A Herschel [C II] Galactic plane survey II: CO-dark H2 in clouds

ABRIDGED: Context: HI and CO large scale surveys of the Milky Way trace the diffuse atomic clouds and the dense shielded regions of molecular hydrogen clouds. However, until recently, we have not had spectrally resolved C+ surveys to characterize the photon dominated interstellar medium, including, the H2 gas without C, the CO-dark H2, in a large sample of clouds. Aims: To use a sparse Galactic plane survey of the 1.9 THz [C II] spectral line from the Herschel Open Time Key Programme, Galactic Observations of Terahertz C+ (GOT C+), to characterize the H2 gas without CO in a statistically significant sample of clouds. Methods: We identify individual clouds in the inner Galaxy by fitting [CII] and CO isotopologue spectra along each line of sight. We combine these with HI spectra, along with excitation models and cloud models of C+, to determine the column densities and fractional mass of CO-dark H2 clouds. Results: We identify 1804 narrow velocity [CII] interstellar cloud components in different categories. About 840 are diffuse molecular clouds with no CO, 510 are transition clouds containing [CII] and 12CO, but no 13CO, and the remainder are dense molecular clouds containing 13CO emission. The CO-dark H2 clouds are concentrated between Galactic radii 3.5 to 7.5 kpc and the column density of the CO-dark H2 layer varies significantly from cloud-to-cloud with an average 9X10^(20) cm-2. These clouds contain a significant fraction of CO-dark H2 mass, varying from ~75% for diffuse molecular clouds to ~20% for dense molecular clouds. Conclusions: We find a significant fraction of the warm molecular ISM gas is invisible in HI and CO, but is detected in [CII]. The fraction of CO-dark H2 is greatest in the diffuse clouds and decreases with increasing total column density, and is lowest in the massive clouds.Comment: 21 pages, 19 figures, accepted for publication in A&A (2014

Ionized gas at the edge of the Central Molecular Zone

To determine the properties of the ionized gas at the edge of the CMZ near Sgr E we observed a small portion of the edge of the CMZ near Sgr E with spectrally resolved [C II] 158 micron and [N II] 205 micron fine structure lines at six positions with the GREAT instrument on SOFIA and in [C II] using Herschel HIFI on-the-fly strip maps. We use the [N II] spectra along with a radiative transfer model to calculate the electron density of the gas and the [C II] maps to illuminate the morphology of the ionized gas and model the column density of CO-dark H2. We detect two [C II] and [N II] velocity components, one along the line of sight to a CO molecular cloud at -207 km/s associated with Sgr E and the other at -174 km/s outside the edge of another CO cloud. From the [N II] emission we find that the average electron density is in the range of about 5 to 25 cm{-3} for these features. This electron density is much higher than that of the warm ionized medium in the disk. The column density of the CO-dark H$_2$ layer in the -207 km/s cloud is about 1-2X10{21} cm{-2} in agreement with theoretical models. The CMZ extends further out in Galactic radius by 7 to 14 pc in ionized gas than it does in molecular gas traced by CO. The edge of the CMZ likely contains dense hot ionized gas surrounding the neutral molecular material. The high fractional abundance of N+ and high electron density require an intense EUV field with a photon flux of order 1e6 to 1e7 photons cm{-2} s{-1}, and/or efficient proton charge exchange with nitrogen, at temperatures of order 1e4 K, and/or a large flux of X-rays. Sgr E is a region of massive star formation which are a potential sources of the EUV radiation that can ionize the gas. In addition X-ray sources and the diffuse X-ray emission in the CMZ are candidates for ionizing nitrogen.Comment: 12 pages, 9 figure

The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information

The Mammalian Phenotype (MP) Ontology enables robust annotation of mammalian phenotypes in the context of mutations, quantitative trait loci and strains that are used as models of human biology and disease. The MP Ontology supports different levels and richness of phenotypic knowledge and flexible annotations to individual genotypes. It continues to develop dynamically via collaborative input from research groups, mutagenesis consortia, and biological domain experts. The MP Ontology is currently used by the Mouse Genome Database and Rat Genome Database to represent phenotypic data

SWAS and Arecibo observations of H2O and OH in a diffuse cloud along the line-of-sight to W51

Observations of W51 with the Submillimeter Wave Astronomy Satellite (SWAS) have yielded the first detection of water vapor in a diffuse molecular cloud. The water vapor lies in a foreground cloud that gives rise to an absorption feature at an LSR velocity of 6 km/s. The inferred H2O column density is 2.5E+13 cm-2. Observations with the Arecibo radio telescope of hydroxyl molecules at ten positions in W51 imply an OH column density of 8E+13 cm-2 in the same diffuse cloud. The observed H2O/OH ratio of ~ 0.3 is significantly larger than an upper limit derived previously from ultraviolet observations of the similar diffuse molecular cloud lying in front of HD 154368. The observed variation in H2O/OH likely points to the presence in one or both of these clouds of a warm (T > 400) gas component in which neutral-neutral reactions are important sources of OH and/or H2O.Comment: 15 pages (AASTeX) including 4 (eps) figures. To appear in the Astrophysical Journa

Liver Resection for Primary Hepatic Neoplasms.

Subtotal hepatic resection was performed in 356 patients; 87 had primary hepatic malignancies, 108 had metastatic tumors, and 161 had benign lesions including 8 traumatic injuries. The global mortality was 4.2%. The experience has elucidated the role of subtotal hepatic resection both for benign and malignant neoplasms

[CII] observations of H2_2 molecular layers in transition clouds

We present the first results on the diffuse transition clouds observed in [CII] line emission at 158 microns (1.9 THz) towards Galactic longitudes near 340deg (5 LOSs) and 20deg (11 LOSs) as part of the GOT C+ survey. Out of the total 146 [CII] velocity components detected by profile fitting we identify 53 as diffuse molecular clouds with associated $^{12}$CO emission but without $^{13}$CO emission and characterized by A$_V$ < 5 mag. We estimate the fraction of the [CII] emission in the diffuse HI layer in each cloud and then determine the [CII] emitted from the molecular layers in the cloud. We show that the excess [CII] intensities detected in a few clouds is indicative of a thick H$_2$ layer around the CO core. The wide range of clouds in our sample with thin to thick H$_2$ layers suggests that these are at various evolutionary states characterized by the formation of H$_2$ and CO layers from HI and C$^+$, respectively. In about 30% of the clouds the H$_2$ column densities (''dark gas'') traced by the [CII] is 50% or more than that traced by $^{12}$CO emission. On the average about 25% of the total H$_2$ in these clouds is in an H$_2$ layer which is not traced by CO. We use the HI, [CII], and $^{12}$CO intensities in each cloud along with simple chemical models to obtain constraints on the FUV fields and cosmic ray ionization rates.Comment: To be published in HIFI A&A special editio