On the occurrence of bryophytes and macrolichens in different lowland rain forest types at Mabura Hill, Guyana

A floristic and ecological study of bryophytes and macrolichens in different lowland rain forest types around Mabura Hill, Guyana, South America, yielded 170 species: 52 mosses, 82 liverworts and 36 macrolichens. Lejeuneaceae account for about 30% of the species and are the dominant cryptogamic family of the lowland rain forest. Special attention was paid to the flora of the forest canopy, by using mountaineering techniques. It appeared that 50% of the bryophyte species and 86% of the macrolichens occurred exclusively in the canopy. Dry evergreen 'walaba' forest on white sand is particularly rich in lichens whereas the more humid 'mixed' forest on loamy soil is characterized by a rather rich liverwort flora. More species are exclusive to the mixed forest than to dry evergreen forest due to the 'canopy effect', i.e. the occurrence of xerophytic species in the outer canopy of both dry and humid forests. Furthermore, canopy species have wider vertical distributions on trees in the dry evergreen forest than in the mixed forest, due to the more open canopy foliage of the dry evergreen forest

Sixteen years of simulated summer and winter warming have contrasting effects on soil mite communities in a sub-Arctic peat bog

Northern peatlands are very sensitive to changes in climate. Impacts of increased temperatures on hydrology, vegetation structure and soil carbon are already well documented from northern peatlands. In contrast, effects of global warming on soil mites, and seasonal effects in particular, have received less attention, even though soil mites are an important component in ecosystems as they contribute to nutrient dynamics and decomposition. We investigated the impacts of long-term (16 years) experimental seasonal climate manipulations (summer warming, winter warming with snow accumulation, and year-round warming) on oribatid (Oribatida) and mesostigmatid (Mesostigmata) mite communities in a peat bog underlain by discontinuous permafrost, in Abisko, Northern Sweden. We found that (1) Year-round warming treatment had neither impact on life-history trait compositions nor on total abundances of oribatid mites, possibly because of opposite effects of summer and winter warming; (2) Small-bodied oribatid mites, in particular those belonging to genera Suctobelba, increased in abundance under the summer warming treatment; (3) The species richness of oribatid mites was negative affected by year-round warming; (4) Mesostigmatid mites, which were not identified to species level, were found to decrease in abundance under year-round warming. Because different mite taxa with different body sizes and diets play distinct roles in carbon and nutrient dynamics, the observed changes in mite communities may impact ecosystem functions in northern peatlands.</p

Liana litter decomposes faster than tree litter in a multispecies and multisite experiment

1. Lianas account for a small fraction of forest biomass, but their contribution to leaf or litter biomass and thus to food webs can be substantial. Globally liana exhibit fast life-history traits. Thus, liana litter may decompose faster than tree litter, and could enhance the decomposition of tree litter (complementarity effect). The differences in decomposition may also vary with mesofauna access or across forest communities. The contribution of these factors to nutrient biogeochemical cycling is poorly understood. 2. We examined the decomposition of litter of 20 liana and 20 tree species of three different tropical forest communities in southern China, over 1 year. (i) We incubated the litter in bags with coarse and fine mesh to distinguish mesofaunal and microfaunal effects. (ii) We used single-species litter bags to compare decomposition rates of lianas and trees, to test which functional traits best explained decomposition, and whether those traits differed between lianas and trees, and among forest types. (iv) We used mixed-species litter bags to test whether liana litter enhances decomposition in litter mixtures. (v) We evaluated how leaf litter nutrients decayed in relation to litter mass. 3. Litter decayed faster in coarse-mesh than fine-mesh bags, but there was no interaction effect with forest type or growth form. Liana litter decayed faster than tree litter in single-species bags with mesofauna access and in mixed bags (liana-only mix, tree-only mix) without mesofauna. Lianas had higher nitrogen content and specific leaf area and lower leaf dry matter content (LDMC) and toughness than trees. Decomposition rate was significantly negatively related to LDMC. Litter of evergreen broadleaved forest decomposed slower than that of other forest types. Liana litter did not enhance the decomposition of tree litter in mixtures. Liana litter released calcium slightly faster than trees. 4. Synthesis: Leaf litter decomposes faster for lianas than trees, despite high variability of traits and decomposition rates within each growth form and overlap between growth forms, and we found no evidence for the complementarity hypothesis. Our study sheds light on the potential role of lianas within brown food webs and their importance on terrestrial biogeochemistry

