19 research outputs found
Predictors of Refugees’ Ability to Pass the United States Citizenship Exam
Background: Passing the United States citizenship exam can be challenging for refugee populations for several reasons, including affordability of English classes, time restraints, medical stressors, and limited formal education. The purpose of this study was to examine factors that may influence a refugees’ ability to pass the citizenship exam, including English proficiency, education, employment, and completion of English as a Second Language (ESL) classes.
Methods: Refugee patients at the International Family Medicine Clinic (IFMC) in Central Virginia participated in a survey that assessed their levels of English proficiency and whether or not they had passed the citizenship exam. The survey included questions about gender, employment, country of origin, years of education, participation in English classes and barriers to attendance.
Results: Refugees who had a higher level of self-reported English proficiency and more years of formal education were more likely to pass the citizenship exam. Other factors such as age, employment, English classes, and gender did not affect participants’ ability to pass the exam.
Conclusion: Further research needs to identify successful models to help refugees obtain English fluency and assist them in passing the U.S. citizenship exam
Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data
<p>Abstract</p> <p>Background</p> <p>Microarray technology has become very popular for globally evaluating gene expression in biological samples. However, non-linear variation associated with the technology can make data interpretation unreliable. Therefore, methods to correct this kind of technical variation are critical. Here we consider a method to reduce this type of variation applied after three common procedures for processing microarray data: MAS 5.0, RMA, and dChip<sup>®</sup>.</p> <p>Results</p> <p>We commonly observe intensity-dependent technical variation between samples in a single microarray experiment. This is most common when MAS 5.0 is used to process probe level data, but we also see this type of technical variation with RMA and dChip<sup>® </sup>processed data. Datasets with unbalanced numbers of up and down regulated genes seem to be particularly susceptible to this type of intensity-dependent technical variation. Unbalanced gene regulation is common when studying cancer samples or genetically manipulated animal models and preservation of this biologically relevant information, while removing technical variation has not been well addressed in the literature. We propose a method based on using rank-invariant, endogenous transcripts as reference points for normalization (GRSN). While the use of rank-invariant transcripts has been described previously, we have added to this concept by the creation of a global rank-invariant set of transcripts used to generate a robust average reference that is used to normalize all samples within a dataset. The global rank-invariant set is selected in an iterative manner so as to preserve unbalanced gene expression. Moreover, our method works well as an overlay that can be applied to data already processed with other probe set summary methods. We demonstrate that this additional normalization step at the "probe set level" effectively corrects a specific type of technical variation that often distorts samples in datasets.</p> <p>Conclusion</p> <p>We have developed a simple post-processing tool to help detect and correct non-linear technical variation in microarray data and demonstrate how it can reduce technical variation and improve the results of downstream statistical gene selection and pathway identification methods.</p
Technological Advances to Address Current Issues in Entomology: 2020 Student Debates
The 2020 Student Debates of the Entomological Society of America (ESA) were live-streamed during the Virtual Annual Meeting to debate current, prominent entomological issues of interest to members. The Student Debates Subcommittee of the National ESA Student Affairs Committee coordinated the student efforts throughout the year and hosted the live event. This year, four unbiased introductory speakers provided background for each debate topic while four multi-university teams were each assigned a debate topic under the theme ‘Technological Advances to Address Current Issues in Entomology’. The two debate topics selected were as follows: 1) What is the best taxonomic approach to identify and classify insects? and 2) What is the best current technology to address the locust swarms worldwide? Unbiased introduction speakers and debate teams began preparing approximately six months before the live event. During the live event, teams shared their critical thinking and practiced communication skills by defending their positions on either taxonomical identification and classification of insects or managing the damaging outbreaks of locusts in crops
Design, synthesis, and antibacterial properties of dual-ligand inhibitors of acetyl-CoA carboxylase
There is an urgent demand for the development of new antibiotics due to the increase in drug-resistant pathogenic bacteria. A novel target is the multifunctional enzyme acetyl-CoA carboxylase (ACC), which catalyzes the first committed step in fatty acid synthesis and consists of two enzymes: biotin carboxylase and carboxyltransferase. Covalently attaching known inhibitors against these enzymes with saturated hydrocarbon linkers of different lengths generated dual-ligand inhibitors. Kinetic results revealed that the dual-ligands inhibited the ACC complex in the nanomolar range. Microbiology assays showed that the dual-ligand with a 15-carbon linker did not exhibit any antibacterial activity, while the dual-ligand with a 7-carbon linker displayed broad-spectrum antibacterial activity as well as a decreased susceptibility in the development of bacterial resistance. These results suggest that the properties of the linker are vital for antibacterial activity and show how inhibiting two different enzymes with the same compound increases the overall potency while also impeding the development of resistance
Visual Scapular Dyskinesis: Kinematics and Muscle Activity Alterations in Patients With Subacromial Impingement Syndrome
