Reactive oxygen species (ROS) mediated enhanced anti-candidal activity of ZnS-ZnO nanocomposites with low inhibitory concentrations

Enhanced antifungal activity against the yeast species Candida albicans, Candida tropicalis and Saccharomyces cerevisiae was displayed by ZnS-ZnO nanocomposites prepared by a simple precipitation technique. The antifungal activity was significantly more in the presence of indoor light than under dark conditions and was a clear confirmation of the inhibitory role of reactive oxygen species (ROS) generated in situ by the photocatalytic nanocomposites. The generation of ROS was further evidenced by flow cytometry results and membrane permeabilisation studies. Time kill assay and growth curve analysis indicated diminished antifungal activity under dark conditions due primarily to Zn2+ efflux in solution. © 2015 The Royal Society of Chemistry

Studies on soil fertility status of coffee growing regions in Wayanad district

Top soil in Wayanad region is prone to disturbance and erosion, as the coffee growers’ practice scraping, scuffling and cover digging. It isnecessary to conserve the inherent fertility of top soil by minimum disturbance during farming operations. Otherwise soil deterioration can become one of the major constraints for crop production in the present day exploitative cultivation of plantation crops. It is well known that nutrient availability is influenced by their distribution in the soil as well as other soil characteristics. Soil fertility is the key to meet the nutrient requirement of the crops. Soil test based nutrient management will increase the crop productivity there by helping to save the fertility. The study, carried out to understand the fertility status of the coffee soils, revealed a higher acidity (98%) with deficiencies of calcium (32%), magnesium (96%) and boron (31%) limiting the coffee productivity in the district. The coffee area in the district is strongly acidic (69%) due to lack of liming and continuous use of acid producing fertilizers. Fifty per cent of soil sampleswere high in phosphorus which in turn impair the nutrient balance and affects micronutrient absorption by plants. Deficiency of calcium and magnesium affects uptake of other nutrients which upsets cellular functions. In coffee, boron deficiency will reduce the productivity by affecting flowering and fruit set. Amelioration of soil acidity and optimal use of major, secondary and micronutrients are must to enhance coffee productivity in the district. Application of manures and fertilizers based on soil test values will save the fertilizers and also sustain the soil health. Integrated management of plant nutrients is essential to achieve sustainable coffee crop production

Geographic and Within Tree Variation for Wood Properties in Acrocarpus fraxinifolius Wight and Arn. Populations

1049-1055The study was conducted to compare the wood parameters among nine populations of Acrocarpus fraxinifolius from Southern Karnataka. To understand the variation, three trees from each population were selected and different wood properties, viz., bark-thickness, wood density, specific gravity, fibre parameters and vessel parameters, were analysed. The basic wood density of species was ranged between 0.370 g∙cc−1 to 0.580 g∙cc−1. There was a significant difference in fibre length across the populations, with an average fibre length of 1225.49 μm. There was not much difference in fibre width, fibre lumen width and fibre wall thickness. Vessel parameters, except vessel wall thickness varied among the populations. The vessel length varied from 104.78 μm to 124.71 μm. The wood traits varied among the radial portion i.e., from pith to periphery region. Considering the important wood traits, Shreemangala and Balehonnuru populations were found to be better compared to other populations

Concept, Design and Implementation of a Cardiovascular Gene-Centric 50 K SNP Array for Large-Scale Genomic Association Studies

