Physiological Correlates of Urbanization in a Desert Songbird

Rapid worldwide urbanization is creating novel environments to which animals must adapt, a topic of growing interest for biologists. Studies of how organisms are affected by cities historically centered on large-scale censusing of populations, but recent investigations have considered finer-scaled, urban-rural differences among individuals and species in their behavior, morphology, and physiology, specifically as they relate to urban stress. A number of factors (e.g., corticosterone (CORT)-related stress response) may contribute to the degree of stress experienced by animals living under urban versus natural conditions, but several physiological variables have yet to be considered together in a large-scale assessment. Here, in a widespread species of desert passerine (the house finch, Haemorhous mexicanus), we quantified variation in plasma oxidative stress, plasma concentrations of vitamins and carotenoids, and body-mass of males in three successive seasons (winter, spring, and late summer/early fall) along an urban-rural gradient in Phoenix, Arizona, USA. We found that degree of urbanization was: (1) negatively related to circulating vitamin A concentrations in winter, (2) positively correlated with body-mass during spring, and (3) negatively associated with plasma concentrations of two carotenoids: zeaxanthin (during breeding) and 3-hydroxy-echinenone (3HE) (during molting). The striking link between 3HE levels and urbanization is consistent with previous research showing that urban songbirds have lower carotenoid levels and faded plumage; our finding is the first to implicate specific effects on a metabolically derived carotenoid for coloration. The fact that we observed only season-specific links between urbanization and indicators of quality in finches suggests that (at least for these metrics) there are no strong, lasting urban pressures imposed on finch physiology over the year. Interestingly, we found that a metric of plasma oxidative stress (lipid peroxidation) was positively correlated with levels of two carotenoids (lutein during breeding and 3HE during molting), which is consistent with a prior study of ours showing that finches with redder plumage deposit higher levels of CORT in their feathers; taken together, our studies suggest complex associations between carotenoids and stres

Glacial-interglacial vegetation dynamics in South Eastern Africa coupled to sea surface temperature variations in the Western Indian Ocean

Glacial-interglacial fluctuations in the vegetation of South Africa might elucidate the climate system at the edge of the tropics between the Indian and Atlantic Oceans. However, vegetation records covering a full glacial cycle have only been published from the eastern South Atlantic. We present a pollen record of the marine core MD96-2048 retrieved by the Marion Dufresne from the Indian Ocean similar to 120 km south of the Limpopo River mouth. The sedimentation at the site is slow and continuous. The upper 6 m (spanning the past 342 Ka) have been analysed for pollen and spores at millennial resolution. The terrestrial pollen assemblages indicate that during interglacials, the vegetation of eastern South Africa and southern Mozambique largely consisted of evergreen and deciduous forests. During glacials open mountainous scrubland dominated. Montane forest with Podocarpus extended during humid periods was favoured by strong local insolation. Correlation with the sea surface temperature record of the same core indicates that the extension of mountainous scrubland primarily depends on sea surface temperatures of the Agulhas Current. Our record corroborates terrestrial evidence of the extension of open mountainous scrubland (including fynbos-like species of the high-altitude Grassland biome) for the last glacial as well as for other glacial periods of the past 300 Ka

Characterization of Susceptibility Artifacts in MR-thermometry PRFS-based during Laser Interstitial Thermal Therapy

Magnetic Resonance Thermometry (MRT) is demonstrating huge abilities to guide laser interstitial thermal therapy (LITT) in several organs, such as the brain. Among the methods to perform MRT, Proton Resonance Frequency (PRF) shift holds significant benefits, like tissue independence. Despite its potential, PRF shift-based MRT holds significant challenges affecting the accuracy of reconstructed temperature maps. In particular, susceptibility artifacts due to gas-bubble formation are an important source of error in temperature maps in MRT-guided LITT. This work presents the characterization of the susceptibility artifacts in MRT-guided LITT and the measurement of its size. LITT was performed in gelatin-based phantoms, at 5 W, 2 W, 1 W, and 0.5 W under MRI guidance with a 1.5 T clinical MRI scanner. Temperature images were obtained with a 3D EPI (Echo planar imaging) prototype sequence. Areas of temperature errors were defined as zones of negative temperature variation <-2 degrees C. Moreover, we have analyzed the artifact shape in sagittal, axial and coronal planes. The analysis demonstrates a double-lobe shape for the susceptibility artifact mainly distributed in the sagittal plane. Also, the higher laser power caused a bigger artifact area. Temperature errors of similar to 80 degrees C proved the necessity to avoid susceptibility artifact generation during MRT-guided LITT. The analysis of the influence of the laser power on the artifact has suggested that using low laser power (0.5 W) helps avoid this measurement error

