The structural geology of the Naukluft Nappe Complex and its relationship to the Damara Orogenic Belt, South West Africa/Namibia

The Naukluft nappe complex has been quoted as a classic example of gravity gliding tectonics (Korn & Martin, 1959). Situated close to the southern margin of the Damara orogenic belt, it provides a key to the persistent controversy over the correlation of the "geosynclinal" Damara Supergroup with the Nama Group on the Kalahari craton. It also contains critical evidence bearing on the timing and large-scale geodynamics of the Late Precambrian-Early Palaeozoic Damara orogeny, particularly the hypothesis that it involved plate tectonic processes of subduction and continental collision in the southern zones

The structural evolution of an ancient accretionary prism in the Damara Belt, Namibia

The Southern Marginal Zone (SMZ) of the Damara Belt, exposed in the Gaub Canyon in central Namibia, consists of fourteen lithotectonic units of high strain amphiholite facies rock with pelagic, hemi-pelagic and clastic sedimentary protoliths. These rocks are intercalated With lenses of metabasite. Regional high-pressure - low-temperature metamorphic conditions (~1O kbar and ~600°C) dominate the Southern and Southern Marginal Zones of the Damara Belt, leading to the interpretation that these tectonostratigraphic terranes formed in an accretionary prism along an ancient subduction margin. The structures in the SMZ are the result of progressive deformation, inferred to have initiated under low-grade metamorphic conditions (D₁) and evolved through prograde to peak metamorphism (D₂), ending in relatively low-temperature retrograde conditions (D₃). Each of the deformation phases is characterised by a foliation. D₁ is associated With pure shear dominated layer-parallel extension characterised by disrupted lithological layering and hedding-parallel foliation S₀+₁. D₃ is defined as deformation related to the formation of an axial-planar S₂ caused by folding of S₀+₁ around F₂ hinge lines. Widespread isoclinal recumbent folding resulted in transposition of these fahrics and the general foliation is thus termed S₀+₁+₂. This composite foliation contains a down-dip stretching lineation L₂. Folding was contemporaneous With top-to-the-SE directed thrusting in D₂ faults and shear zones that are seen to displace D₁ fabric. Fold hinge lines parallel to L₂ suggest D₂ is characterised by non-ideal simple shear. D₃ is defined by a crenulation cleavage S₃, at near right angles to S₀+₁+₂ foliation resulting from NW-SE pure shear shortening. This phase of deformation is also associated with retrograde, reverse faulting that is localised along some of the D₂ shear zones

Structural analysis of some pre-Cape formations in the Western Province

The principal objective of the present study was the testing of previous stratigraphic interpretations, particularly in respect of the Klipheuwel and Franschhoek formations, by means of attention to hitherto generally neglected structural or tectonic aspects of the pre-Cape rocks. In the Worcester area, it was found that the structural sequence across the so-called Malmesbury-Klipheuwel unconformity (de Villiers, Jansen and Mulder, 1964) is the reverse of that previously postulated, and the controversial correlation of the lower (previously upper) formation with the Klipheuwel Group cannot be maintained. The deformation of the pre-Cape formations is considered to have taken place in four stages or phases, labelled 0, M, X and K in sequence. The Early phases, 0 and M, are responsible for the broad stratigraphic pattern, while the Late phases, X and K, locally modify the earlier structures and have little or no effect on the distribution of rock types. An important tectonic discontinuity, or slide, apparently separates the upper formation from the two lower units, and close to the much younger Worcester Fault, a pre-Cape thrust has brought sheared and mylonitised granitic rocks to rest against the former. Structural relationships at Franschhoek are confusing, but in Kaaimansgat structures of Early and Late generations can be distinguished. In these southern areas the deformation of the rocks is again such that they clearly cannot be correlated with the Klipheuwel Group. However, their close association with older, sheared granitoid rocks and caraclasites - one of the main points upon which the Franschhoek-Klipheuwel correlation was based - is not in dispute. Although granite studies were not included in the scope of this work, one of the incidental results has been to widen the field of the older granite problem to include Kaaimansgat and Worcester as well as Franschhoek. The relationships of the pre-Cape formations treated in this work - called the Boland Group (after Rabie, 1948) - to the "Malmesbury" formations farther west is still problematical. The deformation of most of the pre-Cape formations in the Western Cape Province, Boland and "Malmesbury" alike, was apparently effected during a major orogenic event in upper Proterozoic - lower Paleozoic times. The term "Saldanian" is proposed as generally descriptive of this event and the structures which it has produced

