining "processing directives", which act as automated project managers of items in the system. Directives can be added or modified in an almost trivial fashion, i.e., without the need for schema modification or re-certification of applications. Association between regular entities and events is managed via simple "many-to-many" relationships. We describe the programming interface, as well as techniques for handling input/output, process control, and state transitions.</p> <p>Conclusion</p> <p>The implementation described here has served as the Washington University Genome Sequencing Center's primary information system for several years. It handles all transactions underlying a throughput rate of about 9 million sequencing reactions of various kinds per month and has handily weathered a number of major pipeline reconfigurations. The basic data model can be readily adapted to other high-volume processing environments.</p

Plasma viral loads during early HIV-1 infection are similar in subtype C- and non-subtype C-infected African seroconverters.

Recent data suggest that infection with human immunodeficiency virus type 1 (HIV-1) subtype C results in prolonged high-level viremia (>5 log10 copies/mL) during early infection. We examined the relationship between HIV-1 subtype and plasma viremia among 153 African seroconverters. Mean setpoint viral loads were similar for C and non-C subtypes: 4.36 vs 4.42 log10 copies/mL (P = .61). The proportion of subtype C-infected participants with viral loads >5 log10 copies/mL was not greater than the proportion for those with non-C infection. Our data do not support the hypothesis that higher early viral load accounts for the rapid spread of HIV-1 subtype C in southern Africa

Precarious Irregular Migrants and Their Sharing Economies: A Spectrum of Transactional Laboring Experiences

There is growing interest in the sharing economy as a different way of living in neoliberal capitalist societies, but this discussion is frequently heavily classed and the ethos generally rests on excess capacity of goods and services. This article intervenes in this emerging body of writing to argue that it is equally important to explore the types of sharing and exchange that are survival-compelled among those with precarious livelihoods. Precarious migrants are a group facing significant livelihood pressures, and we are concerned here with a particular category of insecure migrants: irregular migrants including refused asylum seekers in the United Kingdom. Such migrants are especially shaped by their sociolegal status, and without rights to work or welfare they are susceptible to exploitation in their survival-oriented laboring. Existing literature from labor geographies and the subdisciplinary area of unfree and forced labor has not generally focused on the experiences of these migrants as house guests in domestic realms, nor has it thoroughly explored their transactional labor. As such, this article argues that the moral economies of gifting and sharing within such labor create and reproduce particular social structures, cultural norms, and relationships that position people along a spectrum of freedom and exploitation

31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016) : part two

Background The immunological escape of tumors represents one of the main ob- stacles to the treatment of malignancies. The blockade of PD-1 or CTLA-4 receptors represented a milestone in the history of immunotherapy. However, immune checkpoint inhibitors seem to be effective in specific cohorts of patients. It has been proposed that their efficacy relies on the presence of an immunological response. Thus, we hypothesized that disruption of the PD-L1/PD-1 axis would synergize with our oncolytic vaccine platform PeptiCRAd. Methods We used murine B16OVA in vivo tumor models and flow cytometry analysis to investigate the immunological background. Results First, we found that high-burden B16OVA tumors were refractory to combination immunotherapy. However, with a more aggressive schedule, tumors with a lower burden were more susceptible to the combination of PeptiCRAd and PD-L1 blockade. The therapy signifi- cantly increased the median survival of mice (Fig. 7). Interestingly, the reduced growth of contralaterally injected B16F10 cells sug- gested the presence of a long lasting immunological memory also against non-targeted antigens. Concerning the functional state of tumor infiltrating lymphocytes (TILs), we found that all the immune therapies would enhance the percentage of activated (PD-1pos TIM- 3neg) T lymphocytes and reduce the amount of exhausted (PD-1pos TIM-3pos) cells compared to placebo. As expected, we found that PeptiCRAd monotherapy could increase the number of antigen spe- cific CD8+ T cells compared to other treatments. However, only the combination with PD-L1 blockade could significantly increase the ra- tio between activated and exhausted pentamer positive cells (p= 0.0058), suggesting that by disrupting the PD-1/PD-L1 axis we could decrease the amount of dysfunctional antigen specific T cells. We ob- served that the anatomical location deeply influenced the state of CD4+ and CD8+ T lymphocytes. In fact, TIM-3 expression was in- creased by 2 fold on TILs compared to splenic and lymphoid T cells. In the CD8+ compartment, the expression of PD-1 on the surface seemed to be restricted to the tumor micro-environment, while CD4 + T cells had a high expression of PD-1 also in lymphoid organs. Interestingly, we found that the levels of PD-1 were significantly higher on CD8+ T cells than on CD4+ T cells into the tumor micro- environment (p < 0.0001). Conclusions In conclusion, we demonstrated that the efficacy of immune check- point inhibitors might be strongly enhanced by their combination with cancer vaccines. PeptiCRAd was able to increase the number of antigen-specific T cells and PD-L1 blockade prevented their exhaus- tion, resulting in long-lasting immunological memory and increased median survival