Functional resilience against climate-driven extinctions: comparing the functional diversity of European and North Americantree floras

Future global change scenarios predict a dramatic loss of biodiversity for many regions in the world, potentially reducing the resistance and resilience of ecosystem functions. Once before, during Plio-Pleistocene glaciations, harsher climatic conditions in Europe as compared to North America led to a more depauperate tree flora. Here we hypothesize that this climate driven species loss has also reduced functional diversity in Europe as compared to North America. We used variation in 26 traits for 154 North American and 66 European tree species and grid-based co-occurrences derived from distribution maps to compare functional diversity patterns of the two continents. First, we identified similar regions with respect to contemporary climate in the temperate zone of North America and Europe. Second, we compared the functional diversity of both continents and for the climatically similar subregions using the functional dispersion-index (FDis) and the functional richness index (FRic). Third, we accounted in these comparisons for grid-scale differences in species richness, and, fourth, investigated the associated trait spaces using dimensionality reduction. For gymnosperms we find similar functional diversity on both continents, whereas for angiosperms functional diversity is significantly greater in Europe than in North America. These results are consistent across different scales, for climatically similar regions and considering species richness patterns. We decomposed these differences in trait space occupation into differences in functional diversity vs. differences in functional identity. We show that climate-driven species loss on a continental scale might be decoupled from or at least not linearly related to changes in functional diversity. This might be important when analyzing the effects of climate-driven biodiversity change on ecosystem functioning

The functional trait spectrum of European temperate grasslands

Questions: What is the functional trait variation of European temperate grasslands and how does this reflect global patterns of plant form and function? Do habitat specialists show trait differentiation across habitat types?. Location: Europe. Methods: We compiled 18 regeneration and non-regeneration traits for a continental species pool consisting of 645 species frequent in five grassland types. These grassland types are widely distributed in Europe but differentiated by altitude, soil bedrock and traditional long-term management and disturbance regimes. We evaluated the multivariate trait space of this entire species pool and compared multi-trait variation and mean trait values of habitat specialists grouped by grassland type. Results: The first dimension of the trait space accounted for 23% of variation and reflected a gradient between fast-growing and slow-growing plants. Plant height and SLA contributed to both the first and second ordination axes. Regeneration traits mainly contributed to the second and following dimensions to explain 56% of variation across the first five axes. Habitat specialists showed functional differences between grassland types mainly through non-regeneration traits. Conclusions: The trait spectrum of plants dominating European temperate grasslands is primarily explained by growth strategies which are analogous to the trait variation observed at the global scale, and secondly by regeneration strategies. Functional differentiation of habitat specialists across grassland types is mainly related to environmental filtering linked with altitude and disturbance. This filtering pattern is mainly observed in non-regeneration traits, while most regeneration traits demonstrate multiple strategies within the same habitat type.EL, BJA, MTI, AM, PI and CB acknowledge the research leading to these results has received funding from the People Programme (Marie Curie Actions) of the European Union's Seventh Framework Programme FP7/2007–2013 under REA grant agreement no. 607785, as a part of the NAtive Seed Science TEchnology and Conservation (NASSTEC) Initial Training Network (ITN). BJA was further funded by the Marie Curie Clarín‐COFUND program of the Principality of Asturias and the European Union (ACB17‐26). BJA and HB acknowledge support from the German Centre for Integrative Biodiversity Research (iDiv) Halle–Jena–Leipzig funded by the German Research Foundation (DFTG FZT 118) through the sPlot research platform. PI acknowledges support from the Rural & Environment Science & Analytical Services Division of the Scottish Government. KÖ thanks RO1567‐IBB03/2018 for financial support

Osteoblasts secrete miRNA-containing extracellular vesicles that enhance expansion of human umbilical cord blood cells

