Wavefront shaping of a Bessel light field enhances light sheet microscopy with scattered light

The project was supported by the UK Engineering and Physical Sciences Research Council, RS MacDonald Charitable Trust, SULSA, and the St. Andrews 600th anniversary BRAINS appeal. K. D. is a Royal Society Wolfson Merit Award holder.Light sheet microscopy has seen a resurgence as it facilitates rapid, high contrast, volumetric imaging with minimal sample exposure. Initially developed for imaging scattered light, this application of light sheet microscopy has largely been overlooked but provides an endogenous contrast mechanism which can complement fluorescence imaging and requires very little or no modification to an existing light sheet fluorescence microscope. Fluorescence imaging and scattered light imaging differ in terms of image formation. In the former the detected light is incoherent and weak whereas in the latter the coherence properties of the illumination source, typically a laser, dictate the coherence of detected light, but both are dependent on the quality of the illuminating light sheet. Image formation in both schemes can be understood as the convolution of the light sheet with the specimen distribution. In this paper we explore wavefront shaping for the enhancement of light sheet microscopy with scattered light. We show experimental verification of this result, demonstrating the use of the propagation invariant Bessel beam to extend the field of view of a high resolution scattered light, light sheet microscope and its application to imaging of biological super-cellular structures with sub-cellular resolution. Additionally, complementary scattering and fluorescence imaging is used to characterize the enhancement, and to develop a deeper understanding of the differences of image formation between contrast mechanisms in light sheet microscopy.Publisher PD

Gas stripping in galaxy clusters: a new SPH simulation approach

The influence of a time-varying ram pressure on spiral galaxies in clusters is explored with a new simulation method based on the N-body SPH/tree code GADGET. We have adapted the code to describe the interaction of two different gas phases, the diffuse hot intracluster medium (ICM) and the denser and colder interstellar medium (ISM). Both the ICM and ISM components are introduced as SPH particles. As a galaxy arrives on a highly radial orbit from outskirts to cluster center, it crosses the ICM density peak and experiences a time-varying wind. Depending on the duration and intensity of the ISM-ICM interaction, early and late type galaxies in galaxy clusters with either a large or small ICM distribution are found to show different stripping efficiencies, amounts of reaccretion of the extra-planar ISM, and final masses. We compare the numerical results with analytical approximations of different complexity and indicate the limits of the Gunn & Gott simple stripping formula. Our investigations emphasize the role of the galactic orbital history to the stripping amount. We discuss the contribution of ram pressure stripping to the origin of the ICM and its metallicity. We propose gas accumulations like tails, filaments, or ripples to be responsible for stripping in regions with low overall ICM occurrence.Comment: 18 pages, 23 figures, accepted for publication in A&

Condensation of `composite bosons' in a rotating BEC

We provide evidence for several novel phases in the dilute limit of rotating BECs. By exact calculation of wavefunctions and energies for small numbers of particles, we show that the states near integer angular momentum per particle are best considered condensates of composite entities, involving vortices and atoms. We are led to this result by explicit comparison with a description purely in terms of vortices. Several parallels with the fractional quantum Hall effect emerge, including the presence of the Pfaffian state.Comment: 4 pages, Latex, 3 figure

Kinetic decoupling of neutralino dark matter

After neutralinos cease annihilating in the early Universe, they may still scatter elastically from other particles in the primordial plasma. At some point in time, however, they will eventually stop scattering. We calculate the cross sections for neutralino elastic scattering from standard-model particles to determine the time at which this kinetic decoupling occurs. We show that kinetic decoupling occurs above a temperature $T\sim$ MeV. Thereafter, neutralinos act as collisionless cold dark matter.Comment: Replaced with revised version, new references adde

M Dwarfs in SDSS Stripe 82: Photometric Light Curves and Flare Rate Analysis

We present a flare rate analysis of 50,130 M dwarf light curves in SDSS Stripe 82. We identified 271 flares using a customized variability index to search ~2.5 million photometric observations for flux increases in the u- and g-bands. Every image of a flaring observation was examined by eye and with a PSF-matching and image subtraction tool to guard against false positives. Flaring is found to be strongly correlated with the appearance of H-alpha in emission in the quiet spectrum. Of the 99 flare stars that have spectra, we classify 8 as relatively inactive. The flaring fraction is found to increase strongly in stars with redder colors during quiescence, which can be attributed to the increasing flare visibility and increasing active fraction for redder stars. The flaring fraction is strongly correlated with |Z| distance such that most stars that flare are within 300 pc of the Galactic plane. We derive flare u-band luminosities and find that the most luminous flares occur on the earlier-type M dwarfs. Our best estimate of the lower limit on the flaring rate (averaged over Stripe 82) for flares with \Delta u \ge 0.7 magnitudes on stars with u < 22 is 1.3 flares hour^-1 square degree^-1 but can vary significantly with the line-of-sight.Comment: 44 pages, 13 figure

Efficient Photometric Selection of Quasars from the Sloan Digital Sky Survey: 100,000 z<3 Quasars from Data Release One