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Funder: NCI U24CA211006Abstract: The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) curated consensus somatic mutation calls using whole exome sequencing (WES) and whole genome sequencing (WGS), respectively. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2,658 cancers across 38 tumour types, we compare WES and WGS side-by-side from 746 TCGA samples, finding that ~80% of mutations overlap in covered exonic regions. We estimate that low variant allele fraction (VAF < 15%) and clonal heterogeneity contribute up to 68% of private WGS mutations and 71% of private WES mutations. We observe that ~30% of private WGS mutations trace to mutations identified by a single variant caller in WES consensus efforts. WGS captures both ~50% more variation in exonic regions and un-observed mutations in loci with variable GC-content. Together, our analysis highlights technological divergences between two reproducible somatic variant detection efforts

Implementing Pheromone Technology in the Northeast (NRAES 83 - FRONT MATTER ONLY)

This 65 page publication (NRAES-83) was originally published by the Northeast Regional Agricultural Engineering Service (NRAES, later known as the Natural Resource, Agriculture, and Engineering Service), a multi-university program in the Northeast US disbanded in 2011. Plant and Life Sciences Publishing (PALS) was subsequently formed to manage the NRAES catalog. Ceasing operations in 2018, PALS was a program of the Department of Horticulture in the College of Agriculture and Life Sciences (CALS) at Cornell University. PALS assisted university faculty in publishing, marketing and distributing books for small farmers, gardeners, land owners, workshops, college courses, and consumers.This symposium is a project of the INSECT DETECTION, EVALUATION AND PREDICTION (IDEP) COMMITTEE of the Entomological Society of America, Eastern Branch. The charge of the committee is to: aid in professional communication pertaining to detection, evaluation and prediction of insect pests; foster dissemination of insect impact data; promote the development of effective prediction and detection systems; and promote taxonomic research. Since the first sex pheromone was isolated and identified from the silkworm in 1959, pheromones for hundreds of species have been identified. Many of these pheromones have been applied to the purposes of pest detection, evaluation and prediction. Because of the growing importance of pheromones to pest survey and pest management, the IDEP Committee embarked on a survey of entomologists to determine how pheromones are currently used in the Northeast. The committee identified crops and commodities in the Northeast in which pheromones are used. We invited northeastern pest management specialists in these commodities to conduct surveys of appropriate scientists to identify how specific pheromone products currently are used in their states and provinces. The results of these surveys are the central theme of this symposium. In addition, we invited professionals to provide additional insight into the evaluation, commercialization and use of pheromones. The IDEP Committee is grateful to the symposium participants for their contributions toward the success of this symposium. DUE TO OUSTANDING COPYRIGHT ISSUES OR CLEARLY IDENTIFIED OUT-OF-DATE PRACTICES (E.G. SAFETY CONCERNS), ONLY THE FRONT MATTER (E.G. COVER, ToC, ACKNOWLEDGEMENTS, ETC) ARE PROVIDED HERE AT THIS TIME. Print copies of this item can be found at libraries listed here: www.worldcat.org/oclc/3677051

Integrated Pest Management for Northeast Schools (NRAES 152)

This 60 page publication (NRAES-152) was originally published by the Natural Resource, Agriculture, and Engineering Service (NRAES, previously known as the Northeast Regional Agricultural Engineering Service), a multi-university program in the Northeast US disbanded in 2011. Plant and Life Sciences Publishing (PALS) was subsequently formed to manage the NRAES catalog. Ceasing operations in 2018, PALS was a program of the Department of Horticulture in the College of Agriculture and Life Sciences (CALS) at Cornell University. PALS assisted university faculty in publishing, marketing and distributing books for small farmers, gardeners, land owners, workshops, college courses, and consumers.This guideline was developed to help school personnel in the Northeast USA establish a comprehensive Integrated pest management (IPM) program, including developing an IPM policy statement, identifying roles and responsibilities of various members of the school community, and providing an IPM bid specification to use in contracting with outside pest management contractors. It is a general resource for school administrators, parents, maintenance staff, and others interested in establishing an IPM program in schools

Choosing a pest control company : IPM is the key

IPM stands for “Integrated Pest Management,” a common-sense pest management strategy that focuses on long-term solutions to pest problems with minimum impact on human health and the environment. In an IPM approach, pesticides are not relied upon as the only response to a pest problem, but are part of an integrated approach with other tactics. When needed, only the lowest risk products are used.Published June 2008. A more recent revision exists. Please look for up-to-date information in the OSU Extension Catalog: https://catalog.extension.oregonstate.ed