Large scale quantification of aquifer storage and volumes from the Peninsula and Skurweberg Formations in the southwestern Cape

The Western Cape Province of South Africa is a relatively water-scarce area as a result of the Mediterranean climate experienced. Due to the increased usage of groundwater, and the requirement to know how much water is available for use, it is imperative as a 1st step to establish an initial estimate of groundwater in storage. The storage capacity, namely, the total available storage of the different aquifers, and the storage yield of the fractured quartzitic Peninsula and Skurweberg Formation aquifers of the Table Mountain Group (TMG), are calculated with a spreadsheet and Geographic Information System (GIS) model. This model is based on the aquifer geometry and estimated values (based on measured data) for porosity and specific storage (calculated using the classic Jacob relation). The aquifer geometry is calculated from 1:50 000 and 1:250 000 geological contacts, faults and major fractures, with dips and aquifer formation thickness calculated through structural geology 1st principles using a Digital Elevation Model (DEM). Balanced geological cross-sections constructed through the model areas provide an important check for the aquifer top and bottom surface depth values produced by the GIS model. The storage modelling undertaken here forms part of the City of Cape Town TMG Aquifer Feasibility Study and Pilot Project, with modelling focusing on the 3 main groundwater target areas at Theewaterskloof (Nuweberg), Wemmershoek and Kogelberg-Steenbras. In the storage models, the Peninsula and Skurweberg Formation aquifers have confined pore volumes ranging from approximately 29 bn. to 173 bn. m3 and 4 bn. to 26 bn. m3, respectively (based on using different porosity values ranging from 2.5% to 15%). Using an average head decline of 1 m across the confined aquifer areas across all 3 groundwater exploration areas, and confined pore volumes based on a porosity of 5%, 6.9 Mm3 and 1.1 Mm3 of groundwater, from the Peninsula and Skurweberg Formation aquifers, respectively, is available. The aquifer storage model intentionally makes use of low, geologically reasonable values for porosity and aquifer compressibility, so as to provide minimum large-scale 1st  estimates of potential yields; however, when new data become available these initial porosity and compressibility assumptions will probably be revised upward. The storage yield approach is also very conservative, as it does not take into account the annual replenishment of the aquifer, and constitutes the yield potential during drought conditions (zero recharge) from the confined portion of the aquifer only. The yield model therefore provides a quantitative perspective on the common public and decision-maker perception that groundwater abstraction from the deep confined Peninsula Formation aquifer will significantly dewater the system, with (often unspecified) adverse ecological consequences. Even where the regionally-averaged decline in hydraulic head approaches 20 m, the volume released by aquifer compression generally remains in the order of 0.24% of the total volume in slow circulation within the deep groundwater flow system. A vastly greater volume of groundwater is essentially non-extractable by any practical and/or economical means.Keywords: Table Mountain Group, Peninsula Formation, Skurweberg Formation, hydrogeology, aquifer, storage modelling, storage yiel

The management of scarce water resources using GNSS, InSAR and in-situ micro gravity measurements as monitoring tools

South Africa is a water scarce country hence the careful monitoring and management of available water resources is critical for the wellbeing of the citizens of the country. A high percentage of the Earth’s water supply is stored underground which can be extracted either through pumping or using artesian pressure. This paper describes the application of GNSS, InSAR and In-Situ Micro Gravity measurements for the monitoring of an artesian wellfield in the Oudtshoorn District in the Western Cape province of South Africa. GNSS receivers were run continuously for a period of 133 days between March and August 2014 to detect possible surface subsidence during pumping and artesian free flow extraction of water in the wellfield. Two InSAR scenes were processed, one during the peak period of water extraction from the wellfield and the other approximately 4 months after all boreholes were closed and pumps switched off. A micro-gravity campaign was conducted over two days in the wellfield with the gravity meter co-located at one borehole which was opened on the second day of the campaign. The results from the GNSS monitoring showed a subsidence of approximately 15 to 20 mm at the peak of the free flow and pump while those from the InSAR and microgravity measurements were largely inconclusive

Did transit through the galactic spiral arms seed crust production on the early Earth?

