Do quasi-regular structures really exist in the solar photosphere? I. Observational evidence

Two series of solar-granulation images -- the La Palma series of 5 June 1993 and the SOHO MDI series of 17--18 January 1997 -- are analysed both qualitatively and quantitatively. New evidence is presented for the existence of long-lived, quasi-regular structures (first reported by Getling and Brandt (2002)), which no longer appear unusual in images averaged over 1--2-h time intervals. Such structures appear as families of light and dark concentric rings or families of light and dark parallel strips (``ridges'' and ``trenches'' in the brightness distributions). In some cases, rings are combined with radial ``spokes'' and can thus form ``web'' patterns. The characteristic width of a ridge or trench is somewhat larger than the typical size of granules. Running-average movies constructed from the series of images are used to seek such structures. An algorithm is developed to obtain, for automatically selected centres, the radial distributions of the azimuthally averaged intensity, which highlight the concentric-ring patterns. We also present a time-averaged granulation image processed with a software package intended for the detection of geological structures in aerospace images. A technique of running-average-based correlations between the brightness variations at various points of the granular field is developed and indications are found for a dynamical link between the emergence and sinking of hot and cool parcels of the solar plasma. In particular, such a correlation analysis confirms our suggestion that granules -- overheated blobs -- may repeatedly emerge on the solar surface. Based on our study, the critical remarks by Rast (2002) on the original paper by Getling and Brandt (2002) can be dismissed.Comment: 21 page, 8 figures; accepted by "Solar Physics

Cut and paste invariants of manifolds via algebraic K-theory

Recent work of Jonathan Campbell and Inna Zakharevich has focused on building machinery for studying scissors congruence problems via algebraic $K$-theory, and applying these tools to studying the Grothendieck ring of varieties. In this paper we give a new application of their framework: we construct a $K$-space that recovers the classical $\mathrm{SK}$ ("schneiden und kleben," German for "cut and paste") groups for manifolds on $\pi_0$, and we construct a derived version of the Euler characteristic

Limb observations of the Martian atmosphere with Mars Express’ High Resolution Stereo Camera

