Middle Jurassic terrestrial environmental and floral changes linked to volcanism: Evidence from the Qinghai Tibet Plateau, China

The breakup of Pangaea and the rapid opening of the Ligurian and Central Atlantic oceans during the Middle Jurassic resulted in widespread volcanism accompanied by significant shifts in global environments, climates, and floras. Although major volcanism is a plausible driver of such global changes, linking these phenomena in the Middle Jurassic is hindered by a lack of detailed sedimentary records from which to evaluate cause and effect. Here, we link Middle Jurassic environmental, climatic, and floral changes with volcanism using records from the Dameigou section of the Qaidam Basin on the Qinghai-Tibet Plateau. High-resolution chemostratigraphic (δ13Corg patterns) and biostratigraphic (palynological fossils) data reveal three negative organic carbon isotope excursions (NCIE) at the Aalenian-Bajocian boundary, the Bajocian-Bathonian boundary, and in the middle of the Callovian, respectively. The first two NCIEs (NCIE-I and NCIE-II) were accompanied by relatively warm and humid climatic conditions and coal accumulation. In contrast, the third NCIE (NCIE-III) was accompanied by warm but dry climatic conditions, a decrease in coal accumulation, a decline in plant diversity, the significant decline in fern spore diversity and abundance, and a rapid increase in the abundance of Classopollis pollen (based on petrological, palynological, PCA, Hydrophyte/Xerophyte ratio, and nMDS data). Four sedimentary mercury anomalies (Hg/Al spikes) have temporal coincidence with the three NCIEs and climate warming events, suggesting a volcanic origin for these. We suggest that volcanism was a key driver of Middle Jurassic change, with major pulses releasing large amounts of CO2 and Hg into the atmosphere, resulting in Hg loading, NCIEs, climatic warming, and floral changes in terrestrial strata. Our multi-proxy study provides new insights into the links between volcanism and terrestrial environmental, climatic, and floral changes during the Middle Jurassic

Gigantopteris Schenk ex Yabe in the Capitanian–Wuchiapingian (middle-late Permian) flora of central Shanxi in North China:palaeobiogeographical and palaeoecological implications

The concept of the Cathaysian Flora was originally based on fossils from the Permian of central Shanxi Province in North China but is now recognized to be valid for the flora of much of East Asia during the Carboniferous and Permian periods. Although Gigantopteris Schenck ex Yabe is characteristic and often distinctive of the Cathaysian Flora in general, it has previously not been recorded in Shanxi Province within the central part of the North China. Recent investigations on the Capitanian-Wuchiapingian (middle-late Permian) flora of the Taiyuan East Hill Coalfield in Shanxi have yielded well-preserved specimens of Gigantopteris dictyophylloides Gu and Zhi within the Upper Shihhotse Formation, contained within continental red-beds interpreted as representing a floodplain environment. Discovery of G. dictyophylloides extends the palaeogeographic distribution of the genus and shows that the Permian flora of Shanxi is more typical of the Cathaysian Flora than previously thought. Results also provide new information on the ecology of G. dictyophylloides based on assessments of its occurrence within depositional sedimentary fades from which we conclude that this species thrived in alluvial-fluvial sediments on the North China Block. We also conclude that the red beds of the Upper Shihhotse Formation that yield gigantopterids most likely formed under a seasonally dry climate rather than a vague statement that these red beds were formed generally under arid conditions as previously thought. (C) 2015 Elsevier Ltd. All rights reserved

Four volcanically driven climatic perturbations led to enhanced continental weathering during the Late Triassic Carnian Pluvial Episode

The arid climate of the Late Triassic was interrupted by a particularly humid episode known as the Carnian Pluvial Episode (CPE; ca. 234–232 million years ago). The CPE is often linked to eruptions in the Wrangellia Large Igneous Province (LIP), and is assumed to have led to global warming, enhanced weathering, water deoxygenation, and biotic changes. However, direct evidence for a temporal link between volcanic activity and chemical weathering has not yet been established due to the lack of comprehensive records across the CPE. In this study, geochemical and mineralogical analyses are applied to a lacustrine stratigraphic succession of the Jiyuan Basin (North China) that captures the CPE in high resolution. We identify four distinct pulses of enhanced continental chemical weathering characterized by elevated Chemical Index of Alteration values and kaolinite contents. These peaks in continental weathering coincide with Hg/TOC enrichments and negative organic carbon isotope excursions that mark four short (~400 kyr) but intense pulses of Wrangellia LIP volcanism. In combination with signs of increased humidity, our findings provide direct and independent evidence that Wrangellia LIP eruptions significantly altered CPE chemical weathering rates in response to global warming and wetting. The lake experienced eutrophication and water deoxygenation after each volcanic pulse but the swift recovery of carbon isotopes suggests that the system rapidly returned to conditions prior to the volcanic perturbation. Organic carbon burial facilitated by widespread dysoxic and anoxic waters, and CO2 consumption via enhanced weathering likely played crucial roles in the rapid climatic recovery after each volcanic pulse

