The fate of xylem-transported CO2 in plants

The concentration of carbon dioxide in tree stems can be ~30-750 times higher than current atmospheric [CO2]. Dissolved inorganic carbon enters the xylem from root and stem respiration and travels with water through the plant. However, the fate of much of this xylem-transported CO2 is unknown. In these studies I examined the fate of xylem-transported CO2 traveling through the petiole and leaf. This was accomplished by placing cut leaves from a woody and herbaceous C3 species, and a Kranz-type C4 species, in a solution of dissolved NaH13CO3 at concentrations similar to those measured in nature. This allowed me to track the efflux of 13CO2 using tunable diode laser absorption spectroscopy and compare this with 12CO2 fluxes derived from plant metabolism. The objective of the first study was to measure the efflux of xylem-transported CO2 out of the woody species Populus deltoides and the herbaceous C3 species Brassica napus in the dark by testing the relationship among the concertation of bicarbonate in the xylem, the rate of transpiration, and the rate of gross CO2 efflux. I found when the concentration of CO2 in the xylem is high and when the rate of transpiration is also high, the magnitude of 13CO2 efflux can approach half of the rate of respiration in the dark. The second study extends measurements of the fate of xylem-transported CO2 into lighted conditions where photosynthesis is active. I measured 12CO2 and 13CO2 fluxes across light- and CO2-response curves with the objectives of: 1) determining how much and under what conditions xylem-transported CO2 exited cut leaves in the light, and 2) determining how much xylem-transported CO2 was used for photosynthesis and when the overall contribution to photosynthesis was most important. I found that in the light the contribution of xylem-transported CO2 is most important when intercellular [CO2] is low which occurs under high irradiance and low [CO2]. The last study focused on the efflux and use of xylem-transported CO2 in the Kranz-type C4 species, Amaranthus hypochondriacus. Species with Kranz anatomy have highly active photosynthetic cells surrounding the vascular bundle, which is where xylem-transported CO2 would first interact with photosynthetic cells. The objectives of this study were to determine: 1) the rate and total efflux of xylem-transported CO2 exiting a cut leaf of the Kranz-type C4 species, A. hypochondriacus, in the dark and 2) the rate and contribution of xylem-transported CO2 to total assimilation in the light for A. hypochondriacus. Rates of dark efflux of xylem-transported CO2 out of A. hypochondriacus leaves were lower in the dark compared to rates observed in B. napus across the same rates of transpiration and bicarbonate concentrations. In the light a higher portion of xylem-transported CO2 was used for photosynthesis in A. hypochondriacus compared to B. napus suggesting that Kranz anatomy influences how C4 plants use xylem-transported CO2 for photosynthesis

Network Extender for MIL-STD-1553 Bus

An extender system for MIL-STD-1553 buses transparently couples bus components at multiple developer sites. The bus network extender is a relatively inexpensive system that minimizes the time and cost of integration of avionic systems by providing a convenient mechanism for early testing without the need to transport the usual test equipment and personnel to an integration facility. This bus network extender can thus alleviate overloading of the test facility while enabling the detection of interface problems that can occur during the integration of avionic systems. With this bus extender in place, developers can correct and adjust their own hardware and software before products leave a development site. Currently resident at Johnson Space Center, the bus network extender is used to test the functionality of equipment that, although remotely located, is connected through a MILSTD- 1553 bus. Inasmuch as the standard bus protocol for avionic equipment is that of MIL-STD-1553, companies that supply MIL-STD-1553-compliant equipment to government or industry and that need long-distance communication support might benefit from this network bus extende

The physiological basis for genetic variation in water use efficiency and carbon isotope composition in Arabidopsis thaliana.

