Collisional damping rates for plasma waves

The distinction between the plasma dynamics dominated by collisional transport versus collective processes has never been rigorously addressed until recently. A recent paper [Yoon et al., Phys. Rev. E 93, 033203 (2016)] formulates for the first time, a unified kinetic theory in which collective processes and collisional dynamics are systematically incorporated from first principles. One of the outcomes of such a formalism is the rigorous derivation of collisional damping rates for Langmuir and ion-acoustic waves, which can be contrasted to the heuristic customary approach. However, the results are given only in formal mathematical expressions. The present Brief Communication numerically evaluates the rigorous collisional damping rates by considering the case of plasma particles with Maxwellian velocity distribution function so as to assess the consequence of the rigorous formalism in a quantitative manner. Comparison with the heuristic ("Spitzer") formula shows that the accurate damping rates are much lower in magnitude than the conventional expression, which implies that the traditional approach over-estimates the importance of attenuation of plasma waves by collisional relaxation process. Such a finding may have a wide applicability ranging from laboratory to space and astrophysical plasmas.Comment: 5 pages, 2 figures; Published in Physics of Plasmas, volume/Issue 23/6. Publisher: AIP Publishing LLC. Date: Jun 1, 2016. URL: http://aip.scitation.org/doi/10.1063/1.4953802 Rights managed by AIP Publishing LL

Linearized model Fokker-Planck collision operators for gyrokinetic simulations. II. Numerical implementation and tests

A set of key properties for an ideal dissipation scheme in gyrokinetic simulations is proposed, and implementation of a model collision operator satisfying these properties is described. This operator is based on the exact linearized test-particle collision operator, with approximations to the field-particle terms that preserve conservation laws and an H-Theorem. It includes energy diffusion, pitch-angle scattering, and finite Larmor radius effects corresponding to classical (real-space) diffusion. The numerical implementation in the continuum gyrokinetic code GS2 is fully implicit and guarantees exact satisfaction of conservation properties. Numerical results are presented showing that the correct physics is captured over the entire range of collisionalities, from the collisionless to the strongly collisional regimes, without recourse to artificial dissipation.Comment: 13 pages, 8 figures, submitted to Physics of Plasmas; typos fixe

Solar Flares as Cascades of Reconnecting Magnetic Loops

A model for the solar coronal magnetic field is proposed where multiple directed loops evolve in space and time. Loops injected at small scales are anchored by footpoints of opposite polarity moving randomly on a surface. Nearby footpoints of the same polarity aggregate, and loops can reconnect when they collide. This may trigger a cascade of further reconnection, representing a solar flare. Numerical simulations show that a power law distribution of flare energies emerges, associated with a scale free network of loops, indicating self-organized criticality.Comment: 4 pages, 4 figures, To be published in Phys. Rev. Let

Dynamics of zonal flow-like structures in the edge of the TJ-II stellarator

The dynamics of fluctuating electric field structures in the edge of the TJ-II stellarator, that display zonal flow-like traits, is studied. These structures have been shown to be global and affect particle transport dynamically [J.A. Alonso et al., Nucl. Fus. 52 063010 (2012)]. In this article we discuss possible drive (Reynolds stress) and damping (Neoclassical viscosity, geodesic transfer) mechanisms for the associated ExB velocity. We show that: (a) while the observed turbulence-driven forces can provide the necessary perpendicular acceleration, a causal relation could not be firmly established, possibly because of the locality of the Reynolds stress measurements, (b) the calculated neoclassical viscosity and damping times are comparable to the observed zonal flow relaxation times, and (c) although an accompanying density modulation is observed to be associated to the zonal flow, it is not consistent with the excitation of pressure side-bands, like those present in geodesic acoustic oscillations, caused by the compression of the ExB flow field

Biomarker Testing to Estimate Under-Reported Heavy Alcohol Consumption by Persons with HIV Initiating ART in Uganda

Alcohol affects the transmission and treatment of HIV, yet may be under-reported in resource-limited settings. We compared self-reported alcohol consumption with levels of plasma carbohydrate-deficient transferrin (%CDT), a biomarker of heavy alcohol consumption, in persons initiating antiretroviral therapy in Uganda. Almost seven percent (6.7%) of persons reporting abstaining and 10% reporting consuming 1–40 drinks in the prior month tested positive for %CDT, and actual under-report may be higher due to low sensitivity of %CDT. These results suggest likely under-report in those reporting abstaining and current drinking. Improved identification of heavy alcohol consumption is needed for research and clinical purposes

Understanding the effect of sheared flow on microinstabilities

The competition between the drive and stabilization of plasma microinstabilities by sheared flow is investigated, focusing on the ion temperature gradient mode. Using a twisting mode representation in sheared slab geometry, the characteristic equations have been formulated for a dissipative fluid model, developed rigorously from the gyrokinetic equation. They clearly show that perpendicular flow shear convects perturbations along the field at a speed we denote by $Mc_s$ (where $c_s$ is the sound speed), whilst parallel flow shear enters as an instability driving term analogous to the usual temperature and density gradient effects. For sufficiently strong perpendicular flow shear, $M >1$, the propagation of the system characteristics is unidirectional and no unstable eigenmodes may form. Perturbations are swept along the field, to be ultimately dissipated as they are sheared ever more strongly. Numerical studies of the equations also reveal the existence of stable regions when $M < 1$, where the driving terms conflict. However, in both cases transitory perturbations exist, which could attain substantial amplitudes before decaying. Indeed, for $M \gg 1$, they are shown to exponentiate $\sqrt{M}$ times. This may provide a subcritical route to turbulence in tokamaks.Comment: minor revisions; accepted to PPC

Local adaptation in natural European host grass populations with asymmetric symbiosis

Recent work on microbiomes is revealing the wealth and importance of plant-microbe interactions. Microbial symbionts are proposed to have profound effects on fitness of their host plants and vice versa, especially when their fitness is tightly linked. Here we studied local adaptation of host plants and possible fitness contribution of such symbiosis in the context of abiotic environmental factors. We conducted a four-way multi-year reciprocal transplant experiment with natural populations of the perennial grass Festuca rubra s.l. from northern and southern Finland, Faroe Islands and Spain. We included F. rubra with and without transmitted symbiotic fungus Epichloë that is vertically transmitted via host seed. We found local adaptation across the European range, as evidenced by higher host fitness of the local geographic origin compared with nonlocals at three of the four studied sites, suggesting that selection pressures are driving evolution in different directions. Abiotic factors did not result in strong fitness effects related to Epichloë symbiosis, indicating that other factors such as herbivory are more likely to contribute to fitness differences between plants naturally occurring with or without Epichloë. Nevertheless, in the case of asymmetric symbiosis that is obligatory for the symbiont, abiotic conditions that affect performance of the host, may also cause selective pressure for the symbiont.</p