361 research outputs found
Identification of subtype-specific metastasis-related genetic signatures in sarcoma
Background: Sarcomas are heterogeneous rare malignancies constituting approximately 1% of all solid cancers in adults and including more than 70 histological and molecular subtypes with different pathological and clinical development characteristics.
Method: We identified prognostic biomarkers of sarcomas by integrating clinical information and RNA-seq data from TCGA and GEO databases. In addition, results obtained from cell cycle, cell migration, and invasion assays were used to assess the capacity for Tanespimycin to inhibit the proliferation and metastasis of sarcoma.
Results: Sarcoma samples (N = 536) were divided into four pathological subtypes including DL (dedifferentiated liposarcoma), LMS (leiomyosarcoma), UPS (undifferentiated pleomorphic sarcomas), and MFS (myxofibrosarcoma). RNA-seq expression profile data from the TCGA dataset were used to analyze differentially expressed genes (DEGs) within metastatic and non-metastatic samples of these four sarcoma pathological subtypes with DEGs defined as metastatic-related signatures (MRS). Prognostic analysis of MRS identified a group of genes significantly associated with prognosis in three pathological subtypes: DL, LMS, and UPS. ISG15, NUP50, PTTG1, SERPINE1, and TSR1 were found to be more likely associated with adverse prognosis. We also identified Tanespimycin as a drug exerting inhibitory effects on metastatic LMS subtype and therefore can serve a potential treatment for this type of sarcoma.
Conclusions: These results provide new insights into the pathogenesis, diagnosis, treatment, and prognosis of sarcomas and provide new directions for further study of sarcoma
Responses to soil pH gradients of inorganic phosphate solubilizing bacteria community
Soil pH is commonly considered a dominant factor affecting the function of microbiota. Few studies, however, have focused on communities of bacteria able to solubilize inorganic phosphate (iPSB), which are important for the mobilization of soil phosphorus (P), because finding an effective method to assess the abundance and diversity of iPSB communities is difficult. We used a newly reported method of database alignment and quantified the gene pqqC to analyze the compositions of iPSB communities from five soils with pH gradients ranging from 4 to 8. The iPSB community structure differed significantly between these soil types. Among iPSB community, Bacillus was the dominant genus, followed by Arthrobacter and Streptomyces. A redundancy analysis indicated that soil pH was the most important of 15 soil factors and their pairwise interactions, accounting for 5.12% of the variance. The abundance of the iPSB communities increased with pH within the gradients which was confirmed by experimental adjustment of pH, suggesting that the defect P status in high pH soil was speculated as the driving force of iPSB community population. Our study demonstrated the dominant role of soil pH on the iPSB community, which may contribute to the understanding the possible mechanism of microbial P mobilization for better improvement of P use-efficiency
Precision measurement of the branching fractions of J/psi -> pi+pi-pi0 and psi' -> pi+pi-pi0
We study the decays of the J/psi and psi' mesons to pi+pi-pi0 using data
samples at both resonances collected with the BES III detector in 2009. We
measure the corresponding branching fractions with unprecedented precision and
provide mass spectra and Dalitz plots. The branching fraction for J/psi ->
pi+pi-pi0 is determined to be (2.137 +- 0.004 (stat.) +0.058-0.056 (syst.)
+0.027-0.026 (norm.))*10-2, and the branching fraction for psi' -> pi+pi-pi0 is
measured as (2.14 +- 0.03 (stat.) +0.08-0.07 (syst.) +0.09-0.08 (norm.))*10-4.
The J/psi decay is found to be dominated by an intermediate rho(770) state,
whereas the psi' decay is dominated by di-pion masses around 2.2 GeV/c2,
leading to strikingly different Dalitz distributions.Comment: 15 pages, 2 figure
Measurement of azimuthal asymmetries in inclusive charged dipion production in annihilations at = 3.65 GeV
We present a measurement of the azimuthal asymmetries of two charged pions in
the inclusive process based on a data set of 62
at the center-of-mass energy GeV collected with
the BESIII detector. These asymmetries can be attributed to the Collins
fragmentation function. We observe a nonzero asymmetry, which increases with
increasing pion momentum. As our energy scale is close to that of the existing
semi-inclusive deep inelastic scattering experimental data, the measured
asymmetries are important inputs for the global analysis of extracting the
quark transversity distribution inside the nucleon and are valuable to explore
the energy evolution of the spin-dependent fragmentation function.Comment: 7 pages, 5 figure
Study of and
The decays and have been
investigated with a sample of 225.2 million events collected with the
BESIII detector at the BEPCII collider. The branching fractions are
determined to be and . Distributions of the angle
between the proton or anti-neutron and the beam direction are well
described by the form , and we find
for and
for . Our branching-fraction
results suggest a large phase angle between the strong and electromagnetic
amplitudes describing the decay.Comment: 16 pages, 13 figures, the 2nd version, submitted to PR
First observation of the M1 transition
Using a sample of 106 million \psi(3686) events collected with the BESIII
detector at the BEPCII storage ring, we have made the first measurement of the
M1 transition between the radially excited charmonium S-wave spin-triplet and
the radially excited S-wave spin-singlet states: \psi(3686)\to\gamma\eta_c(2S).