Although there is evidence for periodic geological perturbations driven by regular or semi-regular extra-terrestrial bombardment, the production of Earth’s continental crust is generally regarded as a function of planetary differentiation driven by internal processes. We report time series analysis of the Hf isotopic composition of zircon grains from the North Atlantic and Pilbara cratons, the archetypes of Archean plate tectonic and non-plate tectonic settings, respectively. An ~170–200 m.y. frequency is recognized in both cratons that matches the transit of the solar system through the galactic spiral arms, where the density of stars is high. An increase in stellar density is consistent with an enhanced rate of Earth bombardment by comets, the larger of which would have initiated crustal nuclei production via impact-driven decompression melting of the mantle. Hence, the production and preservation of continental crust on the early Earth may have been fundamentally influenced by exogenous processes. A test of this model using oxygen isotopes in zircon from the Pilbara craton reveals correlations between crust with anomalously light isotopic signatures and exit from the Perseus spiral arm and entry into the Norma spiral arm, the latter of which matches the known age of terrestrial spherule beds. Our data support bolide impact, which promoted the growth of crustal nuclei, on solar system transit into and out of the galactic spiral arms

Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland

Circoviruses are circular single-stranded DNA (ssDNA) viruses that infect a variety of animals, both domestic and wild. Circovirus infection in birds is associated with immunosuppression and this in turn predisposes the infected animals to secondary infections that can lead to mortality. Farmed geese (Anser anser) in many parts of the world are infected with circoviruses. The majority of the current genomic information for goose circoviruses (GoCVs) (n = 40) are from birds sampled in China and Taiwan, and only two genome sequences are available from Europe (Germany and Poland). In this study, we sampled 23 wild and 19 domestic geese from the Gopło Lake area in Poland. We determined the genomes of GoCV from 21 geese; 14 domestic Greylag geese (Anser anser), three wild Greylag geese (A. anser), three bean geese (A. fabalis), and one white fronted goose (A. albifrons). These genomes share 83–95% nucleotide pairwise identities with previously identified GoCV genomes, most are recombinants with exchanged fragment sizes up to 50% of the genome. Higher diversity levels can be seen within the genomes from domestic geese compared with those from wild geese. In the GoCV capsid protein (cp) and replication associated protein (rep) gene sequences we found that episodic positive selection appears to largely mirror those of beak and feather disease virus and pigeon circovirus. Analysis of the secondary structure of the ssDNA genome revealed a conserved stem-loop structure with the G-C rich stem having a high degree of negative selection on these nucleotides

Regional zircon U-Pb geochronology for the Maniitsoq region, southwest Greenland

The Ministry of Mineral Resources, Government of Greenland, funded this project. Analyses in the JdLC GeoHistory Facility were enabled by instrumentation supported by AuScope (auscope.org.au) and the Australian Government via the National Collaborative Research Infrastructure Strategy. The Tescan Mira3 FEG-SEM was funded through the Australian Research Council LIEF program.Zircon U-Pb geochronology places high-temperature geological events into temporal context. Here, we present a comprehensive zircon U-Pb geochronology dataset for the Meso- to Neoarchean Maniitsoq region in southwest Greenland, which includes the Akia Terrane, Tuno Terrane, and the intervening Alanngua Complex. The magmatic and metamorphic processes recorded in these terranes straddle a key change-point in early Earth geodynamics. This dataset comprises zircon U-Pb ages for 121 samples, including 46 that are newly dated. A principal crystallization peak occurs across all three terranes at ca. 3000 Ma, with subordinate crystallization age peaks at 3200 Ma (Akia Terrane and Alanngua Complex only), 2720 Ma and 2540 Ma. Metamorphic age peaks occur at 2990 Ma, 2820-2700 Ma, 2670-2600 Ma and 2540 Ma. Except for one sample, all dated metamorphic zircon growth after the Neoarchean occurred in the Alanngua Complex or within 20 km of its boundaries. This U-Pb dataset provides an important resource for addressing Earth Science topics as diverse as crustal evolution, fluid-rock interaction and mineral deposit genesis.Publisher PDFPeer reviewe

