Genome-wide deficiency screen for the genomic regions responsible for heat resistance in Drosophila melanogaster

Background: Temperature adaptation is one of the most important determinants of distribution and population size of organisms in nature. Recently, quantitative trait loci (QTL) mapping and gene expression profiling approaches have been used for detecting candidate genes for heat resistance. However, the resolution of QTL mapping is not high enough to examine the individual effects of various genes in each QTL. Heat stress-responsive genes, characterized by gene expression profiling studies, are not necessarily responsible for heat resistance. Some of these genes may be regulated in association with the heat stress response of other genes. Results: To evaluate which heat-responsive genes are potential candidates for heat resistance with higher resolution than previous QTL mapping studies, we performed genome-wide deficiency screen for QTL for heat resistance. We screened 439 isogenic deficiency strains from the DrosDel project, covering 65.6% of the Drosophila melanogaster genome in order to map QTL for thermal resistance. As a result, we found 19 QTL for heat resistance, including 3 novel QTL outside the QTL found in previous studies. Conclusion: The QTL found in this study encompassed 19 heat-responsive genes found in the previous gene expression profiling studies, suggesting that they were strong candidates for heat resistance. This result provides new insights into the genetic architecture of heat resistance. It also emphasizes the advantages of genome-wide deficiency screen using isogenic deficiency libraries

Plant canopy shape and the influences on UV exposures to the canopy

The solar spectra at selected sites over hemispherical, conical and pinnacle plant canopy models has been evaluated with a dosimetric technique. The irradiance at the sites varies by up to a factor of 0.31 compared to the irradiance on a horizontal plane. The biologically effective (UVBE) exposures evaluated with the dosimetric technique at sites over the plant canopy are up to 19% of that on a horizontal plane. Compared to a spectroradiometer, the technique provides a more practicable method of measuring the UVBE exposures at multiple sites over a plant canopy. Usage of a dosimeter at one site to provide the exposures at that site for different sun angles introduces an error of more than 50%. Knowledge of the spectra allowed the UV and UVBE exposures to be calculated at each site along with the exposures to the entire canopies. These were dependent on the sun angle and the canopy shape. For plant damage, the UVBE was a maximum of about 1.4 mJ cm-2/min. Compared to the hemispherical canopy, the UVBE exposure for generalised plant damage was 45% less for the pinnacle canopy and 23% less for the conical canopy. The canopy exposures could not be determined from measurements of the ambient exposure

Electronic and Magnetic Structures of Sr2FeMoO6

We have investigated the electronic and magnetic structures of Sr2FeMoO6 employing site-specific direct probes, namely x-ray absorption spectroscopy with linearly and circularly polarized photons. In contrast to some previous suggestions, the results clearly establish that Fe is in the formal trivalent state in this compound. With the help of circularly polarized light, it is unambiguously shown that the moment at the Mo sites is below the limit of detection (< 0.25mu_B), resolving a previous controversy. We also show that the decrease of the observed moment in magnetization measurements from the theoretically expected value is driven by the presence of mis-site disorder between Fe and Mo sites.Comment: To appear in Physical Review Letter