Introduction: Good knowledge about the aerosol distribution and compositions is essential for the understanding of thermodynamic processes in the Martian atmosphere, which in turn is important for the understanding of the Martian climate and the altitude of the upper boundary of the atmosphere. The last point is of special interest for spacecraft aerobreaking manoeuvres. The Martian atmosphere often shows horizontal layers of haze up to altitudes of about 80 km. These have been described and analysed e.g. by Jaquin et al., 1986, usingViking Orbiter images and by Montmessin et al., 2006, who used SPICAM stellar occultation data. Both showed seasonal and latitudinal changes in the vertical structure of the aerosol distribution and composition. Apart from SPICAM, the High Resolution Stereo Camera (HRSC) is also on board ESA’s robotic spacecraft Mars Express. HRSC was build and is operated by the German Aerospace Center (Neukum et al. 2004; Jaumann et al. 2007). Mars Express is orbiting Mars in an elliptical orbit, with HRSC scanning the surface of Mars, primarily for geological research. In addition to that, HRSC has been used to sample the planetary limb. We examine the HRSC planetary limb data and analyse the seasonal and latitudinal variations of the maximum altitude of the haze layer and of the occurrence of high altitude detached hazes. We make some comparisons with earlier work. In contrast to the SPICAM instrument, HRSC observes the atmosphere during daytime, which makes it possible to compare night and daytime observations. The HRSC Limb Data: HRSC is a push broom scanner with nine line sensors pointing in different directions to facilitate stereoscopic imaging. Four of the sensors have colour filters at 440 nm, 530 nm, 750 nm and 970 nm, respectively. The five other sensors all have filters centred at 650 nm. These panchromatic filters have a much wider bandpass than the four colour filters. The surface observations which are HRSC’s main purpose, are usually take while the spacecraft is nadirtracking near pericentre. Limb observations, however, are mostly made with a pointing of the spacecraft being inertially fixxed in celestial space. This leaves only a small time window to make observations of the limb during descent or ascent. Therefore, usually only a few of the nine sensors can be used for the limb observation. Due to the motion of the spacecraft, the individual image lines are taken at different geographical locations and altitudes. The position of each image pixel above the limb has to be calculated from the spacecraft positioning information (Scholten, pers. comm.). The typical difference in altitude between two neighbouring pixels is between a couple of dozen metres and 150 m. HRSC has been observing the limb occasionally throughout the mission since 2004. So far the northern hemisphere and especially the north polar region, were particularly well covered (Figure 1 and 2). In Figure 2, we give an overview of the available data, sorted by season (LS) and latitude. The channel in which the observations have been made is colourcoded. Most observations were made with the panchromatic channels. There are also many observations with the blue and green sensors and only a few were made in the red and infra red channels. We find the best data coverage in northern spring in the northern most latitudes. For obvious reasons, we do not have any data during polar nights. For most of our actual analysis we sample the five central pixels of the sensor lines. This allows for minimal horizontal averaging. Analysis: As an example, Fig. 3 shows images and profiles for the blue, nadir, and green channels from orbit 6104. Al three images show a continuously bright limb haze until an altitude of about 20 km. At higher altitudes the limb haze becomes darker and stratified consistent with the limb profiles described by Jacquin et al., 1986. As Mars Express progresses along its orbit, the limb observations are made at different locations above the surface. The locations of the three profiles in Fig. 3 are still in close proximity of each other, in fact they overlap, but none the less they show different vertical aerosol distributions. Beginning above the North Polar cap and going southward, we observe less reflectivity above 20 km and more reflectivity below 20 km, hinting at different compositions or amounts of aerosols. It is not possible to obtain and compare profiles at the same location and at the same time with different sensors, but still, averages of profiles over place and season can provide us with information about typical atmospheric conditions. In Fig. 4 we show spectra from the average profiles at three different latitudinal bands between 70�N–90�N, 30�S–30�N, and 90�S– 70�S, on the left, centre, and right, respectively. The different symbols and colours represent the different altitudes at which the spectra were sampled. The size of the symbol increases with the number of averaged profiles. There are very few observations above the South Polar region (compare Fig. 1). In the North (and South) Polar region there is almost no signal above 30 km altitude, while around the equator the limb haze remains bright until altitudes of about 60 km. At the poles, the spectrum at 10 km is reddish. At higher altitudes the spectrum gets whiter, indicating smaller particles or higher ice content. At the low latitudes the spectra are reddish up to 40 km. At 60 km we see a more or less white spectrum. Figure 5 shows the maximum altitude of the aerosols as seen by HRSC, depending on season. During aphelion (LS � 70�) the maximum altitude of the aerosols that are visible with HRSC is around 40 km. During perihelion (LS � 250�) the maximum altitude is around 70 km. Discussion: Figure 1 and 2 show that there are plenty of visual and near infra red HRSC observations of the Martian limb available. These show aerosol distributions that change with season and latitude (Fig. 3 and 4). The plots in Fig. 4 show the spectra of the average limb profiles at several altitudes for three latitudinal bands. Two important distinctions can be made between the equatorial and the polar regions. First, the altitude at which aerosol occur is higher in the equatorial region and second, the composition of the aerosols at different altitudes is different. While the spectrum is white around 20 km altitude above the north pole, it is red at the low latitudes. The seasonal variations of maximum altitude of the aerosols is in good agreement with Jaquin et al. (1986) and with Montmessin et al. (2006). The similarity between Montmessin’s results and ours is likely to be due to the large annual variation of atmospheric dust load compared to the diurnal cycle. A much closer look at the data, is forseen to analyse the daily variation of aerosols in the Martian atmosphere. The CO2 and waterice aerosols are more likely to change their vertical distribution (above the planetary boundary layer) between day and night than the mineral (dust) aerosols. Spectral information would help to discriminate between these components. HRSC can not provide it, because the observation for the different filters take place at different locations and times (see Fig. 3). An alternative is to fit aerosol models to the inverted profiles. Currently, we are preparing this work. Mars Express’ HRSC limb data present a valuable opportunity to analyse Mars daytime atmospheric dust at a high vertical resolution. This work gives a short overview of the available data and analyses some seasonal and latitudinal properties

Discovery and genotyping of structural variation from long-read haploid genome sequence data

In an effort to more fully understand the full spectrum of human genetic variation, we generated deep single-molecule, real-time (SMRT) sequencing data from two haploid human genomes. By using an assembly-based approach (SMRT-SV), we systematically assessed each genome independently for structural variants (SVs) and indels resolving the sequence structure of 461,553 genetic variants from 2 bp to 28 kbp in length. We find that &gt;89% of these variants have been missed as part of analysis of the 1000 Genomes Project even after adjusting for more common variants (MAF &gt; 1%). We estimate that this theoretical human diploid differs by as much as ∼16 Mbp with respect to the human reference, with long-read sequencing data providing a fivefold increase in sensitivity for genetic variants ranging in size from 7 bp to 1 kbp compared with short-read sequence data. Although a large fraction of genetic variants were not detected by short-read approaches, once the alternate allele is sequence-resolved, we show that 61% of SVs can be genotyped in short-read sequence data sets with high accuracy. Uncoupling discovery from genotyping thus allows for the majority of this missed common variation to be genotyped in the human population. Interestingly, when we repeat SV detection on a pseudodiploid genome constructed in silico by merging the two haploids, we find that ∼59% of the heterozygous SVs are no longer detected by SMRT-SV. These results indicate that haploid resolution of long-read sequencing data will significantly increase sensitivity of SV detection.</jats:p

Supernova 1954J (Variable 12) in NGC 2403 Unmasked

We have confirmed that the precursor star of the unusual Supernova 1954J (also known as Variable 12) in NGC 2403 survived what appears to have been a super-outburst, similar to the 1843 Great Eruption of eta Carinae in the Galaxy. The apparent survivor has changed little in brightness and color over the last eight years, and a Keck spectrum reveals characteristics broadly similar to those of eta Car. This is further suggested by our identification of the actual outburst-surviving star in high-resolution images obtained with the Advanced Camera for Surveys on the Hubble Space Telescope. We reveal this ``supernova impostor'' as a highly luminous (M_V^0 ~ -8.0 mag), very massive (M_initial >~ 25 Msun) eruptive star, now surrounded by a dusty (A_V ~ 4 mag) nebula, similar to eta Car's famous Homunculus.Comment: 13 pages, 10 figures, to appear in the 2005 June PAS

