Brushing dimensions--a dual visual analysis model for high-dimensional data

In many application fields, data analysts have to deal with datasets that contain many expressions per item. The effective analysis of such multivariate datasets is dependent on the user's ability to understand both the intrinsic dimensionality of the dataset as well as the distribution of the dependent values with respect to the dimensions. In this paper, we propose a visualization model that enables the joint interactive visual analysis of multivariate datasets with respect to their dimensions as well as with respect to the actual data values. We describe a dual setting of visualization and interaction in items space and in dimensions space. The visualization of items is linked to the visualization of dimensions with brushing and focus+context visualization. With this approach, the user is able to jointly study the structure of the dimensions space as well as the distribution of data items with respect to the dimensions. Even though the proposed visualization model is general, we demonstrate its application in the context of a DNA microarray data analysis

Characterizing Cancer Subtypes Using Dual Analysis in Caleydo StratomeX

Dual analysis uses statistics to describe both the dimensions and rows of a high-dimensional dataset. Researchers have integrated it into StratomeX, a Caleydo view for cancer subtype analysis. In addition, significant-difference plots show the elements of a candidate subtype that differ significantly from other subtypes, thus letting analysts characterize subtypes. Analysts can also investigate how data samples relate to their assigned subtype and other groups. This approach lets them create well-defined subtypes based on statistical properties. Three case studies demonstrate the approach's utility, showing how it reproduced findings from a published subtype characterization

Visual Analytics of Event Data using Multiple Mining Methods

Most researchers use a single method of mining to analyze event data. This paper uses case studies from two very differentdomains (electronic health records and cybersecurity) to investigate how researchers can gain breakthrough insights by com-bining multiple event mining methods in a visual analytics workflow. The aim of the health case study was to identify patternsof missing values, which was daunting because the 615 million missing values occurred in 43,219 combinations of fields. How-ever, a workflow that involved exclusive set intersections (ESI), frequent itemset mining (FIM) and then two more ESI stepsallowed us to identify that 82% of the missing values were from just 244 combinations. The cybersecurity case study’s aim wasto understand users’ behavior from logs that contained 300 types of action, gathered from 15,000 sessions and 1,400 users.Sequential frequent pattern mining (SFPM) and ESI highlighted some patterns in common, and others that were not. For thelatter, SFPM stood out for its ability to action sequences that were buried within otherwise different sessions, and ESI detectedsubtle signals that were missed by SFPM. In summary, this paper demonstrates the importance of using multiple perspectives,complementary set mining methods and a diverse workflow when using visual analytics to analyze complex event data

Integrating cluster formation and cluster evaluation in interactive visual analysis

Cluster analysis is a popular method for data investigation where data items are structured into groups called clusters. This analysis involves two sequential steps, namely cluster formation and cluster evaluation. In this paper, we propose the tight integration of cluster formation and cluster evaluation in interactive visual analysis in order to overcome the challenges that relate to the black-box nature of clustering algorithms. We present our conceptual framework in the form of an interactive visual environment. In this realization of our framework, we build upon general concepts such as cluster comparison, clustering tendency, cluster stability and cluster coherence. Additionally, we showcase our framework on the cluster analysis of mixed lipid bilayers

Attribute Signatures: Dynamic Visual Summaries for Analyzing Multivariate Geographical Data

The visual analysis of geographically referenced datasets with a large number of attributes is challenging due to the fact that the characteristics of the attributes are highly dependent upon the locations at which they are focussed, and the scale and time at which they are measured. Specialized interactive visual methods are required to help analysts in understanding the characteristics of the attributes when these multiple aspects are considered concurrently. Here, we develop attribute signatures -- interactively crafted graphics that show the geographic variability of statistics of attributes through which the extent of dependency between the attributes and geography can be visually explored. We compute a number of statistical measures, which can also account for variations in time and scale, and use them as a basis for our visualizations. We then employ different graphical configurations to show and compare both continuous and discrete variation of location and scale. Our methods allow variation in multiple statistical summaries of multiple attributes to be considered concurrently and geographically, as evidenced by examples in which the census geography of London and the wider UK are explored

Degradation of Toxic Indigo Carmine Dye by Electrosynthesized Ferrate (VI)

Response surface methodology was applied for optimizing indigo carmine (IC) dye removal by electrochemically produced ferrate (VI). Box-Behnken design was employed in this study, and design parameters were pH, Fe (VI) dose and initial dye concentration (Co). R2 and adjusted R2 values were very high that indicated very good accuracy for the employed model. Optimum operational conditions were: 4.08-7.69 for pH, 24-118.83 mg/L for Fe (VI) dose and 60.68-99.13 mg/L for complete removal of IC. Produced by electrochemical method Ferrate (VI) provides high effectiveness for IC dye-containing synthetic wastewater

Interactive Generation of Visual Summaries for Multivariate Geographical Data Analysis

The visual analysis of geographically referenced datasets with a large number of attributes is challenging due to the fact that the characteristics of the attributes are highly dependent upon the locations at which they are focussed and the scale at which they are measured. Here, we develop attribute signatures – interactively crafted graphics that show the geographic variability of statistics of attributes through which the extent of dependency between the attributes and geography can be visually explored. We compute a number of statistical measures and use them as a basis for our visualizations. Our methods allow variation in multiple statistical summaries of multiple attributes to be considered concurrently and geographically, as evidenced by an example in which the census geography of two cities in UK are explored

Dual analysis of DNA microarrays

Microarray data represents the expression levels of genes for different samples and for different conditions. It has been a central topic in bioinformatics research for a long time already. Researchers try to discover groups of genes that are responsible for specific biological processes. Statistical analysis tools and visualizations have been widely used in the analysis of microarray data. Researchers try to build hypotheses on both the genes and the samples. Therefore,such analyses require the joint exploration of the genes and the samples. However, current methods in interactive visual analysis fail to provide the necessary mechanisms for this joint analysis. In this paper, we propose an interactive visual analysis framework that enables the dual analysis of the samples and the genes through the use of integrated statistical tools. We introduce a set of specialized views and a detailed analysis procedure to describe the utilization of our framework