Light-Promoted Hydrogenation of Carbon Dioxide¿An Overview

[EN] Hydrogenation of carbon dioxide is considered as a viable strategy to generate fuels while closing the carbon cycle (heavily disrupted by the abuse in the exploitation of fossil resources) and reducing greenhouse gas emissions. The process can be performed by heat-powered catalytic processes, albeit conversion and selectivity tend to be reduced at increasing temperatures owing to thermodynamic constraints. Recent investigations, as summarised in this overview, have proven that light activation is a distinct possibility for the promotion of CO2 hydrogenation to fuels. This effect is particularly beneficial in methanation processes, which can be enhanced under simulated solar irradiation using materials based on metallic nanoparticles as catalysts. The use of nickel, ruthenium and rhodium has led to substantial efficiencies. Light-promoted processes entail performances on a par with (or even superior to) those of thermally-induced, industrially-relevant, commercial technologies.The author thanks the Spanish Government (Ministerio de Economía y Competitividad, MINECO) for financial support via a project for young researchers (CTQ2015-74138-JIN), and the ‘‘Severo Ochoa’’ programme (SEV 2012-0267). The European Union is also acknowledged for the SynCatMatch project (ERCAdG-2014-671093)Puga Vaca, A. (2016). Light-Promoted Hydrogenation of Carbon Dioxide¿An Overview. Topics in Catalysis. 59(15-16):1268-1278. https://doi.org/10.1007/s11244-016-0658-zS126812785915-16Centi G, Perathoner S (2009) Opportunities and prospects in the chemical recycling of carbon dioxide to fuels. Catal Today 148:191–205Aresta M, Dibenedetto A, Angelini A (2014) Catalysis for the valorization of exhaust carbon: from CO2 to chemicals, materials, and fuels. technological use of CO2. Chem Rev 114:1709–1742Centi G, Quadrelli EA, Perathoner S (2013) Catalysis for CO2 conversion: a key technology for rapid introduction of renewable energy in the value chain of chemical industries. Energy Environ Sci 6:1711–1731Wang W, Wang S, Ma X, Gong J (2011) Recent advances in catalytic hydrogenation of carbon dioxide. Chem Soc Rev 40:3703–3727Gao J, Liu Q, Gu F, Liu B, Zhong Z, Su F (2015) Recent advances in methanation catalysts for the production of synthetic natural gas. RSC Adv 5:22759–22776Armaroli N, Balzani V (2011) The hydrogen issue. ChemSusChem 4:21–36Gao J, Wang Y, Ping Y, Hu D, Xu G, Gu F, Su F (2012) A thermodynamic analysis of methanation reactions of carbon oxides for the production of synthetic natural gas. RSC Adv 2:2358–2368Jadhav SG, Vaidya PD, Bhanage BM, Joshi JB (2014) Catalytic carbon dioxide hydrogenation to methanol: a review of recent studies. Chem Eng Res Des 92:2557–2567de Richter RK, Ming T, Caillol S (2013) Fighting global warming by photocatalytic reduction of CO2 using giant photocatalytic reactors. Renew Sust Energ Rev 19:82–106Schach M-O, Schneider R, Schramm H, Repke J-U (2010) Techno-economic analysis of postcombustion processes for the capture of carbon dioxide from power plant flue gas. Ind Eng Chem