We present a catalog of 100,563 unresolved, UV-excess (UVX) quasar candidates to g=21 from 2099 deg^2 of the Sloan Digital Sky Survey (SDSS) Data Release One (DR1) imaging data. Existing spectra of 22,737 sources reveals that 22,191 (97.6%) are quasars; accounting for the magnitude dependence of this efficiency, we estimate that 95,502 (95.0%) of the objects in the catalog are quasars. Such a high efficiency is unprecedented in broad-band surveys of quasars. This ``proof-of-concept'' sample is designed to be maximally efficient, but still has 94.7% completeness to unresolved, g<~19.5, UVX quasars from the DR1 quasar catalog. This efficient and complete selection is the result of our application of a probability density type analysis to training sets that describe the 4-D color distribution of stars and spectroscopically confirmed quasars in the SDSS. Specifically, we use a non-parametric Bayesian classification, based on kernel density estimation, to parameterize the color distribution of astronomical sources -- allowing for fast and robust classification. We further supplement the catalog by providing photometric redshifts and matches to FIRST/VLA, ROSAT, and USNO-B sources. Future work needed to extend the this selection algorithm to larger redshifts, fainter magnitudes, and resolved sources is discussed. Finally, we examine some science applications of the catalog, particularly a tentative quasar number counts distribution covering the largest range in magnitude (14.2<g<21.0) ever made within the framework of a single quasar survey.Comment: 35 pages, 11 figures (3 color), 2 tables, accepted by ApJS; higher resolution paper and ASCII version of catalog available at http://sdss.ncsa.uiuc.edu/qso/nbckde

Quantum Phases of Vortices in Rotating Bose-Einstein Condensates

We investigate the groundstates of weakly interacting bosons in a rotating trap as a function of the number of bosons, $N$, and the average number of vortices, $N_V$. We identify the filling fraction $\nu\equiv N/N_V$ as the parameter controlling the nature of these states. We present results indicating that, as a function of $\nu$, there is a zero temperature {\it phase transition} between a triangular vortex lattice phase, and strongly-correlated vortex liquid phases. The vortex liquid phases appear to be the Read-Rezayi parafermion states

Quantum and classical localisation, the spin quantum Hall effect and generalisations

We consider network models for localisation problems belonging to symmetry class C. This symmetry class arises in a description of the dynamics of quasiparticles for disordered spin-singlet superconductors which have a Bogoliubov - de Gennes Hamiltonian that is invariant under spin rotations but not under time-reversal. Our models include but also generalise the one studied previously in the context of the spin quantum Hall effect. For these systems we express the disorder-averaged conductance and density of states in terms of sums over certain classical random walks, which are self-avoiding and have attractive interactions. A transition between localised and extended phases of the quantum system maps in this way to a similar transition for the classical walks. In the case of the spin quantum Hall effect, the classical walks are the hulls of percolation clusters, and our approach provides an alternative derivation of a mapping first established by Gruzberg, Read and Ludwig, Phys. Rev. Lett. 82, 4254 (1999).Comment: 11 pages, 5 figure

Vitamin D status in cats with feline immunodeficiency virus

Feline immunodeficiency virus (FIV) is a lentivirus that can lead to a syndrome of acquired immune dysfunction. Infected cats often remain asymptomatic for several years before immune dysfunction leads to an increased risk for the development of systemic diseases, neoplasia and opportunistic infections. FIV is structurally related to human immunodeficiency virus (HIV) and the pathogenesis of FIV‐related disease is similar to that seen in HIV‐infected patients. Observational studies have documented an association between low plasma vitamin D and HIV infection. Vitamin D status has been shown to be associated with HIV‐related disease progression, morbidity and mortality. The objective of this study was to examine the hypothesis that vitamin D status, as assessed by serum 25‐hydroxyvitamin D [25(OH)D] concentrations, are lower in cats with FIV infection compared to healthy control cats. Serum 25(OH)D concentrations were measured in 20 healthy cats, 39 hospitalized ill cats and 59 cats infected with FIV. Cats which were FIV infected had significantly lower 25(OH)D concentrations compared to healthy control cats. Serum 25(OH)D concentrations were not significantly different between FIV‐infected cats and hospitalized ill cats. Further investigations are warranted to determine whether vitamin D status influences the prognosis of cats infected with FIV

Flat feline faces: is brachycephaly associated with respiratory abnormalities in the domestic cat (Felis catus)?

There has been little research into brachycephalism and associated disorders in cats. A questionnaire aimed at cat owners was used to determine the relationship between feline facial conformation and owner-reported cat management requirements and respiratory abnormalities. Owner-submitted photographs of cats were used to develop novel measures of skull conformation. One thousand valid questionnaires were received. Within these there were 373 valid photographs that allowed measurement of muzzle ratio (M%) and 494 that allowed nose position ratio (NP%). The data included 239 cats for which both measurements were available. Owners reported lifestyle factors (e.g. feeding type, grooming routine, activity level), physical characteristics (e.g. hair length) and other health characteristics of their cat (e.g. tear staining, body condition score). A composite respiratory score (RS) was calculated for each cat using their owner’s assessment of respiratory noise whilst their cat was asleep and then breathing difficulty following activity. Multivariate analyses were carried out using linear models to explore the relationship between RS and facial conformation, and lifestyle risk factors. The results showed that reductions in NP% and M% were significantly associated with RS (P < 0.001 and P = 0.026, respectively) and that the relationship was significantly negatively correlated (r = -0.56, P < 0.001 for both). Respiratory score was also significantly associated with increased presence of tear staining (P < 0.001) and a sedentary lifestyle (P = 0.01). This study improves current knowledge concerning cats with breeding-related alterations in skull confirmation and indicates that brachycephalism may have negative respiratory implications for cat health and welfare, as has been previously shown in dogs