Heterocellular induction of interferon by negative-sense RNA viruses

The infection of cells by RNA viruses is associated with the recognition of virus PAMPs (pathogen-associated molecular patterns) and the production of type I interferon (IFN). To counter this, most, if not all, RNA viruses encode antagonists of the IFN system. Here we present data on the dynamics of IFN production and response during developing infections by paramyxoviruses, influenza A virus and bunyamwera virus. We show that only a limited number of infected cells are responsible for the production of IFN, and that this heterocellular production is a feature of the infecting virus as opposed to an intrinsic property of the cells

Glioblastoma multiforme with oligodendroglial component (GBMO): favorable outcome after post-operative radiotherapy and chemotherapy with nimustine (ACNU) and teniposide (VM26)

BACKGROUND: The presence of an oligodendroglial component within a glioblastoma multiforme (GBM) is considered a prognostically favorable factor, but the clinical outcome of patients with glioblastoma multiforme with oligodendroglial component (GBMO) after combined post-operative radiotherapy and chemotherapy has rarely been reported. METHODS: We analyzed overall and progression-free survival in a group of ten consecutive patients initially diagnosed with GBMO between 1996 and 2004 (4.2% of all GBM patients). Median (range) age was 54 (34–73) years, 90% were resected and median radiotherapy dose was 54 (45–60.6) Gy. 80% of patients received post-operative chemotherapy with nimustine (ACNU) and VM26 (teniposide) for a median of 3.5 (1–6) cycles, the remainder were treated with post-operative radiotherapy alone. All specimens were reviewed by an experienced neuropathologist. RESULTS: Neuropathological re-evaluation revealed GBM with an oligodendroglial component of 30% or less in five cases, predominant oligoastrocytic tumors with focal areas of GBM in four patients and WHO grade III oligoastrocytoma with questionable transition to GBM in one patient. Four of ten patients were alive at at 40, 41, 41 and 82 months. The median overall survival (Kaplan-Meier) was 26 months, the 2-year survival rate was 60% (progression-free survival: 9.8 months and 40%, respectively). CONCLUSION: In conclusion, patients with GBMO treated with post-operative radiotherapy and chemotherapy with ACNU/VM26 had a better prognosis than reported for GBM in modern chemoradiation series

Resurrection of DNA Function In Vivo from an Extinct Genome

There is a burgeoning repository of information available from ancient DNA that can be used to understand how genomes have evolved and to determine the genetic features that defined a particular species. To assess the functional consequences of changes to a genome, a variety of methods are needed to examine extinct DNA function. We isolated a transcriptional enhancer element from the genome of an extinct marsupial, the Tasmanian tiger (Thylacinus cynocephalus or thylacine), obtained from 100 year-old ethanol-fixed tissues from museum collections. We then examined the function of the enhancer in vivo. Using a transgenic approach, it was possible to resurrect DNA function in transgenic mice. The results demonstrate that the thylacine Col2A1 enhancer directed chondrocyte-specific expression in this extinct mammalian species in the same way as its orthologue does in mice. While other studies have examined extinct coding DNA function in vitro, this is the first example of the restoration of extinct non-coding DNA and examination of its function in vivo. Our method using transgenesis can be used to explore the function of regulatory and protein-coding sequences obtained from any extinct species in an in vivo model system, providing important insights into gene evolution and diversity

Forming a three-dimensional porous organic network via solid-state explosion of organic single crystals

Solid-state reaction of organic molecules holds a considerable advantage over liquid-phase processes in the manufacturing industry. However, the research progress in exploring this benefit is largely staggering, which leaves few liquid-phase systems to work with. Here, we show a synthetic protocol for the formation of a three-dimensional porous organic network via solid-state explosion of organic single crystals. The explosive reaction is realized by the Bergman reaction (cycloaromatization) of three enediyne groups on 2,3,6,7,14,15-hexaethynyl-9,10-dihydro-9,10-[1,2]benzenoanthracene. The origin of the explosion is systematically studied using single-crystal X-ray diffraction and differential scanning calorimetry, along with high-speed camera and density functional theory calculations. The results suggest that the solid-state explosion is triggered by an abrupt change in lattice energy induced by release of primer molecules in the 2,3,6,7,14,15-hexaethynyl-9,10-dihydro-9,10-[1,2]benzenoanthracene crystal lattice