Res 49:2363–2370Centi G, Perathoner S (2010) Towards solar fuels from water and CO2. ChemSusChem 3:195–208Corma A, Garcia H (2013) Photocatalytic reduction of CO2 for fuel production: possibilities and challenges. J Catal 308:168–175Izumi Y (2013) Recent advances in the photocatalytic conversion of carbon dioxide to fuels with water and/or hydrogen using solar energy and beyond. Coord Chem Rev 257:171–186Dhakshinamoorthy A, Navalon S, Corma A, Garcia H (2012) Photocatalytic CO2 reduction by TiO2 and related titanium containing solids. Energy Environ Sci 5:9217–9233Indrakanti VP, Kubicki JD, Schobert HH (2009) Photoinduced activation of CO2 on Ti-based heterogeneous catalysts: current state, chemical physics-based insights and outlook. Energy Environ Sci 2:745–758Ozin GA (2015) You can’t have an energy revolution without transforming advances in materials, chemistry and catalysis into policy change and action. Energy Environ Sci 8:1682–1684Ozin GA (2015) Throwing new light on the reduction of CO2. Adv Mater 27:1957–1963Abe T, Tanizawa M, Watanabe K, Taguchi A (2009) CO2 methanation property of Ru nanoparticle-loaded TiO2 prepared by a polygonal barrel-sputtering method. Energy Environ Sci 2:315–321Li Y, Lu G, Ma J (2014) Highly active and stable nano NiO-MgO catalyst encapsulated by silica with a core-shell structure for CO2 methanation. RSC Adv 4:17420–17428Garbarino G, Bellotti D, Riani P, Magistri L, Busca G (2015) Methanation of carbon dioxide on Ru/Al2O3 and Ni/Al2O3 catalysts at atmospheric pressure: catalysts activation, behaviour and stability. Int J Hydrogen Energy 40:9171–9182Carenco S, Wu C-H, Shavorskiy A, Alayoglu S, Somorjai GA, Bluhm H, Salmeron M (2015) Synthesis and structural evolution of nickel-cobalt nanoparticles under H2 and CO2. Small 11:3045–3053Sharafutdinov I, Elkjaer CF, de Carvalho HWP, Gardini D, Chiarello GL, Damsgaard CD, Wagner JB, Grunwaldt J-D, Dahl S, Chorkendorff I (2014) Intermetallic compounds of Ni and Ga as catalysts for the synthesis of methanol. J Catal 320:77–88Studt F, Sharafutdinov I, Abild-Pedersen F, Elkjaer CF, Hummelshøj JS, Dahl S, Chorkendorff I, Nørskov JK (2014) Discovery of a Ni-Ga catalyst for carbon dioxide reduction to methanol. Nat Chem 6:320–324Garbarino G, Riani P, Magistri L, Busca G (2014) A study of the methanation of carbon dioxide on Ni/Al2O3 catalysts at atmospheric pressure. Int J Hydrogen Energy 39:11557–11565Iablokov V, Beaumont SK, Alayoglu S, Pushkarev VV, Specht C, Gao J, Alivisatos AP, Kruse N, Somorjai GA (2012) Size-controlled model CO nanoparticle catalysts for CO2 hydrogenation: synthesis, characterization, and catalytic reactions. Nano Lett 12:3091–3096Behrens M, Studt F, Kasatkin I, Kühl S, Hävecker M, Abild-Pedersen F, Zander S, Girgsdies F, Kurr P, Kniep B-L, Tovar M, Fischer RW, Nørskov JK, Schlögl R (2012) The active site of methanol synthesis over Cu/ZnO/Al2O3 industrial catalysts. Science 336:893–897Graciani J, Mudiyanselage K, Xu F, Baber AE, Evans J, Senanayake SD, Stacchiola DJ, Liu P, Hrbek J, Fernández Sanz J, Rodriguez JA (2014) Highly active copper-ceria and