Osteolineage cells represent one of the critical bone marrow niche components that support maintenance of hematopoietic stem and progenitor cells (HSPCs). Recent studies demonstrate that extracellular vesicles (EVs) regulate stem cell development via horizontal transfer of bioactive cargo, including microRNAs (miRNAs). Using next-generation sequencing we show that human osteoblast-derived EVs contain highly abundant miRNAs specifically enriched in EVs, including critical regulators of hematopoietic proliferation (e.g., miR-29a). EV treatment of human umbilical cord blood-derived CD34 + HSPCs alters the expression of candidate miRNA targets, such as HBP1, BCL2 and PTEN. Furthermore, EVs enhance proliferation of CD34 + cells and their immature subsets in growth factor-driven ex vivo expansion cultures. Importantly, EV-expanded cells retain their differentiation capacity in vitro and successfully engraft in vivo. These discoveries reveal a novel osteoblast-derived EV-mediated mechanism for regulation of HSPC proliferation and warrant consideration of EV-miRNAs for the development of expansion strategies to treat hematological disorders

Stem Trait Spectra Underpin Multiple Functions of Temperate Tree Species

A central paradigm in comparative ecology is that species sort out along a slow-fast resource economy spectrum of plant strategies, but this has been rarely tested for a comprehensive set of stem traits and compartments. We tested how stem traits vary across wood and bark of temperate tree species, whether a slow-fast strategy spectrum exists, and what traits make up this plant strategy spectrum. For 14 temperate tree species, 20 anatomical, chemical, and morphological traits belonging to six key stem functions were measured for three stem compartments (inner wood, outer wood, and bark). The trait variation was explained by major taxa (38%), stem compartments (24%), and species within major taxa (19%). A continuous plant strategy gradient was found across and within taxa, running from hydraulic safe gymnosperms to conductive angiosperms. Both groups showed a second strategy gradient related to chemical defense. Gymnosperms strongly converged in their trait strategies because of their uniform tracheids. Angiosperms strongly diverged because of their different vessel arrangement and tissue types. The bark had higher concentrations of nutrients and phenolics whereas the wood had stronger physical defense. The gymnosperms have a conservative strategy associated with strong hydraulic safety and physical defense, and a narrow, specialized range of trait values, which allow them to grow well in drier and unproductive habitats. The angiosperm species show a wider trait variation in all stem compartments, which makes them successful in marginal- and in mesic, productive habitats. The associations between multiple wood and bark traits collectively define a slow-fast stem strategy spectrum as is seen also for each stem compartment

Lipid-mediated Wnt protein stabilization enables serum-free culture of human organ stem cells

Wnt signalling proteins are essential for culture of human organ stem cells in organoids, but most Wnt protein formulations are poorly active in serum-free media. Here we show that purified Wnt3a protein is ineffective because it rapidly loses activity in culture media due to its hydrophobic nature, and its solubilization requires a detergent, CHAPS (3-[(3-cholamidopropyl) dimethylammonio]-1-propanesulfonate), that interferes with stem cell self-renewal. By stabilizing the Wnt3a protein using phospholipids and cholesterol as carriers, we address both problems: Wnt activity remains stable in serum-free media, while non-toxic carriers allow the use of high Wnt concentrations. Stabilized Wnt3a supports strongly increased self-renewal of organ and embryonic stem cells and the serum-free establishment of human organoids from healthy and diseased intestine and liver. Moreover, the lipophilicity of Wnt3a protein greatly facilitates its purification. Our findings remove a major obstacle impeding clinical applications of adult stem cells and offer advantages for all cell culture uses of Wnt3a protein

Identification of osteolineage cell-derived extracellular vesicle cargo implicated in hematopoietic support

Osteolineage cell-derived extracellular vesicles (EVs) play a regulatory role in hematopoiesis and have been shown to promote the ex vivo expansion of human hematopoietic stem and progenitor cells (HSPCs). Here, we demonstrate that EVs from different human osteolineage sources do not have the same HSPC expansion promoting potential. Comparison of stimulatory and non-stimulatory osteolineage EVs by next-generation sequencing and mass spectrometry analyses revealed distinct microRNA and protein signatures identifying EV-derived candidate regulators of ex vivo HSPC expansion. Accordingly, the treatment of umbilical cord blood-derived CD34+ HSPCs with stimulatory EVs-altered HSPC transcriptome, including genes with known roles in cell proliferation. An integrative bioinformatics approach, which connects the HSPC gene expression data with the candidate cargo in stimulatory EVs, delineated the potentially targeted biological functions and pathways during hematopoietic cell expansion and development. In conclusion, our study giv

BioTIME: A database of biodiversity time series for the Anthropocene.

MotivationThe BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables includedThe database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grainBioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2).Time period and grainBioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.Major taxa and level of measurementBioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.Software format.csv and .SQL