Ecologists and physiologists have documented extensive variation in water use efficiency (WUE) in Arabidopsis thaliana, as well as association of WUE with climatic variation. Here, we demonstrate correlations of whole-plant transpiration efficiency and carbon isotope composition (δ(13)C) among life history classes of A. thaliana. We also use a whole-plant cuvette to examine patterns of co-variation in component traits of WUE and δ(13)C. We find that stomatal conductance (g s) explains more variation in WUE than does A. Overall, there was a strong genetic correlation between A and g s, consistent with selection acting on the ratio of these traits. At a more detailed level, genetic variation in A was due to underlying variation in both maximal rate of carboxylation (V cmax) and maximum electron transport rate (Jmax). We also found strong effects of leaf anatomy, where lines with lower WUE had higher leaf water content (LWC) and specific leaf area (SLA), suggesting a role for mesophyll conductance (g m) in variation of WUE. We hypothesize that this is due to an effect through g m, and test this hypothesis using the abi4 mutant. We show that mutants of ABI4 have higher SLA, LWC, and g m than wild-type, consistent with variation in leaf anatomy causing variation in g m and δ(13)C. These functional data also add further support to the central, integrative role of ABI4 in simultaneously altering ABA sensitivity, sugar signaling, and CO2 assimilation. Together our results highlight the need for a more holistic approach in functional studies, both for more accurate annotation of gene function and to understand co-limitations to plant growth and productivity

The Preliminary Archeological Inventory of the Savannah River Plant, Aiken and Barnwell Counties, South Carolina

Archeological investigations were conducted on the Savannah River Plant in Aiken and Barnwell Counties, South Carolina under contract with the United States Department of Energy by the Institute of Archeology and Anthropology, University of South Carolina. The purpose of the study was to perform a reconnaissance and prepare a preliminary inventory of archeological sites in the plant in order to provide land use planning information. During three 2.5 month field seasons, 309 discrete sites were located and recorded within the plant boundaries using an opportunistic sampling strategy which focused on disturbed and exposed ground surfaces in the 200,000 acre study area. Approximately 450 linear miles, representing only a small portion of the plant (less than 10%), were covered in the fieldwork. Results of the survey were primarily of three kinds. First, 3 site classes--those related to base settlements, large limited activity, and small limited activity functions--were determined. Second, 141 occupational components, spanning the Early Archaic through the Historic Periods, were recognized at 103 sites. Occupational density appears to have been greatest during the Woodland Period from 1000 B.C. to about A.D. 1000. The third research area involved an inspection of occupational variability within five environmental zones (Upland, Slope, Dry Terrace, Flooded Terrace and Floodplain) to describe changes in land use. No significant variation between time periods was recognized, indicating similar land use patterns relating to hunting and gathering. Highest site frequencies occurred in the Dry Terrace and Floodplain Zones, which suggests a focus of all major settlements in high potential resource zones. In general, the information in this report presents the largest site survey data base known for the Savannah River below the Fall Line and is therefore of importance to the local prehistory.https://scholarcommons.sc.edu/archanth_books/1146/thumbnail.jp

Ecosystem respiration: Drivers of daily variability and background respiration in lakes around the globe

We assembled data from a global network of automated lake observatories to test hypotheses regarding the drivers of ecosystem metabolism. We estimated daily rates of respiration and gross primary production (GPP) for up to a full year in each lake, via maximum likelihood fits of a free‐water metabolism model to continuous high‐frequency measurements of dissolved oxygen concentrations. Uncertainties were determined by a bootstrap analysis, allowing lake‐days with poorly constrained rate estimates to be down‐weighted in subsequent analyses. GPP and respiration varied considerably among lakes and at seasonal and daily timescales. Mean annual GPP and respiration ranged from 0.1 to 5.0 mg O2 L−1 d−1 and were positively related to total phosphorus but not dissolved organic carbon concentration. Within lakes, significant day‐to‐day differences in respiration were common despite large uncertainties in estimated rates on some lake‐days. Daily variation in GPP explained 5% to 85% of the daily variation in respiration after temperature correction. Respiration was tightly coupled to GPP at a daily scale in oligotrophic and dystrophic lakes, and more weakly coupled in mesotrophic and eutrophic lakes. Background respiration ranged from 0.017 to 2.1 mg O2 L−1 d−1 and was positively related to indicators of recalcitrant allochthonous and autochthonous organic matter loads, but was not clearly related to an indicator of the quality of allochthonous organic matter inputs