copper-ceria-titania catalysts for methanol synthesis from CO2. Science 345:546–550Fiordaliso EM, Sharafutdinov I, Carvalho HWP, Grunwaldt J-D, Hansen TW, Chorkendorff I, Wagner JB, Damsgaard CD (2015) Intermetallic GaPd2 nanoparticles on SiO2 for low-pressure CO2 hydrogenation to methanol: catalytic performance and in situ characterization. ACS Catal 5:5827–5836Kohno Y, Tanaka T, Funabiki T, Yoshida S (1997) Photoreduction of carbon dioxide with hydrogen over ZrO2. Chem Commun 9:841–842Kohno Y, Tanaka T, Funabiki T, Yoshida S (2000) Photoreduction of CO2 with H2 over ZrO2. A study of interaction of hydrogen with photoexcited CO2. Phys Chem Chem Phys 2:2635–2639Kohno Y, Ishikawa H, Tanaka T, Funabiki T, Yoshida S (2001) Photoreduction of carbon dioxide by hydrogen over magnesium oxide. Phys Chem Chem Phys 3:1108–1113Teramura K, Tsuneoka H, Shishido T, Tanaka T (2008) Effect of H2 gas as a reductant on photoreduction of CO2 over a Ga2O3 photocatalyst. Chem Phys Lett 467:191–194Tsuneoka H, Teramura K, Shishido T, Tanaka T (2010) Adsorbed Species of CO2 and H2 on Ga2O3 for the Photocatalytic Reduction of CO2. J Phys Chem C 114:8892–8898Teramura K, S-i Okuoka, Tsuneoka H, Shishido T, Tanaka T (2010) Photocatalytic reduction of CO2 using H2 as reductant over ATaO3 photocatalysts (A = Li, Na, K). Appl Catal B 96:565–568Kohno Y, Hayashi H, Takenaka S, Tanaka T, Funabiki T, Yoshida S (1999) Photo-enhanced reduction of carbon dioxide with hydrogen over Rh/TiO2. J Photochem Photobiol A 126:117–123Lo C-C, Hung C-H, Yuan C-S, Wu J-F (2007) Photoreduction of carbon dioxide with H2 and H2O over TiO2 and ZrO2 in a circulated photocatalytic reactor. Sol Energy Mater Sol Cells 91:1765–1774Hoch LB, Wood TE, O’Brien PG, Liao K, Reyes LM, Mims CA, Ozin GA (2014) The rational design of a single-component photocatalyst for gas-phase CO2 reduction using both UV and visible light. Adv Sci 1:1400013Li M, Li P, Chang K, Wang T, Liu L, Kang Q, Ouyang S, Ye J (2015) Highly efficient and stable photocatalytic reduction of CO2 to CH4 over Ru loaded NaTaO3. Chem Commun 51:7645–7648Tahir M, Amin NS (2015) Photocatalytic CO2 reduction with H2 as reductant over copper and indium co-doped TiO2 nanocatalysts in a monolith photoreactor. Appl Catal A 493:90–102Tahir M, Amin NS (2016) Performance analysis of nanostructured NiO–In2O3/TiO2 catalyst for CO2 photoreduction with H2 in a monolith photoreactor. Chem Eng J 285:635–649Ahmed N, Shibata Y, Taniguchi T, Izumi Y (2011) Photocatalytic conversion of carbon dioxide into methanol using zinc-copper-M(III) (M = aluminum, gallium) layered double hydroxides. J Catal 279:123–135Ahmed N, Morikawa M, Izumi Y (2012) Photocatalytic conversion of carbon dioxide into methanol using optimized layered double hydroxide catalysts. Catal Today 185:263–269Yang C-C, Vernimmen J, Meynen V, Cool P, Mul G (2011) Mechanistic study of hydrocarbon formation in photocatalytic CO2 reduction over Ti-SBA-15. J Catal 284:1–8Thampi KR, Kiwi J, Grätzel M (1987) Methanation and photo-methanation of carbon-dioxide at room-temperature and atmospheric pressure. Nature 327:506–508O’Brien