Persistent variations in national asthma mortality, hospital admissions and prevalence by socioeconomic status and region in England

Background The UK-wide National Review of Asthma Deaths sought to identify avoidable factors from the high numbers of deaths, but did not examine variation by socioeconomic status (SES) or region. Methods We used asthma deaths in England over the period 2002–2015 obtained from national deaths registers, summarised by quintiles of Index of Multiple Deprivation (IMD) and Government Office Region. Emergency asthma admissions were obtained from Hospital Episode Statistics for England 2001–2011. The prevalence of asthma was derived from the Health Survey for England 2010. Associations of mortality, admissions and prevalence with IMD quintile and region were estimated cross-sectionally using incidence rate ratios (IRRs) adjusted for age and sex and, where possible, smoking. Results Asthma mortality decreased among more deprived groups at younger ages. Among 5–44 year olds, those in the most deprived quintile, mortality was 19% lower than those in the least deprived quintile (IRR 0.81 (95% CI 0.69 to 0.96). In older adults, this pattern was reversed (45–74 years: IRR 1.37 (1.24–1.52), ≥75 years: IRR 1.30 (1.22–1.39)). In 5–44 year olds the inverse trend with asthma mortality contrasted with large positive associations for admissions (IRR 3.34 (3.30–3.38)) and prevalence of severe symptoms (IRR 2.38 (1.70–3.33)). Prevalence trends remained after adjustment for smoking. IRRs for asthma mortality, admissions and prevalence showed significant heterogeneity between English regions. Conclusions Despite asthma mortality, emergency admissions and prevalence decreasing over recent decades, England still experiences significant SES and regional variations. The previously undocumented inverse relation between deprivation and mortality in the young requires further investigation

Generating reversible circuits from higher-order functional programs

Boolean reversible circuits are boolean circuits made of reversible elementary gates. Despite their constrained form, they can simulate any boolean function. The synthesis and validation of a reversible circuit simulating a given function is a difficult problem. In 1973, Bennett proposed to generate reversible circuits from traces of execution of Turing machines. In this paper, we propose a novel presentation of this approach, adapted to higher-order programs. Starting with a PCF-like language, we use a monadic representation of the trace of execution to turn a regular boolean program into a circuit-generating code. We show that a circuit traced out of a program computes the same boolean function as the original program. This technique has been successfully applied to generate large oracles with the quantum programming language Quipper.Comment: 21 pages. A shorter preprint has been accepted for publication in the Proceedings of Reversible Computation 2016. The final publication is available at http://link.springer.co

Genetic architecture and population structure of Oat Landraces (Avena sativa L.) using molecular and morphological descriptors

439-450Oat is grown as winter forage in India. It is a self-pollinated crop with less variability. However, the variation for different morphological traits in oat germplasm may be available at genotypic level. The present study was conducted to find out the genetic diversity among 24 oat landraces using 9 morphological traits and 24 SSR primers. Morphological data observed across the 24 landraces showed wide variation and grouped various landraces into two clusters. GFY and DMY were positively and significantly correlated with most of the traits studied. The molecular analysis using 24 SSR primers resulted amplification of 62 polymorphic alleles with an average of 2.58 alleles per primer. Size of amplified alleles ranged from 70 to 480 bp. Mean polymorphic information content was 0.42 showing moderate level of SSR polymorphism. Cluster analysis based on SSR data differentiated 24 oat landraces into three major clusters. Bayesian model-based STRUCTURE analysis assigned landraces into two clusters and showed the extent of admixture within individuals. Clustering pattern of oat landraces based on SSR marker profiles were different from that of morphometric traits. So, based on the pooled analysis at morphological and molecular level, the landraces IG-02-121, IG-02-129 and IG-02-113 were found superior for morphological traits as well as most distant among all the landraces under study. Hence, these landraces could be used in for future breeding programmes for genetic improvement in oats

Allele mining in β-lactoglobulin gene of Capra hircus

β-Lactoglobulin (β-LG) genetic polymorphisms are important and well known due to their effects on quantitative traits and technological properties of milk. At the DNA level, polymerase chain reaction (PCR)-single-strand conformation polymorphism (SSCP) allows for the detection of unknown polymorphisms at β-LG loci. Here we describe the usefulness of the PCR-SSCP technique for β-LG typing. In the present study, we amplified and sequenced the part of promoter region and all the seven exons containing the entire coding and untranslated region for the β-lactoglobulin gene in best dairy goat breeds of India namely: Jamunapari and Jakhrana. Nine polymorphisms were detected, one in the l promoter region, four in the introns and four in the exons of the β-lactoglobulin gene. All polymorphisms were single nucleotide substitutions. The polymorphisms in the coding region did not produce any amino acid change.Key words: β-Lactoglobulin gene, dairy goats, polymorphism, single nucleotide polymorphism (SNP), single strand conformational polymorphism (SSCP)

A Method for Serial Tissue Processing and Parallel Analysis of Aberrant Crypt Morphology, Mucin Depletion, and Beta-Catenin Staining in an Experimental Model of Colon Carcinogenesis

The use of architectural and morphological characteristics of cells for establishing prognostic indicators by which individual pathologies are assigned grade and stage is a well-accepted practice. Advances in automated micro- and macroscopic image acquisition and digital image analysis have created new opportunities in the field of prognostic assessment; but, one area in experimental pathology, animal models for colon cancer, has not taken advantage of these opportunities. This situation is primarily due to the methods available to evaluate the colon of the rodent for the presence of premalignant and malignant pathologies. We report a new method for the excision and processing of the entire colon of the rat and illustrate how this procedure permitted the quantitative assessment of aberrant crypt foci (ACF), a premalignant colon pathology, for characteristics consistent with progression to malignancy. ACF were detected by methylene blue staining and subjected to quantitative morphometric analysis. Colons were then restained with high iron diamine–alcian blue for assessment of mucin depletion using an image overlay to associate morphometric data with mucin depletion. The subsequent evaluation of ACF for beta-catenin staining is also demonstrated. The methods described are particularly relevant to the screening of compounds for cancer chemopreventive activity