Using action cameras to assess habitat use by Pseudobarbus afer and Sandelia capensis in the Swartkops River, Eastern Cape, South Africa

Currently, freshwater systems are facing various threats, freshwater biota are declining and there is an increased need to monitor freshwater fauna and flora using non-invasive methods. This thesis aimed to evaluate the potential of using action cameras as a tool for the monitoring of freshwater fish populations and the collection of habitat utilisation data. This evaluation was conducted in headwater tributaries of the Swartkops River in South Africa, using two threatened species that have not been extensively studied, Pseudobarbus afer (Peters, 1864) and Sandelia capensis (Cuvier, 1831). The aims of this study were to: (1) assess the use of underwater video analysis (UWVA) using action cameras (videos and still photographs) in comparison to estimates derived from snorkel surveys, to estimate the abundance of P. afer in headwater streams; (2) use estimates derived from UWVA (videos and photographs) to assess the habitat use of two imperilled species, P. afer and S. capensis; and (3) assess habitat use by these two species in the presence of an artificial habitat. This work demonstrated that: (1) estimates derived from videos and photographs were strongly correlated to estimates derived from snorkel surveys, provided multiple cameras were used; (2) estimates derived from videos and photographs were not significantly different to estimates derived from snorkel surveys; (3) a filming period of 15 minutes was sufficient at detecting 0.9 of the cumulative mMaxN (mean MaxN) within one of the five habitats; and (4) still photographs, which are less time consuming to process than videos, could be used in preference to videos. Based on these findings, techniques using action cameras to assess habitat utilisation and behaviour in situ of the two-focal species, were developed using six habitat types (inflow, outflow, woody debris, fern root, middle and artificial) in four pools. It was demonstrated that: (1) there was a significant difference in proportional occupancies across habitats for both P. afer and S. capensis; (2) Pseudobarbus afer were mainly observed schooling in the middle of the pool and feeding on detritus material in fern root, woody debris and off the artificial structure; and (3) Sandelia capensis rapidly colonised the artificial structure and were observed utilising it for refuge. In conclusion, this work demonstrated that still photographs from action cameras can be used in place of videos to estimate the abundance of freshwater fishes and assess their habitat use and behaviour in clear headwater streams. This work also demonstrated how action cameras could be used to evaluate the effect of the introduction of artificial habitat as a restoration measure for headwater fish communities

Induced polyploidy as a tool for the development of novel South African indigenous crops.

Doctor of Philosophy in Agriculture (Horticultural Science)Polyploidy is a naturally-occurring phenomenon in plants and has been reported as an important pathway for evolution and speciation; it is estimated that a large percentage of flowering plants are polyploid in origin. Although the first plant polyploid was discovered over a century ago, the genetic and evolutionary implications of polyploidy have not been fully elucidated. On a more practical level, there are many opportunities for utilizing induced polyploidy as a valuable tool in traditional plant breeding programmes. South Africa has the highest recorded plant species density in the world, however, many of these species have only marginal potential due to size and other constraints. Induced polyploids may be expected to exhibit one, or more, of the following characteristics resulting in the improvement or the development of new economically important plants: larger tuber, rhizome or root size; increased flower or fruit size; enhanced flower colour intensity, improved drought tolerance, increased bio-mass; improved photosynthetic capacity; larger and/or thicker leaves; dwarfism; increased secondary metabolite production, e.g. medicinal compounds. Several plant species (Crocosmia aurea, Tetradenia riparia, Siphonochilus aethiopicus and Plectranthus esculentus) were selected for the induction of polyploidy and various horticultural characteristics evaluated. Methods for the successful induction of polyploidy were developed for all selected species. By evaluating various horticultural characteristics of the induced polyploids it was determined that flower size, plant vigour and nematode resistance, as well as essential oil content and bioactivity could be significantly improved in all tested species. Induced polyploidy could, therefore, have a significant impact on the development of economically-viable novel crops indigenous to southern Africa

Development of micropropagation protocols for selected indigenous plant species..

Thesis (M.Sc.)-University of Natal, 1995.The herbal medicine trade is thriving in KwaZulu Natal with an ever-increasing number of people harvesting and trading in indigenous plants, especially those species with medicinal and/or magical properties. The number of plants harvested has increased whereas the size of the plants collected has decreased, resulting in low recruitment into wild populations. As a result of these two factors, species diversity has decreased. To this end, the aim of these investigations was to establish micropropagation protocols for the selected species i.e. Bowiea volubilis, Haworthia_ limifolia and Cryptocarya latifolia. In addition, hardening-off protocols were also developed. The bulbous plant, Bowiea volubilis, was propagated via organogenesis using the inflorescence stem. Bulblet formation occurred directly without an intervening callus phase. Bulblets were produced on explants on Linsmaier and Skoog (1965) (LS) medium containing 30 g.r' sucrose and either I mg.r' BAP and I mg.r' 2,4-D or 1 mg.r' BAP and 1 mg.r' NAA. Shoots and roots were induced upon transfer to the basal medium devoid of plant growth regulators. Regenerated plantlets were successfully hardened-off. Haworthia limifolia, a succulent, was propagated via direct somatic embryogenesis using leaf material. Embryo formation was induced on a modified Murashige and Skoog (1962) (MS) medium containing 20 g.r' sucrose and 1 - 5 mg.r' 2,4-D. secondary embryogenesis occurred when the explants were transferred to the basal medium supplemented with activated charcoal and devoid of growth hormones. Healthy plantlets, produced from secondary embryos, were transferred to pots and acclimatised to greenhouse conditions. A large proportion of the plantlets regenerated were vitrified and as a result, this problem was addressed by changing the medium composition or culture environment. Silica gel, when placed in the culture vessel, was the best treatment for reversal of the vitrified condition. The establishment of leaf and nodal segment cultures of Cryptocarya latifolia required extensive investigation of sterilants to reduce fungal contamination. Several fungicides were tested and a successful sterilisation protocol was established. A number of media were tested for the induction of dormant axillary buds and multiplication of shoots. The best medium for both bud induction and proliferation was MS medium containing 30 g.r1 sucrose and 1 mg.r1 BAP and 0.01 mg.r1 NAA. Callus cultures were established on MS medium containing 30 g.r1 sucrose and 3 mg.rl 2,4-D. These calli, however, were non-embryogenic. Application of the established protocols and future research strategies are discussed

