Triassic palynostratigraphy and palynofloral provinces: evidence from southern Xizang (Tibet), China

Palynological analysis was carried out on Middle to Upper Triassic strata from Tulong, Nyalam County, southern Xizang (Tibet), China. Well-preserved miospore (pollen and spore) assemblages and sparse acritarch occurrences were identified. We recognized four formal and one informal biozones based on stratigraphically important taxa and compositional changes through the succession, in ascending order: the Triplexisporites Interval Zone (Anisian), the Staurosaccites quadrifidus Taxon-range Zone (upper Anisian to lower Norian), the Striatella Interval Zone (lower Norian), the Craterisporites rotundus Taxon-range Zone (middle to upper Norian) and the informal ‘Dictyophyllidites harrisii zone’ (Rhaetian). The zonation was supported by marine fossils (e.g., ammonoids and conodonts), and compositional similarity between the zones was examined using non-metric multidimensional scaling (NMDS). Correlation with other representative palynological sequences across Gondwana was also conducted. The presence of miospore taxa not previously recovered from the Late Triassic North and South China palynofloral provinces (e.g., Ashmoripollis reducta, Craterisporites rotundus, Enzonalasporites vigens, Minutosaccus crenulatus, Samaropollenites speciosus and Staurosaccites quadrifidus) calls for a new province in southwestern China, i.e., the Southern Xizang Province. It is proposed here that the modern expression of the northern boundary runs along the Yarlung Zangbo Suture, the remnant of the Tethys that separated the Indian Plate (southern Xizang) and the Lhasa Block during the Late Triassic. This new palynofloral province comprises typical elements of the Onslow Microflora, indicating the need for an extension of this microflora in southern Xizang, China.This work was made possible by the support of the Strategic Priority Research Program (B) of the Chinese Academy of Sciences (XDB03010103), UNESCO grant IGCP 632, the Swedish Research Council, grant VR 2015-04264 and the China Scholarship Council (201504910609).</p

The architecture of Permian glossopterid ovuliferous reproductive organs

A historical account of research on glossopterid ovuliferous reproductive structures reveals starkly contrasting interpretations of their architecture and homologies from the earliest investigations. The diversity of interpretations has led to the establishment of a multitude of genera for these fossil organs, many of the taxa being synonymous. We identify a need for taxonomic revision of these genera to clearly demarcate taxa before they can be used effectively as palaeobiogeographic or biostratigraphic indices. Our assessment of fructification features based on extensive studies of adpression and permineralized fossils reveals that many of the character states for glossopterids used in previous phylogenetic analyses are erroneous. We interpret glossopterid fertiligers to have been borne in loose strobili in which individual polysperms represent fertile cladodes of diverse morphologies subtended by a vegetative leaf or bract. Polysperms within the group are variously branched or condensed with ovule placement ranging from marginal to abaxial, in some cases occurring on recurved branchlets or in cupule-like structures. Glossopterid polysperms of all types are fringed by one or two ranks of wing-like structures that may represent the remnants of megasporophylls that were, ancestrally, developed on the fertile axillary shoot. Glossopterid fertiligers have similarities to the condensed bract/ovuliferous scale complexes of conifer cones, but comparisons with Mesozoic seed-ferns are hindered by insufficient data on the arrangement and homologies of the ovulebearing organs of the latter group. Nevertheless, glossopterid polysperms differ from the ovuliferous organs of Mesozoic seed-ferns by longitudinal versus transverse folding, respectively.Also funded by the National Science Foundation [project #1636625]; University of the Witwatersrand; Rhodes University; the DST-NRF Centre of Excellence in Palaeosciences and the NRF African Origins Platform [UID: 98822]</p

Discovery of Entry Inhibitors for HIV-1 via a New De Novo Protein Design Framework

A new (to our knowledge) de novo design framework with a ranking metric based on approximate binding affinity calculations is introduced and applied to the discovery of what we believe are novel HIV-1 entry inhibitors. The framework consists of two stages: a sequence selection stage and a validation stage. The sequence selection stage produces a rank-ordered list of amino-acid sequences by solving an integer programming sequence selection model. The validation stage consists of fold specificity and approximate binding affinity calculations. The designed peptidic inhibitors are 12-amino-acids-long and target the hydrophobic core of gp41. A number of the best-predicted sequences were synthesized and their inhibition of HIV-1 was tested in cell culture. All peptides examined showed inhibitory activity when compared with no drug present, and the novel peptide sequences outperformed the native template sequence used for the design. The best sequence showed micromolar inhibition, which is a 3–15-fold improvement over the native sequence, depending on the donor. In addition, the best sequence equally inhibited wild-type and Enfuvirtide-resistant virus strains