Sedimentation And Hydrodynamics of Whitianga Estuary

Appendix V (modelling movies - DVD) is held with the print copy of this thesis, available from the University of Waikato Library.Whitianga Estuary is a bayhead barrier type estuary located on the east of the Coromandel Peninsula, North Island, New Zealand. The catchment has undergone many land-use changes since pre-European settlement. In some areas of the catchment land-use has changed from native forest to grasslands to forestry and back to pasture. These changes in catchment land-use all contribute to increased sedimentation into the estuary. Development of the estuary itself has also occurred in recent times. Much growth has been focussed around the estuary due to Whitianga town-ship having a large boating community, and includes a 170 berth marina and wharf situated at the tidal inlet entrance to the estuary. These, and the extensive canal development engineering works can have substantial impacts on the sedimentation regime, and may modify tidal circulation, flushing, and sediment deposition within the estuary. The principle aim of this research is to assess hydrodynamics and sedimentation of the estuary for future management and development purposes, and also to model different scenarios in order to determine the most cost effective, and least obtrusive design for a proposed boat-ramp and approach channel near the marina. To determine sedimentation rates, sediment cores from four locations were collected to depths of 1 m. Coring locations were chosen based on preliminary model run results, selecting areas that appeared to be long-term sediment sinks of a stable nature. Cores were divided into 10 mm sections and prepared for 210Pb dating and heavy metal analysis, to make an assessment of the vertical sedimentation rates. Recent sedimentation rates were found to be as high as 9 mm/yr post-1950s and past sedimentation rates as high as 30 mm/yr pre-1950s. The use of heavy metal analysis for dating proved difficult as the background levels of the conservative elements used to normalise results varied, making the geochemical analysis approach inappropriate. As bathymetry is one of the most important aspects of modelling, a large amount of surveying was undertaken for this study. LiDAR, singlebeam data, and recent rectified aerial photographs were interpreted for the creation of a bathymetric grid file to be used for hydrodynamic modelling of the estuary. The 3DD numerical model was used to determine tidal flows and current velocities. From this initial hydrodynamic model a particle-tracking model was created to determine sediment transport pathways within the estuary. From the initial 20 m model it was then possible to create a number of nested model grids for the purpose of determining the best practice scenario for the creation of a proposed boat ramp and associated approach channel near the harbour entrance. Hydrodynamic results suggest that residual circulation in Whitianga Estuary is nearly in balance, with a low ebb tidal domination present. Particle tracking results suggest that sediment entrained and carried into and within the estuary will accumulate on the intertidal flats. Sediment transport modelling indicates that the impact of a proposed boat-ramp will result in sedimentation of the dredged approach channel due to reductions in residual and tidal velocities

Inadequate Parathyroid Response in Acute Pancreatitis

Abstract We studied nine consecutive hypocalcemic patients with acute pancreatitis to elucidate the mechanism of hypocalcemia. Mean serum ionized calcium, 0.97 mM, was below the normal mean of 1.16 mM (P \u3c 0.001). Seven of eight patients tested had normal parathyroid hormone levels. All responded to parenteral parathyroid extract by increasing serum ionized calcium and urinary cyclic AMP, indicating parathyroid-hormone-responsive target organs. Calcitonin and glucagon concentrations were increased above normal in some patients, but there was no relation with serum ionized calcium. Parenteral glucagon had no significant effect on serum ionized calcium or calcitonin concentrations. These findings suggest that neither glucagon nor calcitonin was primarily responsible for the hypocalcemia, which did not produce expected increases in serum parathyroid hormone concentrations. Relative parathyroid insufficiency may account for the persistent hypocalcemia frequently observed in patients with acute pancreatitis. (N Engl J Med 294:512–516, 1976

SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids

Kidney failure is frequently observed during and after COVID-19, but it remains elusive whether this is a direct effect of the virus. Here, we report that SARS-CoV-2 directly infects kidney cells and is associated with increased tubule-interstitial kidney fibrosis in patient autopsy samples. To study direct effects of the virus on the kidney independent of systemic effects of COVID-19, we infected human-induced pluripotent stem-cell-derived kidney organoids with SARS-CoV-2. Single-cell RNA sequencing indicated injury and dedifferentiation of infected cells with activation of profibrotic signaling pathways. Importantly, SARS-CoV-2 infection also led to increased collagen 1 protein expression in organoids. A SARS-CoV-2 protease inhibitor was able to ameliorate the infection of kidney cells by SARS-CoV-2. Our results suggest that SARS-CoV-2 can directly infect kidney cells and induce cell injury with subsequent fibrosis. These data could explain both acute kidney injury in COVID-19 patients and the development of chronic kidney disease in long COVID

Factors Associated with Revision Surgery after Internal Fixation of Hip Fractures

Background: Femoral neck fractures are associated with high rates of revision surgery after management with internal fixation. Using data from the Fixation using Alternative Implants for the Treatment of Hip fractures (FAITH) trial evaluating methods of internal fixation in patients with femoral neck fractures, we investigated associations between baseline and surgical factors and the need for revision surgery to promote healing, relieve pain, treat infection or improve function over 24 months postsurgery. Additionally, we investigated factors associated with (1) hardware removal and (2) implant exchange from cancellous screws (CS) or sliding hip screw (SHS) to total hip arthroplasty, hemiarthroplasty, or another internal fixation device. Methods: We identified 15 potential factors a priori that may be associated with revision surgery, 7 with hardware removal, and 14 with implant exchange. We used multivariable Cox proportional hazards analyses in our investigation. Results: Factors associated with increased risk of revision surgery included: female sex, [hazard ratio (HR) 1.79, 95% confidence interval (CI) 1.25-2.50; P = 0.001], higher body mass index (fo

Sex-specific survival of adult common eiders in Nova Scotia, Canada

Common eiders (Somateria mollissima) are large sea ducks with a circumpolar distribution and have high cultural significance to sport hunters and indigenous peoples in many countries. Their gregarious habits, including colonial breeding and forming large flocks during migration and winter, make eiders susceptible to environmental stressors during breeding and non-breeding seasons. Our objective was to assess whether low adult survivorship could be contributing to suspected local population declines in Nova Scotia, Canada. We banded molting male and breeding female common eiders along the marine coastline of Nova Scotia and recaptured them in later years. We found that from 1997 to 2011, when males and females were banded, male survival (S) was high (S = 0.92; 95% CI = 0.87–0.95), whereas female survival was approximately 10% lower (S = 0.83; 95% CI = 0.78–0.87) and at a level comparable to what has been reported in other regions of the world where eider populations are thought to be in decline. Recovery rates (f) of harvested male and female eiders were indistinguishable (f = 0.013; 95% CI = 0.010–0.016), suggesting that lower female survival is attributable to factors other than hunting. Supplementary analyses using a longer-term data set for females only (1978–2011) and including live recapture data indicated that female survival rates have not changed markedly during the past 40 years and that the emigration rate from colonies is low (∼6%). We conclude that to successfully conserve this population, sources of non-harvest female mortality should be investigated and used to develop targeted management solutions. We speculate that one of those sources of mortality is predation on females at breeding colonies, notably from eagles and mustelids. © 2016 The Wildlife Society