Modular cell-based platform for high throughput identification of compounds that inhibit a viral interferon antagonist of choice

The work was supported by the Medical Research Council, U.K. (University of St Andrews Doctoral Training Grant to AV and CSA), Deutsche Forschungsgemeinschaft (PA 815/2-1) to CP, Tenovus Scotland (T15/38) to MN and Wellcome Trust to CP, MN (ISSF) and RER (101788/Z/13/Z)Viral interferon (IFN) antagonists are a diverse class of viral proteins that counteract the host IFN response, which is important for controlling viral infections. Viral IFN antagonists are often multifunctional proteins that perform vital roles in virus replication beyond IFN antagonism. The critical importance of viral IFN antagonists is highlighted by the fact that almost all viruses encode one of these proteins. Inhibition of viral IFN antagonists has the potential to exert pleiotropic antiviral effects and thus this important protein class represents a diverse plethora of novel therapeutic targets. To exploit this, we have successfully developed and executed a novel modular cell-based platform that facilitates the safe and rapid screening for inhibitors of a viral IFN antagonist of choice. The platform is based on two reporter cell-lines that provide a simple method to detect activation of IFN induction or signaling via an eGFP gene placed under the control of the IFNβ or an ISRE-containing promoter, respectively. Expression of a target IFN antagonist in the appropriate reporter cell-line will block the IFN response and hence eGFP expression. We hypothesized that addition of a compound that inhibits IFN antagonist function will release the block imposed on the IFN response and hence restore eGFP expression, providing a measurable parameter for high throughput screening (HTS). We demonstrate assay proof-of-concept by (i) exploiting hepatitis C virus (HCV) protease inhibitors to inhibit NS3-4A's capacity to block IFN induction and (ii) successfully executing two HTS targeting viral IFN antagonists that block IFN signaling; NS2 and IE1 from human respiratory syncytial virus (RSV) and cytomegalovirus (CMV) respectively, two clinically important viruses for which vaccine development has thus far been unsuccessful and new antivirals are required. Both screens performed robustly and Z′ Factor scores of >0.6 were achieved. We identified (i) four hit compounds that specifically inhibit RSV NS2's ability to block IFN signaling by mediating STAT2 degradation and exhibit modest antiviral activity and (ii) two hit compounds that interfere with IE1 transcription and significantly impair CMV replication. Overall, we demonstrate assay proof-of-concept as we target viral IFN antagonists from unrelated viruses and demonstrate its suitability for HTS.Publisher PDFPeer reviewe

Effects of coagulation on the two-phase peristaltic pumping of magnetized Prandtl biofluid through an endoscopic annular geometry containing a porous medium

In this article, motivated by more accurate simulation of electromagnetic blood flow in annular vessel geometries in intravascular thrombosis, a mathematical model is developed for elucidating the effects of coagulation (i.e. a blood clot) on peristaltically induced motion of an electrically-conducting (magnetized) Prandtl fluid physiological suspension through a non-uniform annulus containing a homogenous porous medium. Magnetohydrodynamics is included owing to the presence of iron in the hemoglobin molecule and also the presence of ions in real blood. Hall current which generates a secondary (cross) flow at stronger magnetic field is also considered in the present study. A small annular tube (endoscopic) with sinusoidal peristaltic waves traveling along the inner and outer walls at constant velocity with a clot present is analyzed. The governing conservation equations which comprise the continuity and momentum equations for the fluid phase and particle phase are simplified under lubrication approximations (long wavelength and creeping flow conditions). The moving boundary value problem is normalized and solved analytically (with appropriate wall conditions) for the fluid phase and particle phase using the homotopy perturbation method (HPM) with MATHEMATICA software. Validation is conducted with MAPLE numerical quadrature. A parametric study of the influence of clot height (δ), particle volume fraction (C), Prandtl fluid material parameters (α, β), Hartmann number (M), Hall parameter (m), permeability parameter (k), peristaltic wave amplitude (φ) and wave number (δ̅ ) on pressure difference and wall shear (friction forces) is included. Pressure rise is elevated with clot height, medium permeability and Prandtl rheological material parameters whereas it is reduced with increasing particle volume fraction and magnetic Hartmann number. Friction forces on the outer and inner tubes of the endoscope annulus are enhanced with clot height and particle volume fraction whereas they are decreased with Prandtl rheological material parameters, Hall parameter and permeability parameter. The simulations provide a good benchmark for more general computational fluid dynamics studies of magnetic endoscopic multi-phase peristaltic pumping