Analyses of the processes \psi(2S)\to \gamma\eta_c(2S) with \eta_c(2S)\to
\K_S^0 K\pi and K^+K^-\pi^0 gave an \eta_c(2S) signal with a statistical
significance of greater than 10 standard deviations under a wide range of
assumptions about the signal and background properties. The data are used to
obtain measurements of the \eta_c(2S) mass (M(\eta_c(2S))=3637.6\pm
2.9_\mathrm{stat}\pm 1.6_\mathrm{sys} MeV/c^2), width
(\Gamma(\eta_c(2S))=16.9\pm 6.4_\mathrm{stat}\pm 4.8_\mathrm{sys} MeV), and the
product branching fraction (\BR(\psi(3686)\to \gamma\eta_c(2S))\times
\BR(\eta_c(2S)\to K\bar K\pi) = (1.30\pm 0.20_\mathrm{stat}\pm
0.30_\mathrm{sys})\times 10^{-5}). Combining our result with a BaBar
measurement of \BR(\eta_c(2S)\to K\bar K \pi), we find the branching fraction
of the M1 transition to be \BR(\psi(3686)\to\gamma\eta_c(2S)) = (6.8\pm
1.1_\mathrm{stat}\pm 4.5_\mathrm{sys})\times 10^{-4}.Comment: 7 pages, 1 figure, 1 tabl
Measurement of the Cross Section between 600 and 900 MeV Using Initial State Radiation
We extract the cross section in the energy
range between 600 and 900 MeV, exploiting the method of initial state
radiation. A data set with an integrated luminosity of 2.93 fb taken at
a center-of-mass energy of 3.773 GeV with the BESIII detector at the BEPCII
collider is used. The cross section is measured with a systematic uncertainty
of 0.9%. We extract the pion form factor as well as the
contribution of the measured cross section to the leading order hadronic vacuum
polarization contribution to . We find this value to be
.Comment: 14 pages, 7 figures, accepted by PL
Study of
We present an analysis of the decay based
on data collected by the BESIII experiment at the resonance. Using
a nearly background-free sample of 18262 events, we measure the branching
fraction . For GeV/ the partial branching fraction is
. A partial wave analysis shows that the dominant
component is accompanied by an \emph{S}-wave contribution accounting for
of the total rate and that other components are
negligible. The parameters of the resonance and of the
form factors based on the spectroscopic pole dominance predictions are also
measured. We also present a measurement of the helicity
basis form factors in a model-independent way.Comment: 17 pages, 6 figure
Study of and and
We study the decays of and to the final states
and based on a single
baryon tag method using data samples of
and events collected with
the BESIII detector at the BEPCII collider. The decays to
are observed for the first time. The
measured branching fractions of and
are in good agreement with, and much
more precise, than the previously published results. The angular parameters for
these decays are also measured for the first time. The measured angular decay
parameter for , , is found to be negative, different to the other
decay processes in this measurement. In addition, the "12\% rule" and isospin
symmetry in the and and
systems are tested.Comment: 11 pages, 7 figures. This version is consistent with paper published
in Phys.Lett. B770 (2017) 217-22
Measurements of absolute hadronic branching fractions of baryon
Using of collisions recorded at
with the BESIII detector, we report first measurements
of absolute hadronic branching fractions of Cabibbo-favored decays of the
baryon with a double-tag technique. A global least-square
fitter is utilized to improve the measured precision. Among the measurements
for twelve decay modes, the branching fraction for
is determined to be
, where the first uncertainty is statistical and the
second is systematic. In addition, the measurements of the branching fractions
of the other eleven Cabbibo-favored hadronic decay modes are significantly
improved
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