A geochronological review of magmatism along the external margin of Columbia and in the Grenville-age orogens forming the core of Rodinia

A total of 4344 magmatic U-Pb ages in the range 2300 to 800 Ma have been compiled from the Great Proterozoic Accretionary Orogen along the margin of the Columbia / Nuna supercontinent and from the subsequent Grenvillian collisional orogens forming the core of Rodinia. The age data are derived from Laurentia (North America and Greenland, n = 1212), Baltica (NE Europe, n = 1922), Amazonia (central South America, n = 625), Kalahari (southern Africa and Dronning Maud Land in East Antarctica, n = 386), and western Australia (n = 199). Laurentia, Baltica, and Amazonia (and possibly other cratons) most likely formed a ca. 10 000-km-long external active continental margin of Columbia from its assembly at ca. 1800 Ma until its dispersal at ca. 1260 Ma, after which all cratons studied were involved in the Rodinia-forming Grenvillian orogeny. However, the magmatic record is not smooth and even but highly irregular, with marked peaks and troughs, both for individual cratons and the combined data set. Magmatic peaks typically range in duration from a few tens of million years up to around hundred million years, with intervening troughs of comparable length. Some magmatic peaks are observed on multiple cratons, either by coincidence or because of paleogeographic proximity and common tectonic setting, while others are not. The best overall correlation, 0.617, is observed between Baltica and Amazonia, consistent with (but not definitive proof of) their being close neighbours in a SAMBA-like configuration at least in Columbia, and perhaps having shared the same peri-Columbian subduction system for a considerable time. Correlation factors between Laurentia and Baltica, or Laurentia and Amazonia, are below 0.14. Comparison between the Grenville Province in northeastern Laurentia and the Sveconorwegian Province in southwestern Fennoscandia (Baltica) shows some striking similarities, especially in the Mesoproterozoic, but also exhibits differences in the timing of events, especially during the final Grenville-Sveconorwegian collision, when the Sveconorwegian evolution seems to lag behind by some tens of million years. Between the other cratons, the evolution before and during the final Grenvillian collision is also largely diachronous. After 900 Ma, magmatic activity had ceased in all areas investigated, attesting to the position of most of them within the stable interior of Rodinia.publishedVersio

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale

© 2018 International Society for Microbial Ecology All rights reserved. Disease emergence events regularly result from human activities such as agriculture, which frequently brings large populations of genetically uniform hosts into contact with potential pathogens. Although viruses cause nearly 50% of emerging plant diseases, there is little systematic information about virus distribution across agro-ecological interfaces and large gaps in understanding of virus diversity in nature. Here we applied a novel landscape-scale geometagenomics approach to examine relationships between agricultural land use and distributions of plant-associated viruses in two Mediterranean-climate biodiversity hotspots (Western Cape region of South Africa and Rhône river delta region of France). In total, we analysed 1725 geo-referenced plant samples collected over two years from 4.5 × 4.5 km 2 grids spanning farmlands and adjacent uncultivated vegetation. We found substantial virus prevalence (25.8-35.7%) in all ecosystems, but prevalence and identified family-level virus diversity were greatest in cultivated areas, with some virus families displaying strong agricultural associations. Our survey revealed 94 previously unknown virus species, primarily from uncultivated plants. This is the first effort to systematically evaluate plant-associated viromes across broad agro-ecological interfaces. Our findings indicate that agriculture substantially influences plant virus distributions and highlight the extent of current ignorance about the diversity and roles of viruses in nature