Cluster over individual randomization: are study design choices appropriately justified? Review of a random sample of trials

Taljaard, M., Goldstein, C. E., Giraudeau, B., Nicholls, S. G., Carroll, K., Hey, S. P., … Weijer, C. (2020). Cluster over individual randomization: are study design choices appropriately justified? Review of a random sample of trials. Clinical Trials. Copyright © The Author(s), 2020. DOI: https://doi.org/10.1177/174077451989679

Treatment of chronic hepatitis C in patients unresponsive to interferon. Interest of re-treatment combining interferon induction therapy and ribavirin (a multicenter pilot study)

Aim About 45% of patients with chronic hepatitis C are unresponsive to the present reference treatment combining pegelated interferon plus ribavirin; before pegylated interferon was available the non-response rate was around 60%. This open multicenter pilot study, initiated before pegylated interferon became available, was designed to evaluate, in patients unresponsive to interferon monotherapy, the rate of biological and virological response and side-effects of the ribivirin- alpha 2b interferon combination. Methods The combination protocol was ribavirin (1 to 1.2 g/d) plus alpha 2b interferon at induction doses (9 MU/d the first week; 4.5 MU/d the eleven following weeks; 3 MU/2 days the 36 following weeks). Results Among the 27 included patients, 17 (63%) were viremia-negative (PCR) after 12 weeks of treatment, 9 (33%) were complete responders (undetectable viremia and normal transaminases) at the end of treatment (48 weeks) and of follow-up (72 weeks). Patients with non-1, non-4 genotypes who derived full benefit from this therapeutic strategy (6/7 (86%) were complete responders: 4/5 with genotype 3 and 2/2 with genotype 5). Quality-of-life was impaired during treatment, especially during the first 12 weeks of high-dose interferon therapy. Conclusion While waiting for new therapeutic possibilities, these good results suggest interferon induction at the beginning of treatment remains a valid option

Design effect in multicenter studies: gain or loss of power?

<p>Abstract</p> <p>Background</p> <p>In a multicenter trial, responses for subjects belonging to a common center are correlated. Such a clustering is usually assessed through the design effect, defined as a ratio of two variances. The aim of this work was to describe and understand situations where the design effect involves a gain or a loss of power.</p> <p>Methods</p> <p>We developed a design effect formula for a multicenter study aimed at testing the effect of a binary factor (which thus defines two groups) on a continuous outcome, and explored this design effect for several designs (from individually stratified randomized trials to cluster randomized trials, and for other designs such as matched pair designs or observational multicenter studies).</p> <p>Results</p> <p>The design effect depends on the intraclass correlation coefficient (ICC) (which assesses the correlation between data for two subjects from the same center) but also on a statistic <it>S</it>, which quantifies the heterogeneity of the group distributions among centers (thus the level of association between the binary factor and the center) and on the degree of global imbalance (the number of subjects are then different) between the two groups. This design effect may induce either a loss or a gain in power, depending on whether the <it>S </it>statistic is respectively higher or lower than 1.</p> <p>Conclusion</p> <p>We provided a global design effect formula applying for any multicenter study and allowing identifying factors – the ICC and the distribution of the group proportions among centers – that are associated with a gain or a loss of power in such studies.</p

Recent sedimentation of organic matter along the SE Atlantic Margin : A key for understanding deep offshore petroleum source rocks.