The Missing Luminous Blue Variables and the Bistability Jump

We discuss an interesting feature of the distribution of luminous blue variables on the H-R diagram, and we propose a connection with the bistability jump in the winds of early-type supergiants. There appears to be a deficiency of quiescent LBVs on the S Dor instability strip at luminosities between log L/Lsun = 5.6 and 5.8. The upper boundary, is also where the temperature-dependent S Dor instability strip intersects the bistability jump at about 21,000 K. Due to increased opacity, winds of early-type supergiants are slower and denser on the cool side of the bistability jump, and we postulate that this may trigger optically-thick winds that inhibit quiescent LBVs from residing there. We conduct numerical simulations of radiation-driven winds for a range of temperatures, masses, and velocity laws at log L/Lsun=5.7 to see what effect the bistability jump should have. We find that for relatively low stellar masses the increase in wind density at the bistability jump leads to the formation of a modest to strong pseudo photosphere -- enough to make an early B-type star appear as a yellow hypergiant. Thus, the proposed mechanism will be most relevant for LBVs that are post-red supergiants. Yellow hypergiants like IRC+10420 and rho Cas occupy the same luminosity range as the ``missing'' LBVs, and show apparent temperature variations at constant luminosity. If these yellow hypergiants do eventually become Wolf-Rayet stars, we speculate that they may skip the normal LBV phase, at least as far as their apparent positions on the HR diagram are concerned.Comment: 20 pages, 4 figs, accepted by Ap

In vivo biocompatibility assessment of (PTFE–PVDF–PP) terpolymer-based membrane with potential application for glaucoma treatment

The aim of the work was to evaluate the in vivo biological behaviour of polymeric membrane materials for glaucoma implants. The base material was biostable synthetic terpolymer (PTFE–PVDF–PP) with proved biocompability (PN-EN ISO 10993). The samples manufactured in the form a membrane were subjected to chemical and physical treatment to create an open pore system within the polymer matrix. As a porogenic phase biodegradable natrium alginate in a fibrous form was employed. The non-perforating deep sclerectomy technique was performed in a rabbit model. The clinical observations were made after 14 and 30 days. During the study clinical symptoms of a moderate degree were observed, and histopathological changes were typical for foreign body implantation. At the end stage of the study no significant difference in histopathological assessment was found between control and experimental group. Similarities observed in both groups and relatively mild histopathological changes in the tissue surrounding the implant indicate that the observed symptoms come from a deep scleral trauma caused by surgery, and not by the presence of the implant itself

A High-Quality Bonobo Genome Refines The Analysis Of Hominid Evolution

The divergence of chimpanzee and bonobo provides one of the few examples of recent hominid speciation(1,2). Here we describe a fully annotated, high-quality bonobo genome assembly, which was constructed without guidance from reference genomes by applying a multiplatform genomics approach. We generate a bonobo genome assembly in which more than 98% of genes are completely annotated and 99% of the gaps are closed, including the resolution of about half of the segmental duplications and almost all of the full-length mobile elements. We compare the bonobo genome to those of other great apes(1,3-5) and identify more than 5,569 fixed structural variants that specifically distinguish the bonobo and chimpanzee lineages. We focus on genes that have been lost, changed in structure or expanded in the last few million years of bonobo evolution. We produce a high-resolution map of incomplete lineage sorting and estimate that around 5.1% of the human genome is genetically closer to chimpanzee or bonobo and that more than 36.5% of the genome shows incomplete lineage sorting if we consider a deeper phylogeny including gorilla and orangutan. We also show that 26% of the segments of incomplete lineage sorting between human and chimpanzee or human and bonobo are non-randomly distributed and that genes within these clustered segments show significant excess of amino acid replacement compared to the rest of the genome

Scientific assessment of the quality of OSIRIS images

OSIRIS, the scientific imaging system onboard the ESA Rosetta spacecraft, has been imaging the nucleus of comet 67P/Churyumov-Gerasimenko and its dust and gas environment since March 2014. The images serve different scientific goals, from morphology and composition studies of the nucleus surface, to the motion and trajectories of dust grains, the general structure of the dust coma, the morphology and intensity of jets, gas distribution, mass loss, and dust and gas production rates. We present the calibration of the raw images taken by OSIRIS and address the accuracy that we can expect in our scientific results based on the accuracy of the calibration steps that we have performed. Methods. We describe the pipeline that has been developed to automatically calibrate the OSIRIS images. Through a series of steps, radiometrically calibrated and distortion corrected images are produced and can be used for scientific studies. Calibration campaigns were run on the ground before launch and throughout the years in flight to determine the parameters that are used to calibrate the images and to verify their evolution with time. We describe how these parameters were determined and we address their accuracy. Results. We provide a guideline to the level of trust that can be put into the various studies performed with OSIRIS images, based on the accuracy of the image calibration