PG, Sandhel A, Wood TE, Jelle AA, Hoch LB, Perovic DD, Mims CA, Ozin GA (2014) Photomethanation of gaseous CO2 over RU/silicon nanowire catalysts with visible and near-infrared photons. Adv Sci 1:1400001Meng X, Wang T, Liu L, Ouyang S, Li P, Hu H, Kako T, Iwai H, Tanaka A, Ye J (2014) Photothermal conversion of CO2 into CH4 with H2 over group VIII nanocatalysts: an alternative approach for solar fuel production. Angew Chem Int Ed 53:11478–11482Sastre F, Puga AV, Liu L, Corma A, García H (2014) Complete photocatalytic reduction of CO2 to methane by H2 under solar light irradiation. J Am Chem Soc 136:6798–6801Hong J, Zhang W, Ren J, Xu R (2013) Photocatalytic reduction of CO2: a brief review on product analysis and systematic methods. Anal Methods 5:1086–1097Yang C-C, Yu Y-H, van der Linden B, Wu JCS, Mul G (2010) Artificial photosynthesis over crystalline TiO2-based catalysts: fact or fiction. J Am Chem Soc 132:8398–8406Kohno Y, Tanaka T, Funabiki T, Yoshida S (1998) Identification and reactivity of a surface intermediate in the photoreduction of CO2 with H2 over ZrO2. J Chem Soc Faraday Trans 94:1875–1880Teramura K, Tanaka T, Ishikawa H, Kohno Y, Funabiki T (2004) Photocatalytic reduction of CO2 to CO in the presence of H2 or CH4 as a reductant over MgO. J Phys Chem B 108:346–354Zhang H, Wang T, Wang J, Liu H, Dao TD, Li M, Liu G, Meng X, Chang K, Shi L, Nagao T, Ye J (2016) Surface-plasmon-enhanced photodriven CO2 reduction catalyzed by metal-organic-framework-derived iron nanoparticles encapsulated by ultrathin carbon layers. Adv Mater 28:3703–3710Morikawa M, Ahmed N, Yoshida Y, Izumi Y (2014) Photoconversion of carbon dioxide in zinc-copper-gallium layered double hydroxides: the kinetics to hydrogen carbonate and further to CO/methanol. Appl Catal B 144:561–569Sabatier P (1910) Making methane or mixtures of methane and hydrogen, US Pat. 956734Melsheimer J, Guo W, Ziegler D, Wesemann M, Schlögl R (1991) Methanation of carbon dioxide over Ru/Titania at room temperature: explorations for a photoassisted catalytic reaction. Catal Lett 11:157–168Lin X, Yang K, Si R, Chen X, Dai W, Fu X (2014) Photoassisted catalytic methanation of CO in H2-rich stream over Ru/TiO2. Appl Catal B 147:585–591Lin X, Lin L, Huang K, Chen X, Dai W, Fu X (2015) CO methanation promoted by UV irradiation over Ni/TiO2. Appl Catal B 168–169:416–422Sastre F, Oteri M, Corma A, García H (2013) Photocatalytic water gas shift using visible or simulated solar light for the efficient, room-temperature hydrogen generation. Energy Environ Sci 6:2211–2215Sastre F, Corma A, García H (2013) Visible-light photocatalytic conversion of carbon monoxide to methane by nickel(ii) oxide. Angew Chem Int Ed 52:12983–12987Zhao Y, Zhao B, Liu J, Chen G, Gao R, Yao S, Li M, Zhang Q, Gu L, Xie J, Wen X, Wu L-Z, Tung C-H, Ma D, Zhang T (2016) Oxide-modified nickel photocatalyst for the production of hydrocarbons in visible light. Angew. Chem. Int. Ed. 55:4215–4219Albero J, Garcia H, Corma A (2016) Temperature dependence of solar light assisted CO2 reduction on Ni based photocatalyst. Top Catal 59:787–79

