Проблемы технической оснащённости России для работы в условиях Арктики

Cytochrome c oxidase is a respiratory enzyme catalysing the energy-conserving reduction of molecular oxygen to water. The crystal structure of the ba(3)-cytochrome c oxidase from Thermus thermophilus has been determined to 2.4 Å resolution using multiple anomalous dispersion (MAD) phasing and led to the discovery of a novel subunit IIa. A structure-based sequence alignment of this phylogenetically very distant oxidase with the other structurally known cytochrome oxidases leads to the identification of sequence motifs and residues that seem to be indispensable for the function of the haem copper oxidases, e.g. a new electron transfer pathway leading directly from Cu(A) to Cu(B). Specific features of the ba(3)-oxidase include an extended oxygen input channel, which leads directly to the active site, the presence of only one oxygen atom (O(2–), OH(–) or H(2)O) as bridging ligand at the active site and the mainly hydrophobic character of the interactions that stabilize the electron transfer complex between this oxidase and its substrate cytochrome c. New aspects of the proton pumping mechanism could be identified

Предельные метрологические характеристики генераторов сигналов на основе прямого цифрового синтеза

Выпускная квалификационная работа 75 страниц, 24 рисунка, 26 таблиц, 16 источников, 4 приложения. Ключевые слова: генератор сигналов, метрологические характеристики, амплитуда, период, коэффициент гармоник. Объектами исследования являются характеристики гармонических колебаний: амплитуда, период и коэффициент гармоник. Цель работы – исследование метрологических характеристик генераторов сигналов на основе прямого цифрового синтеза. В ходе работы проводилось определение нестабильности амплитуды, нестабильности периода и коэффициента гармоник путем моделирования с помощью программного обеспечения для инженерных вычислений – Mathcad. В результате работы были получены зависимости, позволяющие оценить необходимый период дискретизации по заданной нестабильности амплитуды, нестабильности периодаFinal qualifying work is 75 pages, 24 figures, 26 tables, 16 sources, 4 of the annex. Keywords: signal generator, the metrological characteristics, amplitude, period, total harmonic distortion. The objects of study are the characteristics of harmonic vibrations: amplitude, period, and total harmonic distortion. The purpose is research of metrological characteristics signal generator based on direct digital synthesis. The work was carried out determining the amplitude of instability, instability period and harmonic distortion by simulation software for engineering calculations - Mathcad. As a result of the work were obtained according to assess the required sampling period for a given amplitude instability, instability period and harmonic distortion

Experimental procedure for the characterization of radiation damage in macromolecular crystals

A novel automatic procedure to determine the sensitivity of macromolecular crystals to radiation damage is presented. The information extracted from this procedure can be directly used for optimal planning of data collection or/and beamline calibration

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

RNA-binding proteins (RBPs) regulate RNA metabolism at multiple levels by affecting splicing of nascent transcripts, RNA folding, base modification, transport, localization, translation, and stability. Despite their central role in RNA function, the RNA-binding specificities of most RBPs remain unknown or incompletely defined. To address this, we have assembled a genome-scale collection of RBPs and their RNA-binding domains (RBDs) and assessed their specificities using high-through-put RNA-SELEX (HTR-SELEX). Approximately 70% of RBPs for which we obtained a motif bound to short linear sequenc-es, whereas similar to 30% preferred structured motifs folding into stem-loops. We also found that many RBPs can bind to multiple distinctly different motifs. Analysis of the matches of the motifs in human genomic sequences suggested novel roles for many RBPs. We found that three cytoplasmic proteins-ZC3H12A, ZC3H12B, and ZC3H12C-bound to motifs resembling the splice donor sequence, suggesting that these proteins are involved in degradation of cytoplasmic viral and/or unspliced transcripts. Structural analysis revealed that the RNA motif was not bound by the conventional C3H1 RNA-binding domain of ZC3H12B. Instead, the RNA motif was bound by the ZC3H12B's PilT N terminus (PIN) RNase domain, revealing a po-tential mechanism by which unconventional RBDs containing active sites or molecule-binding pockets could interact with short, structured RNA molecules. Our collection containing 145 high-resolution binding specificity models for 86 RBPs is the largest systematic resource for the analysis of human RBPs and will greatly facilitate future analysis of the various bi-ological roles of this important class of proteins.Peer reviewe