Objective: To characterize scapular kinematics and shoulder muscle activity in patients with subacromial impingement syndrome, with and without visually identified scapular dyskinesis.Design: Cross-sectional study.Setting: Laboratory.Participants: Participants with subacromial impingement syndrome (N=38) were visually classified using a scapular dyskinesis test with obvious scapular dyskinesis (n=19) or normal scapular motion (n=19).Interventions: Not applicable.Main Outcome Measures: An electromagnetic motion capture system measured 3-dimensional kinematics of the thorax, humerus, and scapula. Simultaneously, surface electromyography was used to measure muscle activity of the upper, middle, and lower trapezius; serratus anterior; and infraspinatus during ascending and descending phases of weighted shoulder flexion. Separate mixed-model analyses of variance for the ascending and descending phases of shoulder flexion compared kinematics and muscle activity between the 2 groups. Shoulder disability was assessed with the Pennsylvania Shoulder Score (Penn).Results: the group with obvious dyskinesis reported 6 points lower on Penn shoulder function (0-60 points), exhibited a main group effect of less scapular external rotation of 2.1 degrees during ascent and 2.5 degrees during descent, and had 12.0% higher upper trapezius muscle activity during ascent in the 30 to 60 interval.Conclusions: Patients with obvious dyskinesis and subacromial impingement syndrome have reduced scapular external rotation and increased upper trapezius muscle activity, along with a greater loss of shoulder function compared with those without dyskinesis. These biomechanical alterations can lead to or be caused by scapular dyskinesis. Future studies should determine if correction of these deficits will eliminate scapular dyskinesis and improve patient-rated shoulder use. (C) 2015 by the American Congress of Rehabilitation MedicineCoordenação de Aperfeiçoamento de Pessoal de NÃvel Superior (CAPES)Interprofessional Polytrauma and Traumatic Brain Injury Rehabilitation Research FellowshipVA Advanced Fellowships & Professional Development, Office of Academic Affiliations, Department of Veterans AffairsUniversidade Federal de São Paulo, Dept Med, Translat Med Program, São Paulo, BrazilAT Still Univ, Ctr Clin Outcomes Studies, Mesa, AZ 85206 USAMarshall Univ, Sch Kinesiol, Huntington, WV USAVirginia Commonwealth Univ, Dept Phys Therapy Clin Biomech, Orthoped & Sports Outcomes Res Lab, Richmond, VA USAUniv So Calif, Div Biokinesiol & Phys Therapy, Los Angeles, CA USAUniversidade Federal de São Paulo, Dept Med, Translat Med Program, São Paulo, BrazilWeb of Scienc
Design, Synthesis, and Antibacterial Properties of Dual-Ligand Inhibitors of Acetyl-CoA Carboxylase
There is an urgent demand for the
development of new antibiotics
due to the increase in drug-resistant pathogenic bacteria. A novel
target is the multifunctional enzyme acetyl-CoA carboxylase (ACC),
which catalyzes the first committed step in fatty acid synthesis and
consists of two enzymes: biotin carboxylase and carboxyltransferase.
Covalently attaching known inhibitors against these enzymes with saturated
hydrocarbon linkers of different lengths generated dual-ligand inhibitors.
Kinetic results revealed that the dual-ligands inhibited the ACC complex
in the nanomolar range. Microbiology assays showed that the dual-ligand
with a 15-carbon linker did not exhibit any antibacterial activity,
while the dual-ligand with a 7-carbon linker displayed broad-spectrum
antibacterial activity as well as a decreased susceptibility in the
development of bacterial resistance. These results suggest that the
properties of the linker are vital for antibacterial activity and
show how inhibiting two different enzymes with the same compound increases
the overall potency while also impeding the development of resistance
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Regulation of the Ca2+ Channel CaV1.2 Supports Spatial Memory and Its Flexibility and LTD.
Widespread release of norepinephrine (NE) throughout the forebrain fosters learning and memory via adrenergic receptor (AR) signaling, but the molecular mechanisms are largely unknown. The β2 AR and its downstream effectors, the trimeric stimulatory Gs-protein, adenylyl cyclase (AC), and the cAMP-dependent protein kinase A (PKA), form a unique signaling complex with the L-type Ca2+ channel (LTCC) CaV1.2. Phosphorylation of CaV1.2 by PKA on Ser1928 is required for the upregulation of Ca2+ influx on β2 AR stimulation and long-term potentiation induced by prolonged theta-tetanus (PTT-LTP) but not LTP induced by two 1-s-long 100-Hz tetani. However, the function of Ser1928 phosphorylation in vivo is unknown. Here, we show that S1928A knock-in (KI) mice of both sexes, which lack PTT-LTP, express deficiencies during initial consolidation of spatial memory. Especially striking is the effect of this mutation on cognitive flexibility as tested by reversal learning. Mechanistically, long-term depression (LTD) has been implicated in reversal learning. It is abrogated in male and female S1928A knock-in mice and by β2 AR antagonists and peptides that displace β2 AR from CaV1.2. This work identifies CaV1.2 as a critical molecular locus that regulates synaptic plasticity, spatial memory and its reversal, and LTD.SIGNIFICANCE STATEMENT We show that phosphorylation of the Ca2+ channel CaV1.2 on Ser1928 is important for consolidation of spatial memory and especially its reversal, and long-term depression (LTD). Identification of Ser1928 as critical for LTD and reversal learning supports the model that LTD underlies flexibility of reference memory
Crystal Structure of Carboxyltransferase from <i>Staphylococcus aureus</i> Bound to the Antibacterial Agent Moiramide B
The
dramatic increase in the prevalence of antibiotic-resistant
bacteria has necessitated a search for new antibacterial agents against
novel targets. Moiramide B is a natural product, broad-spectrum antibiotic
that inhibits the carboxyltransferase component of acetyl-CoA carboxylase,
which catalyzes the first committed step in fatty acid synthesis.
Herein, we report the 2.6 Ã… resolution crystal structure of moiramide
B bound to carboxyltransferase. An unanticipated but significant finding
was that moiramide B bound as the enol/enolate. Crystallographic studies
demonstrate that the (4<i>S</i>)-methyl succinimide moiety
interacts with the oxyanion holes of the enzyme, supporting the notion
that an anionic enolate is the active form of the antibacterial agent.
Structure–activity studies demonstrate that the unsaturated
fatty acid tail of moiramide B is needed only for entry into the bacterial
cell. These results will allow the design of new antibacterial agents
against the bacterial form of carboxyltransferase