Development of novel multiplex microsatellite polymerase chain reactions to enable high-throughput population genetic studies of Schistosoma haematobium

© 2015 Webster et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. The attached file is the published version of the article

Brewster-angle measurements of sea-surface reflectance using a high resolution spectroradiometer

This paper describes the design, construction and testing of a ship-borne spectroradiometer based on an imaging spectrograph and cooled CCD array with a wavelength range of 350-800 nm and 4 nm spectral sampling. The instrument had a minimum spectral acquisition time of 0.1 s, but in practice data were collected over periods of 10 s to allow averaging of wave effects. It was mounted on a ship's superstructure so that it viewed the sea surface from a height of several metres at the Brewster angle (53 degrees) through a linear polarizing filter. Comparison of sea-leaving spectra acquired with the polarizer oriented horizontally and vertically enabled estimation of the spectral composition of sky light reflected directly from the sea surface. A semi-empirical correction procedure was devised for retrieving water-leaving radiance spectra from these measurements while minimizing the influence of reflected sky light. Sea trials indicated that reflectance spectra obtained by this method were consistent with the results of radiance transfer modelling of case 2 waters with similar concentrations of chlorophyll and coloured dissolved organic matter. Surface reflectance signatures measured at three locations containing blooms of different phytoplankton species were easily discriminated and the instrument was sufficiently sensitive to detect solar-stimulated fluorescence from surface chlorophyll concentrations down to 1 mg m−3

Evolution of the eyes of vipers with and without infrared-sensing pit organs

We examined lens and brille transmittance, photoreceptors, visual pigments, and visual opsin gene sequences of viperid snakes with and without infrared-sensing pit organs. Ocular media transmittance is high in both groups. Contrary to previous reports, small as well as large single cones occur in pit vipers. Non-pit vipers differ from pit vipers in having a twotiered retina, but few taxa have been examined for this poorly understood feature. All vipers sampled express rh1, sws1 and lws visual opsin genes. Opsin spectral tuning varies but not in accordance with the presence/absence of pit organs, and not always as predicted from gene sequences. The visual opsin genes were generally under purifying selection, with positive selection at spectral tuning amino acids in RH1 and SWS1 opsins, and at retinal pocket stabilization sites in RH1 or LWS (and without substantial differences between pit and nonpit vipers). Lack of evidence for sensory trade-off between viperid eyes (in the aspects examined) and pit organs might be explained by the high degree of neural integration of vision and infrared detection; the latter representing an elaboration of an existing sense with addition of a novel sense organ, rather than involving the evolution of a wholly novel sensory system

Effect of intragastric acid stability of fat emulsions on gastric emptying, plasma lipid profile and postpradial satiety

Fat is often included in common foods as an emulsion of dispersed oil droplets to enhance the organoleptic quality and stability. The intragastric acid stability of emulsified fat may impact on gastric emptying, satiety and plasma lipid absorption. The aim of the present study was to investigate whether, compared with an acid-unstable emulsion, an acid-stable fat emulsion would empty from the stomach more slowly, cause more rapid plasma lipid absorption and cause greater satiety. Eleven healthy male volunteers received on two separate occasions 500 ml of 15% (w/w) [13C]palmitate-enriched olive oil-in-water emulsion meals which were either stable or unstable in the acid gastric environment. MRI was used to measure gastric emptying and the intragastric oil fraction of the meals. Blood sampling was used to measure plasma lipids and visual analogue scales were used to assess satiety. The acid-unstable fat emulsion broke and rapidly layered in the stomach. Gastric emptying of meal volume was slower for the acid-stable fat emulsion (P,0·0001; two-way ANOVA). The rate of energy delivery of fat from the stomach to the duodenum was not different up to t ¼ 110 min. The acid-stable emulsion induced increased fullness (P,0·05), decreased hunger (P,0·0002), decreased appetite (P,0·0001) and increased the concentration of palmitic acid tracer in the chylomicron fraction (P,0·04). This shows that it is possible to delay gastric emptying and increase satiety by stabilising the intragastric distribution of fat emulsions against the gastric acid environment. This could have implications for the design of novel foods

Ward's Hierarchical Clustering Method: Clustering Criterion and Agglomerative Algorithm

The Ward error sum of squares hierarchical clustering method has been very widely used since its first description by Ward in a 1963 publication. It has also been generalized in various ways. However there are different interpretations in the literature and there are different implementations of the Ward agglomerative algorithm in commonly used software systems, including differing expressions of the agglomerative criterion. Our survey work and case studies will be useful for all those involved in developing software for data analysis using Ward's hierarchical clustering method.Comment: 20 pages, 21 citations, 4 figure

Postgraduate researcher admissions report

This report presents a summary of the findings from a survey on PGR admissions practices in UK HEIs that was carried out as part of the Equity in Doctoral Education through Partnership and Innovation (EDEPI) programme. The survey was developed in partnership with the UK Council for Graduate Education (UKCGE) and was carried out by Shift Learning. It aimed to: target staff involved in PGR admissions to understand better the practices which may have led to the existing admissions gap; find examples of practice that support and enable inclusion at doctoral level; and highlight priority areas for improvement. The report sets out recommendations for groundwork and practical action to address under-representation of people from racially-minoritised groups in the doctoral population

The taxonomy and anatomy of rauisuchian archosaurs from the Late Triassic of Germany and Poland

The German Late Triassic archosaur Teratosaurus suevicus is a historically important taxon, being the first described rauisuchian. Unfortunately the holotype is a single element, a maxilla, which is poorly preserved and incomplete. We redescribe this maxilla and identify a single potential autapomorphy. The fragmentary type specimen complicates attempts to refer additional material to this taxon, and other unassociated archosaur and rauisuchian specimens from the Mittlerer Stubensandstein of Germany cannot be referred to T. suevicus with any degree of confidence. The stratigraphically older T. silesiacus, from the upper Carnian of Poland, is represented by a much more complete and better preserved specimen. Comparison of the maxillae of T. suevicus and T. silesiacus reveals that the two are distinct taxa, contra recent suggestions, but also that they do not share any synapomorphies or a unique combination of characters relative to Postosuchus kirkpatricki and other rauisuchians. Thus, the Polish material must be transferred to a new genus, Polonosuchus gen. nov. Both Polonosuchus and Teratosaurus are very similar to Postosuchus kirkpatricki, and the three taxa are likely closely related

Contemporary works from the University collection

Contemporary works from the University collection Catalogue of exhibition held at Fine Arts Gallery, University of Tasmania, 10-30 June, 1988 Works by Lisa Anderson, Barry Cleavin, Anne Connors, Adrienne Gaha, Elizabeth Gower, Ruth Johnstone, David Keeling