A wealth of genetic associations for cardiovascular and metabolic phenotypes in humans has been accumulating over the last decade, in particular a large number of loci derived from recent genome wide association studies (GWAS). True complex disease-associated loci often exert modest effects, so their delineation currently requires integration of diverse phenotypic data from large studies to ensure robust meta-analyses. We have designed a gene-centric 50 K single nucleotide polymorphism (SNP) array to assess potentially relevant loci across a range of cardiovascular, metabolic and inflammatory syndromes. The array utilizes a “cosmopolitan” tagging approach to capture the genetic diversity across ∼2,000 loci in populations represented in the HapMap and SeattleSNPs projects. The array content is informed by GWAS of vascular and inflammatory disease, expression quantitative trait loci implicated in atherosclerosis, pathway based approaches and comprehensive literature searching. The custom flexibility of the array platform facilitated interrogation of loci at differing stringencies, according to a gene prioritization strategy that allows saturation of high priority loci with a greater density of markers than the existing GWAS tools, particularly in African HapMap samples. We also demonstrate that the IBC array can be used to complement GWAS, increasing coverage in high priority CVD-related loci across all major HapMap populations. DNA from over 200,000 extensively phenotyped individuals will be genotyped with this array with a significant portion of the generated data being released into the academic domain facilitating in silico replication attempts, analyses of rare variants and cross-cohort meta-analyses in diverse populations. These datasets will also facilitate more robust secondary analyses, such as explorations with alternative genetic models, epistasis and gene-environment interactions

Large-Scale Gene-Centric Meta-Analysis across 39 Studies Identifies Type 2 Diabetes Loci

To identify genetic factors contributing to type 2 diabetes (T2D), we performed large-scale meta-analyses by using a custom similar to 50,000 SNP genotyping array (the ITMAT-Broad-CARe array) with similar to 2000 candidate genes in 39 multiethnic population-based studies, case-control studies, and clinical trials totaling 17,418 cases and 70,298 controls. First, meta-analysis of 25 studies comprising 14,073 cases and 57,489 controls of European descent confirmed eight established T2D loci at genome-wide significance. In silico follow-up analysis of putative association signals found in independent genome-wide association studies (including 8,130 cases and 38,987 controls) performed by the DIAGRAM consortium identified a T2D locus at genome-wide significance (GATAD2A/CILP2/PBX4; p = 5.7 x 10(-9)) and two loci exceeding study-wide significance (SREBF1, and TH/INS; p <2.4 x 10(-6)). Second, meta-analyses of 1,986 cases and 7,695 controls from eight African-American studies identified study-wide-significant (p = 2.4 x 10(-7)) variants in HMGA2 and replicated variants in TCF7L2 (p = 5.1 x 10(-15)). Third, conditional analysis revealed multiple known and novel independent signals within five T2D-associated genes in samples of European ancestry and within HMGA2 in African-American samples. Fourth, a multiethnic meta-analysis of all 39 studies identified T2D-associated variants in BCL2 (p = 2.1 x 10(-8)). Finally, a composite genetic score of SNPs from new and established T2D signals was significantly associated with increased risk of diabetes in African-American, Hispanic, and Asian populations. In summary, large-scale meta-analysis involving a dense gene-centric approach has uncovered additional loci and variants that contribute to T2D risk and suggests substantial overlap of T2D association signals across multiple ethnic groups

Causal Effects of Body Mass Index on Cardiometabolic Traits and Events: A Mendelian Randomization Analysis

(The American Journal of Human Genetics 94, 198–208; February 6, 2014

Bifunctional lanthanum phosphate substrates as novel adsorbents and biocatalyst supports for perchlorate removal

Porous lanthanum phosphate substrates, obtained by an environmentally benign colloidal forming process employing methyl cellulose, are reported here as excellent adsorbents of perchlorate with &gt;98% efficiency and with 100% reusability. Additionally, the effectiveness of such substrates as biocatalyst supports that facilitate biofilm formation of perchlorate reducing microbes (Serratia marcescens NIIST 5) is also demonstrated for the first time. The adsorption of perchlorate ions is attributed to the pore structure of lanthanum phosphate substrate and the microbial attachment is primarily ascribed to its intrinsic hydrophobic property. Lanthanum phosphate thus emerges as a dual functional material that possesses an integrated adsorption/bioremediation property for the effective removal of ClO4- which is an increasingly important environmental contaminant. © 2014 Elsevier B.V