Genome-wide deficiency mapping of the regions responsible for temporal canalization of the developmental processes of Drosophila melanogaster

Developmental processes of organisms are programed to proceed in a finely regulated manner and finish within a certain period of time depending on the ambient environmental conditions. Therefore, variation in the developmental period under controlled genetic and environmental conditions indicates innate instability of the developmental process. In this study, we aimed to determine whether a molecular machinery exists that regulates the canalization of the developmental period and, if so, to test whether the same mechanism also stabilizes a morphological trait. To search for regions that influence the instability of the developmental period, we conducted genome-wide deficiency mapping with 441 isogenic deficiency strains covering 65.5% of the Drosophila melanogaster genome. We found that 11 independent deficiencies significantly increased the instability of the developmental period and 5 of these also significantly increased the fluctuating asymmetry of wing shape although there was no significant correlation between the instabilities of developmental period and wing shape in general. These results suggest that canalization processes of the developmental period and morphological traits are at least partially independent. Our findings emphasize the potential importance of temporal variation in development as an indicator of developmental stability and canalization and provide a novel perspective for understanding the regulation of phenotypic variability

Metabolic syndrome is associated with change in subclinical arterial stiffness - A community-based Taichung Community Health Study

<p>Abstract</p> <p>Background</p> <p>The aim of this study was to evaluate the effect of MetS on arterial stiffness in a longitudinal study.</p> <p>Methods</p> <p>Brachial-ankle pulse wave velocity (baPWV), a measurement interpreted as arterial stiffness, was measured in 1518 community-dwelling persons at baseline and re-examined within a mean follow-up period of 3 years. Multivariate linear regression with generalized estimating equations (GEE) were used to examine the longitudinal relationship between MetS and its individual components and baPWV, while multivariate logistic regression with GEE was used to examine the longitudinal relationship between MetS and its individual components and the high risk group with arterial stiffness.</p> <p>Results</p> <p>Subjects with MetS showed significantly greater baPWV at the end point than those without MetS, after adjusting for age, gender, education, hypertension medication and mean arterial pressure (MAP). MetS was associated with the top quartile of baPWV (the high-risk group of arterial stiffness, adjusted odds ratio [95% confidence interval] 1.52 [1.21-1.90]), and a significant linear trend of risk for the number of components of MetS was found (p for trend < 0.05). In further considering the individual MetS component, elevated blood pressure and fasting glucose significantly predicted a high risk of arterial stiffness (adjusted OR [95% CI] 3.72 [2.81-4.93] and 1.35 [1.08-1.68], respectively).</p> <p>Conclusions</p> <p>MetS affects the subject's progression to arterial stiffness. Arterial stiffness increased as the number of MetS components increased. Management of MetS is important for preventing the progression to advanced arterial stiffness.</p

Expression of excess receptors and negative feedback control of signal pathways are required for rapid activation and prompt cessation of signal transduction

Cellular signal transduction is initiated by the binding of extracellular ligands to membrane receptors. Receptors are often expressed in excess, and cells are activated when a small number of receptors bind ligands. Intracellular signal proteins are act

Measurement of Epstein-Barr virus DNA load using a novel quantification standard containing two EBV DNA targets and SYBR Green I dye

<p>Abstract</p> <p>Background</p> <p>Reactivation of Epstein-Barr virus (EBV) infection may cause serious, life-threatening complications in immunocompromised individuals. EBV DNA is often detected in EBV-associated disease states, with viral load believed to be a reflection of virus activity. Two separate real-time quantitative polymerase chain reaction (QPCR) assays using SYBR Green I dye and a single quantification standard containing two EBV genes, Epstein-Barr nuclear antigen-1 (EBNA-1) and BamHI fragment H rightward open reading frame-1 (BHRF-1), were developed to detect and measure absolute EBV DNA load in patients with various EBV-associated diseases. EBV DNA loads and viral capsid antigen (VCA) IgG antibody titres were also quantified on a population sample.</p> <p>Results</p> <p>EBV DNA was measurable in ethylenediaminetetraacetic acid (EDTA) whole blood, peripheral blood mononuclear cells (PBMCs), plasma and cerebrospinal fluid (CSF) samples. EBV DNA loads were detectable from 8.0 × 10²to 1.3 × 10⁸copies/ml in post-transplant lymphoproliferative disease (n = 5), 1.5 × 10³to 2.0 × 10⁵copies/ml in infectious mononucleosis (n = 7), 7.5 × 10⁴to 1.1 × 10⁵copies/ml in EBV-associated haemophagocytic syndrome (n = 1), 2.0 × 10²to 5.6 × 10³copies/ml in HIV-infected patients (n = 12), and 2.0 × 10²to 9.1 × 10⁴copies/ml in the population sample (n = 218). EBNA-1 and BHRF-1 DNA were detected in 11.0% and 21.6% of the population sample respectively. There was a modest correlation between VCA IgG antibody titre and BHRF-1 DNA load (rho = 0.13, p = 0.05) but not EBNA-1 DNA load (rho = 0.11, p = 0.11).</p> <p>Conclusion</p> <p>Two sensitive and specific real-time PCR assays using SYBR Green I dye and a single quantification standard containing two EBV DNA targets, were developed for the detection and measurement of EBV DNA load in a variety of clinical samples. These assays have application in the investigation of EBV-related illnesses in immunocompromised individuals.</p