Classical views for the deposition of organic-rich sediments in deep-sea environments invoke two principal types of oceanographic and sedimentologic settings. The first is confined basins in which stratified oxygen depleted waters lead to anoxic preservation of organic matter in the water column and in underlying sediments (Demaison and Moore, 1980). The second is an open ocean setting where the episodic mass transfers due to slope sediment instability lead to the rapid burial of outer-shelf and upper slope-derived organic matter and its consequent preservation due to limited oxic or anoxic degradation (Stow, 1987). Other studies have shown, however, that organic matter in modern deep-sea sediments may occur in high amounts where oxygen is not significantly depleted (Pedersen and Calvert, 1990). Recent studies have demonstrated that highly biological productive areas, such as the upwelling zones associated to the Benguela Current in S-E Atlantic, may deliver sufficient quantity of organic material to (1) outbalance the degradative capacity of the water column and (2) sustain the formation of organic-rich sediments even in deep and oxygenated conditions (Bertrand et al., 2003). It appears that the S-E Atlantic margins provide a good example for revisiting the sedimentology of organic matter in deep water environments in the frame of the GDR Marges Continentales. This may have important implications for a better understanding of the distribution of ancient source rocks in deep offshore petroleum systems (Huc et al., 2001; Bertrand et al., 2003)

A step towards stereotactic navigation during pelvic surgery: 3D nerve topography

Background: Long-term morbidity after multimodal treatment for rectal cancer is suggested to be mainly made up by nerve-injury-related dysfunctions. Stereotactic navigation for rectal surgery was shown to be feasible and will be facilitated by highlighting structures at risk of iatrogenic damage. The aim of this study was to investigate the ability to make a 3D map of the pelvic nerves with magnetic resonance imaging (MRI). Methods: A systematic review was performed to identify a main positional reference for each pelvic nerve and plexus. The nerves were manually delineated in 20 volunteers who were scanned with a 3-T MRI. The nerve identifiability rate and the likelihood of nerve identification correctness were determined. Results: The analysis included 61 studies on pelvic nerve anatomy. A main positional reference was defined for each nerve. On MRI, the sacral nerves, the lumbosacral plexus, and the obturator nerve could be identified bilaterally in all volunteers. The sympathetic trunk could be identified in 19 of 20 volunteers bilaterally (95%). The superior hypogastric plexus, the hypogastric nerve, and the inferior hypogastric plexus could be identified bilaterally in 14 (70%), 16 (80%), and 14 (70%) of the 20 volunteers, respectively. The pudendal nerve could be identified in 17 (85%) volunteers on the right side and in 13 (65%) volunteers on the left side. The levator ani nerve could be identified in only a few volunteers. Except for the levator ani nerve, the radiologist and the anatomist agreed that the delineated nerve depicted the correct nerve in 100% of the cases. Conclusion: Pelvic nerves at risk of injury are usually visible on high-resolution MRI w

Novel Methodologies for Providing In Situ Data to HAB Early Warning Systems in the European Atlantic Area: The PRIMROSE Experience

Harmful algal blooms (HABs) cause harm to human health or hinder sustainable use of the marine environment in Blue Economy sectors. HABs are temporally and spatially variable and hence their mitigation is closely linked to effective early warning. The European Union (EU) Interreg Atlantic Area project “PRIMROSE”, Predicting Risk and Impact of Harmful Events on the Aquaculture Sector, was focused on the joint development of HAB early warning systems in different regions along the European Atlantic Area. Advancement of the existing HAB forecasting systems requires development of forecasting tools, improvements in data flow and processing, but also additional data inputs to assess the distribution of HAB species, especially in areas away from national monitoring stations, usually located near aquaculture sites. In this contribution, we review different novel technologies for acquiring HAB data and report on the experience gained in several novel local data collection exercises performed during the project. Demonstrations include the deployment of autonomous imaging flow cytometry (IFC) sensors near two aquaculture areas: a mooring in the Daoulas estuary in the Bay of Brest and pumping from a bay in the Shetland Islands to an inland IFC; and several drone deployments, both of Unmanned Aerial Vehicles (UAV) and of Autonomous Surface vehicles (ASVs). Additionally, we have reviewed sampling approaches potentially relevant for HAB early warning including protocols for opportunistic water sampling by coastguard agencies. Experiences in the determination of marine biotoxins in non-traditional vectors and how they could complement standard routine HAB monitoring are also considered.En prens