Genome sequence analysis of La Crosse virus and in vitro and in vivo phenotypes

<p>Abstract</p> <p>Background</p> <p>La Crosse virus (LACV), family <it>Bunyaviridae</it>, is a mosquito-borne virus recognized as a major cause of pediatric encephalitis in North America with 70–130 symptomatic cases each year. The virus was first identified as a human pathogen in 1960 after its isolation from a 4 year-old girl who suffered encephalitis and died in La Crosse, Wisconsin. The majority of LACV infections are mild and never reported, however, serologic studies estimate infection rates of 10–30/100,000 in endemic areas.</p> <p>Results</p> <p>In the present study, sequence analysis of the complete LACV genomes of low-passage LACV/human/1960, LACV/mosquito/1978, and LACV/human/1978 strains and of biologically cloned derivatives of each strain, indicates that circulating LACVs are genetically stable over time and geographic distance with 99.6–100%, 98.9–100%, 97.8–99.6%, and 99.2–99.7% amino acid identity for N, NsS, M polyprotein, and L proteins respectively. We identified 5 amino acid differences in the RNA polymerase and 4 nucleotide differences in the non-coding region of the L segment specific to the human virus isolates, which may result in altered disease outcomes.</p> <p>Conclusion</p> <p>All three wild type viruses had similar <it>in vitro </it>growth kinetics and phenotypes in mosquito C6/36 and Vero cells, and similar levels of neurovirulence and neuroinvasiveness in Swiss Webster mice. The biologically cloned derivative of LACV/human/1960 was significantly less neuroinvasive than its uncloned parent and differed in sequence at one amino acid position in the G_Nglycoprotein, identifying this residue as an attenuating mutation.</p

Preplant 1,3-D treatments test well for perennial crop nurseries, but challenges remain

Preplant fumigation with methyl bromide commonly is used in open-field perennial crop nurseries in California for control of plant-parasitic nematodes, pathogens and weeds. Because this fumigant is being phased out, alternatives are needed to ensure the productivity of the perennial crop nursery industry as well as the ornamental, orchard and vineyard production systems that depend on clean planting stock. As part of the USDA Area-Wide Pest Management Program for Integrated Methyl Bromide Alternatives, several perennial crop nursery projects were conducted in California from 2007 to 2011 to test and demonstrate registered alternative fumigants and application techniques that maximize performance and minimize environmental impacts. The project was designed to evaluate shank application and soil surface sealing methods intended to reduce aboveground emission and improve soil performance of 1,3-dichloropropene, a leading methyl bromide alternative for nurseries. In these garden rose and tree nursery experiments, 1,3-dichloropropene treatments performed well regardless of application techniques. In this article, we highlight recent research and discuss the significance and remaining challenges for adoption of methyl bromide alternatives in this unique nursery stock production system

The Mahogany Peaks fault, a late Cretaceous-Paleocene(?) normal fault in the hinterland of the Sevier orogen

The contact separating Ordovician rocks from the underlying lower part of the Raft River Mountains sequence, northwestern Utah, is reinterpreted as a large-displacement low-angle normal fault, the Mahogany Peaks fault, that excised 4-5 km of structural section. High delta(13)C values identified in marble in the lower part of the Raft River Mountains sequence suggest a Proterozoic, rather than Cambrian age. Metamorphic conditions of hanging wall Ordovician and footwall Proterozoic strata are upper greenschist and middle amphibolite facies, respectively, and quantitative geothermometry indicates a temperature discontinuity of about 100 degrees C. A discordance in muscovite Ar-40/Ar-39 cooling ages between hanging wall and footwall strata in eastern exposures, and the lack of a corresponding cooling age discordance in western exposures, suggest a component of west dip for the fault. The juxtaposition of younger over older and colder over hotter rocks, the muscovite cooling age discordance with older over younger, and top-to-the-west shearing down-structure are consistent with an extensional origin. The age of faulting is bracketed between 90 and 47 Ma, and may be synchronous with footwall cooling at about 60-70 Ma. Recognition of the Mahogany Peaks fault, its extensional origin, and its probable latest Cretaceous to Paleocene age provides further evidence that episodes of extension at mid-crustal levels in the hinterland of the Sevier orogenic belt were synchronous with protracted shortening in the foreland fold and thrust belt, and that the Sevier orogen acted as a dynamic orogenic wedge