Alterations in juvenile diploid and triploid African catfish skin gelatin yield and amino acid composition: effects of chlorpyrifos and butachlor exposures

Skin is a major by-product of the fisheries and aquaculture industries and is a valuable source of gelatin. This study examined the effect of triploidization on gelatin yield and proximate composition of the skin of African catfish (Clarias gariepinus). We further investigated the effects of two commonly used pesticides , chlorpyrifos (CPF) and butachlor (BUC), on the skin gelatin yield and amino acid composition in juvenile full-sibling diploid and triploid African catfish. In two separate experiments, diploid and triploid C. gariepinus were exposed for 21 days to graded CPF [mean measured: 10, 16, or 31 mg/L] or BUC concentrations [Mean measured: 22, 44, or 60 mg/L]. No differences in skin gelatin yield, amino acid or proximate compositions were observed between diploid and triploid control groups. None of the pesticide treatments affected the measured parameters in diploid fish. In triploids, however, gelatin yield was affected by CPF treatments while amino acid composition remained unchanged. Butachlor treatments did not alter any of the measured variables in triploid fish. To our knowledge, this study is the first to investigate changes in the skin gelatin yield and amino acid composition in any animal as a response to polyploidization and/or contaminant exposure

Ordered molecular layers and the influence of elevated temperature on their respective vibrational spectra

In der vorliegenden Dissertation wurde das temperaturabhängige Strukturverhalten organischer Monoschichten untersucht. Dafür wurden verschieden präparierte Monoschichten erhitzt und mittels Summenfrequenzspektroskopie analysiert. Die dabei gewonnenen Schwingungsspektren gaben Hinweise auf die bei verschiedenen Temperaturen auftretenden Veränderungen der Monoschicht und auf die jeweiligen Konformationsänderungsenthalpien. Weiterhin wurden erste Experimente durchgeführt um diese Veränderungen zeitaufgelöst aufnehmen zu können.Within the scope of the presented thesis, the structural behavior of organic monolayers has been studied. For that reason, different monolayers were prepared and heated. The structural changes that occurred during the heating process were and analyzed via sum-frequency generation spectroscopy. The generated spectra can be utilized to grant insights regarding the enthalpy for conformational changes. Furthermore, first experiments for an in-time observation of these changes were successfully executed

Habitat utilisation of Pseudobarbus afer and Sandelia capensis in headwaters of the Swartkops River, Eastern Cape, South Africa

Habitat degradation is one of the greatest threats to endemic freshwater fish in the Cape Fold Ecoregion. One habitat restoration strategy is the replication of critical habitat using artificial materials. In this paper, we evaluate the habitat occupancy of two small, endemic headwater fish of the Cape Fold Ecoregion, namely the Eastern Cape redfinPseudobarbus afer(Peters, 1864) and the Cape KurperSandelia capensis(Cuvier, 1829). Habitat occupancy was observed in five pool microhabitats (inflow, woody debris, deep open, fern-root wads, and outflow) using action cameras. Changes in habitat occupancy were assessed following the introduction of an artificial habitat in the form of PVC pipes.Pseudobarbus aferpreferred deeper open habitats, whereasSandelia capensispreferred more structured woody debris habitat. Habitat occupancies differed significantly across all microhabitats for both species; excluding those between the inflow and outflow, and the open deep and fern-root wads forSandelia capensis. Pseudobarbus aferandS. capensisoccupancies in the natural microhabitats reduced significantly following the introduction of the artificial habitat. For species restricted to degraded habitats that require habitat restoration, the use of artificial habitat may be beneficial in accelerating the recovery of such species

VulPro: an overview of Africa’s vulture conservation centre.

No Abstract

Using action cameras to estimate the abundance and habitat use of threatened fish in clear headwater streams:

Snorkel and electrofishing surveys are the traditional baseline methods for fish surveys in clear headwater streams. However, action cameras provide a non-harmful alternative to monitor freshwater fish populations to develop informed conservation management initiatives. In this paper, estimates from photographs and videos from action cameras are compared with snorkel survey estimates of the density of a threatened endemic minnow species in a headwater stream, Eastern Cape, South Africa. Photograph-based relative abundances of fish summed over five microhabitats in each pool returned equivalent results to snorkel surveys, whereas the equivalent video-based abundance estimates were approximately 50% greater than the snorkel estimates. Therefore, photograph-derived estimates could be used as an alternative to snorkel surveys for fish population monitoring and habitat use studies in clear headwater streams