Application of Molecular Typing Methods for Analysis of Strains of Rickettsiae of the Spotted Fever Group and Rabies Virus

50 strains of spotted fever group (SFG) rickettsiae and 36 lyssaviruses strains from the collection of Omsk Research Institute of Natural Focus Infections were identified and typed using the approaches of molecular biology, epidemiology and bioinformatics. The taxonomic status of the studied cultures of SFG rickettsiae was identified. Zonation of the Russian Federation territories according to the spread of SFG pathogenic rickettsiae in their hosts - ixodic ticks was carried out. Lyssaviruses distribution in the territory of Siberia was considered

Arctic and Arctic-like rabies viruses: distribution, phylogeny and evolutionary history

Forty-one newly sequenced isolates of Arctic and Arctic-like rabies viruses, were genetically compared to each other and to those available from GenBank. Four phylogenetic lineages of Arctic viruses were identified. Arctic-1 viruses circulate in Ontario, Arctic-2 viruses circulate in Siberia and Alaska, Arctic-3 viruses circulate circumpolarly, and a newly described lineage Arctic-4 circulates locally in Alaska. The oldest available isolates from Siberia (between 1950 and 1960) belong to the Arctic-2 and Arctic-3 lineages and share 98·6–99·2% N gene identity with contemporary viruses. Two lineages of Arctic-like viruses were identified in southern Asia and the Middle East (Arctic-like-1) and eastern Asia (Arctic-like-2). A time-scaled tree demonstrates that the time of the most recent common ancestor (TMRCA) of Arctic and Arctic-like viruses is dated between 1255 and 1786. Evolution of the Arctic viruses has occurred through a northerly spread. The Arctic-like-2 lineage diverged first, whereas Arctic viruses share a TMRCA with Arctic-like-1 viruses