Development of Department Writing Guide for Civil Engineering

This paper describes the development of a writing guide for a civil engineering department. Motivation for developing a writing guide came from several sources. Freshmen enrolled in an introduction to civil engineering course turned in writing assignments demonstrating a need for improvement. The introductory course is frequently taken concurrently with a required freshman level writing class and well before a required discipline specific advanced writing class, so this was generally expected. Continued issues in junior and senior level classes, however, have clarified the need for additional program focus on written communication. Students have continually expressed frustration at having to adapt to varying lab report expectations from different faculty members and, most importantly, capstone design reports have demonstrated that student writing is not at industry expectations. The writing guide was a collaborative effort between civil engineering faculty and writing studies faculty. The initial phase focused on defining the content of the writing guide: reports (lab, project, etc.), memos, homework submittals, figures, tables, equations, professional e-mails, and references. The second phase was to develop an outline for the rubrics; the goal was for the rubrics to be general enough to be adapted by each faculty member for a given assignment, but still provide students with a consistent outline to assess their writing prior to submitting it for grade. Finally, in the third phase, the level of detail in the writing guide was discussed. In order to be useful, the writing guide was made specific enough for the students to use it to successfully complete writing assignments but general enough to allow individual faculty to adapt assignments toward the specific outcomes in each course. Above all else, the main goal of the writing guide is to prepare students for real world written communication. Therefore, it must not leave students with the impression that there is a template that can be applied regardless of audience. These concerns were considered during the development of the writing guide and will be part of in-class writing instruction within both civil engineering and writing courses. Written work will be assessed using both university and ABET assessment processes. Example work collected as part of the ABET process from the Fall 2012 semester will be retroactively assessed using the newly developed rubrics. In addition, Fall 2014 work will be assessed as it is submitted. Spring 2015 work will represent the first semester using the department writing guide. Pre-writing guide assessments will be compared to assessments of writing after the department guide is introduced. By comparing work over the next several years, senior year writing submittals will be used to determine if a greater level of competency was achieved by students exposed to the writing guide for their entire undergraduate experience as compared to students who received the writing guide late in their undergraduate career

Applying phylogenomics to understand the emergence of Shiga Toxin producing Escherichia coli O157:H7 strains causing severe human disease in the United Kingdom

Shiga Toxin producing Escherichia coli (STEC) O157:H7 is a recently emerged zoonotic pathogen with considerable morbidity. Since the serotype emerged in the 1980s, research has focussed on unravelling the evolutionary events from the E. coli O55:H7 ancestor to the contemporaneous globally dispersed strains. In this study the genomes of over 1000 isolates from human clinical cases and cattle, spanning the history of STEC O157:H7 in the United Kingdom were sequenced. Phylogenetic analysis reveals the ancestry, key acquisition events and global context of the strains. Dated phylogenies estimate the time to the most recent common ancestor of the current circulating global clone to 175 years ago, followed by rapid diversification. We show the acquisition of specific virulence determinates occurred relatively recently and coincides with its recent detection in the human population. Using clinical outcome data from 493 cases of STEC O157:H7 we assess the relative risk of severe disease including HUS from each of the defined clades in the population and show the dramatic effect Shiga toxin complement has on virulence. We describe two strain replacement events that have occurred in the cattle population in the UK over the last 30 years; one resulting in a highly virulent strain that has accounted for the majority of clinical cases in the UK over the last decade. This work highlights the need to understand the selection pressures maintaining Shiga-toxin encoding bacteriophages in the ruminant reservoir and the study affirms the requirement for close surveillance of this pathogen in both ruminant and human populations