Microsatellite analysis of traditional eastern grapevine varieties and wild accessions from Geisenheim collection in Germany

The Geisenheim collection contains a number of old traditional grapevines obtained during the last century from many countries including wild grapevine accessions. Over 60 samples originating from Azerbaijan, Bulgaria, Dagestan, Egypt, Greece, Hungary, Kazakhstan, Lebanon, Moldova, Romania, Russia, Turkey, Ukraine and Uzbekistan were probed for analysis. Additionally 25 accessions of wild grapevines some acquired in Germany were included to the tested panel. Accessions were analysed on 9 microsatellite loci (VVS2, VVMD5, VVMD7, VVMD25, VVMD27, VVMD28, VVMD32, VrZAG62 and VrZAG79) for standard grapevine identification done in 4 multiplex PCRs. We obtained 13.56 overall average alleles per locus (12.44 in cultivated and 7.56 in wild grapevines). Expected and observed heterozygosity in cultivated grapevines were 0.826 and 0.644, while among wild accessions it was 0.693 and 0.464 respectively. The most informative locus proved to be VVMD28 in Vitis vinifera L. ssp. sativa and VVMD7 within V. vinifera L. ssp. sylvestris GMELIN. Microsatellite profiling will enable proper identification of cultivars by obtaining groups of synonyms and homonyms through comparative analysis as well assessment future estimation of relatedness between cultivated and wild accessions

An acoustic postconflict display in the duetting tropical boubou (Laniarius aethiopicus): a signal of victory?

BACKGROUND: In many species of birds, pair bonded males and females precisely co-ordinate their vocalisations to form duets. Duetting behaviour, although still somewhat of an enigma, is thought to function primarily in territorial defence and mate guarding. We identify an additional function of duetting in an afrotropical bird, the tropical boubou (Laniarius aethiopicus), that uses one duet type as a postconflict display probably to advertise victory to other boubous. RESULTS: We simulated intrusions into boubou territories in the field in Ivory Coast, West Africa using playbacks of four different types of boubou duets to test the use of the presumptive acoustic victory display before, during and after playbacks. These staged encounters resulted in either retreat of the focal birds during playback or continued presence accompanied by vocal displays after playback had ceased. Losers of encounters never sung after retreating whereas 11 out of 18 pairs sung the presumptive victory duet after the encounter. Analysis revealed that the presumptive victory display was sung significantly more often after than before or during the playback treatment. CONCLUSION: We conclude that, most likely, the investigated duet type is a postconflict victory display – a novel function of duets. Furthermore the duet is a rare example among birds of a context-specific song. The conspicuousness of the display suggests that it is directed not only to losers of an agonistic encounter but also to other pairs of birds in neighbouring territories

Genome Power for Rye

Posteri201

VPLanet: The Virtual Planet Simulator

We describe a software package called VPLanet that simulates fundamental aspects of planetary system evolution over Gyr timescales, with a focus on investigating habitable worlds. In this initial release, eleven physics modules are included that model internal, atmospheric, rotational, orbital, stellar, and galactic processes. Many of these modules can be coupled simultaneously to simulate the evolution of terrestrial planets, gaseous planets, and stars. The code is validated by reproducing a selection of observations and past results. VPLanet is written in C and designed so that the user can choose the physics modules to apply to an individual object at runtime without recompiling, i.e., a single executable can simulate the diverse phenomena that are relevant to a wide range of planetary and stellar systems. This feature is enabled by matrices and vectors of function pointers that are dynamically allocated and populated based on user input. The speed and modularity of VPLanet enables large parameter sweeps and the versatility to add/remove physical phenomena to assess their importance. VPLanet is publicly available from a repository that contains extensive documentation, numerous examples, Python scripts for plotting and data management, and infrastructure for community input and future development.Comment: 75 pages, 34 figures, 10 tables, accepted to the Proceedings of the Astronomical Society of the Pacific. Source code, documentation, and examples available at https://github.com/VirtualPlanetaryLaboratory/vplane

100 Years of Earth System Model Development

This is the final version. Available from American Meteorological Society via the DOI in this recordToday’s global Earth System Models began as simple regional models of tropospheric weather systems. Over the past century, the physical realism of the models has steadily increased, while the scope of the models has broadened to include the global troposphere and stratosphere, the ocean, the vegetated land surface, and terrestrial ice sheets. This chapter gives an approximately chronological account of the many and profound conceptual and technological advances that made today’s models possible. For brevity, we omit any discussion of the roles of chemistry and biogeochemistry, and terrestrial ice sheets

Global warming: is weight loss a solution?

The current climate change has been most likely caused by the increased greenhouse gas emissions. We have looked at the major greenhouse gas, carbon dioxide (CO2), and estimated the reduction in the CO2 emissions that would occur with the theoretical global weight loss. The calculations were based on our previous weight loss study, investigating the effects of a low-carbohydrate diet on body weight, body composition and resting metabolic rate of obese volunteers with type 2 diabetes. At 6 months we observed decreases in weight, fat mass, fat free mass and CO2 production. We estimated that a 10 kg weight loss of all obese and overweight people would result in a decrease of 49.560 Mt of CO2 per year, which would equal to 0.2 % of the CO2 emitted globally in 2007. This reduction could help meet the CO2 emission reduction targets and unquestionably would be of a great benefit to the global health

A mathematical framework for analysis of water tracers: Part 1: Development of theory and application to the preindustrial mean state

A new matrix operator framework is developed to analyze results from climate modeling studies that employ numerical water tracers (WTs), which track the movement of water in the aerial hydrological cycle from evaporation to precipitation. Model WT output is related to the fundamental equation of hydrology, and the moisture flux divergence is subdivided into the divergence of locally evaporated moisture and the convergence of remotely evaporated moisture. The formulation also separates locally and remotely sourced precipitation. The remote contribution (also the remote moisture convergence) may be further subdivided into zonal, meridional, intrabasin, and interbasin parts. This framework is applied to the preindustrial climate as simulated by a global climate model in which water has been tagged in 10° latitude bands in each of the major ocean basins, and in which each major land mass has been tagged separately. New insights from the method reveal fundamental differences between the major ocean basins in locally sourced precipitation, remotely sourced precipitation, and their relative partitioning. Per unit area, the subtropical Atlantic is the largest global moisture source, providing precipitable water to adjacent land areas and to the eastern Pacific tropics while retaining the least for in situ precipitation. Subtropical moisture is least divergent over the Pacific, which is the smallest moisture source (per unit area) for global land areas. Basins also differ in how subtropical moisture is partitioned between tropical, midlatitude, and land regions. Part II will apply this framework to hydrological cycle perturbations due to CO₂ doubling.Keywords: linear algebra, numerical water tracers, hydrologic cycle, big data analysis, matrix operatorKeywords: linear algebra, numerical water tracers, hydrologic cycle, big data analysis, matrix operato