Spatial arrangement of LD motif-interacting residues on focal adhesion targeting domain of Focal Adhesion Kinase determine domain-motif interaction affinity and specificity

Background: Leucine rich Aspartate motifs (LD motifs) are molecular recognition motifs on Paxillin that recognize LD-motif binding domains (LDBD) of a number of focal adhesion proteins in order to carry out downstream signaling and actin cytoskeleton remodeling. In this study, we identified structural features within LDBDs that influence their binding affinity with Paxillin LD motifs. Methods: Various point mutants of focal adhesion targeting (FAT) domain of Focal Adhesion Kinase (FAK) were created by moving a key Lysine residue two and three helical turns in order to match the unique conformations as observed in LDBDs of two other focal adhesion proteins, Vinculin and CCM3. Results: This led to identify a mutant of FAT domain of FAK, named as FAT(NV) (Asn992 of FAT domain was replaced by Val), with remarkable high affinity for LD1 (Kd = 1.5 µM vs no-binding with wild type) and LD2 peptides (Kd = 7.2 µM vs 63 µM with wild type). Consistently, the focal adhesions of MCF7 cells expressing FAK(NV) were highly stable (turnover rate = 1.25 × 10-5 µm2/s) as compared to wild type FAK transfected cells (turnover rate = 1.5 × 10-3 µm2/s). Conclusions: We observed that the relative disposition of key LD binding amino-acids at LDBD surface, hydrophobic burial of long Leucine side chains of LD-motifs and complementarity of charged surfaces are the key factors determining the binding affinities of LD motifs with LDBDs. General significance: Our study will help in protein engineering of FAT domain of FAK by modulating FAK-LD motif interactions which have implications in cellular focal adhesions and cell migration

Tadpole Cancellation in Unoriented Liouville Theory

The tadpole cancellation in the unoriented Liouville theory is discussed. Using two different methods -- the free field method and the boundary-crosscap state method, we derive one-loop divergences. Both methods require two D1-branes with the symplectic gauge group to cancel the orientifold tadpole divergence. However, the finite part left is different in each method and this difference is studied. We also discuss the validity of the free field method and the possible applications of our result.Comment: 12 pages; v2: sign error in the crosscap state is corrected, some related argumets are modified and clarified; v3: minor corrections; v4:reference adde

Vortex dynamics and upper critical fields in ultrathin Bi films

Current-voltage (I-V) characteristics of quench condensed, superconducting, ultrathin $Bi$ films in a magnetic field are reported. These I-V's show hysteresis for all films, grown both with and without thin $Ge$ underlayers. Films on Ge underlayers, close to superconductor-insulator transition (SIT), show a peak in the critical current, indicating a structural transformation of the vortex solid (VS). These underlayers, used to make the films more homogeneous, are found to be more effective in pinning the vortices. The upper critical fields (B$_{c2}$) of these films are determined from the resistive transitions in perpendicular magnetic field. The temperature dependence of the upper critical field is found to differ significantly from Ginzburg-Landau theory, after modifications for disorder.Comment: Phys Rev B, to be published Figure 6 replaced with correct figur

SU(2) WZW Theory at Higher Genera

We compute, by free field techniques, the scalar product of the SU(2) Chern-Simons states on genus > 1 surfaces. The result is a finite-dimensional integral over positions of ``screening charges'' and one complex modular parameter. It uses an effective description of the CS states closely related to the one worked out by Bertram. The scalar product formula allows to express the higher genus partition functions of the WZW conformal field theory by finite-dimensional integrals. It should provide the hermitian metric preserved by the Knizhnik-Zamolodchikov-Bernard connection describing the variations of the CS states under the change of the complex structure of the surface.Comment: 44 pages, IHES/P/94/10, Latex fil

Evolution of Parton Fragmentation Functions at Finite Temperature

The first order correction to the parton fragmentation functions in a thermal medium is derived in the leading logarithmic approximation in the framework of thermal field theory. The medium-modified evolution equations of the parton fragmentation functions are also derived. It is shown that all infrared divergences, both linear and logarithmic, in the real processes are canceled among themselves and by corresponding virtual corrections. The evolution of the quark number and the energy loss (or gain) induced by the thermal medium are investigated.Comment: 21 pages in RevTex, 10 figure

Transitional circulation and hemodynamic monitoring in newborn infants

Transitional circulation is normally transient after birth but can vary markedly between infants. It is actually in a state of transition between fetal (in utero) and neonatal (postnatal) circulation. In the absence of definitive clinical trials, information from applied physiological studies can be used to facilitate clinical decision making in the presence of hemodynamic compromise. This review summarizes the peculiar physiological features of the circulation as it transitions from one phenotype into another in term and preterm infants. The common causes of hemodynamic compromise during transition, intact umbilical cord resuscitation, and advanced hemodynamic monitoring are discussed.Developmen

Dynamical Coupling between a Bose-Einstein Condensate and a Cavity Optical Lattice

A Bose-Einstein condensate is dispersively coupled to a single mode of an ultra-high finesse optical cavity. The system is governed by strong interactions between the atomic motion and the light field even at the level of single quanta. While coherently pumping the cavity mode the condensate is subject to the cavity optical lattice potential whose depth depends nonlinearly on the atomic density distribution. We observe bistability already below the single photon level and strong back-action dynamics which tunes the system periodically out of resonance.Comment: 5 pages, 4 figure