A Systematic Analysis of Metal and Metalloid Concentrations in Eight Zebrafish Recirculating Water Systems

Metals and metalloids are integral to biological processes and play key roles in physiology and metabolism. Nonetheless, overexposure to some metals or lack of others can lead to serious health consequences. In this study, eight zebrafish facilities collaborated to generate a multielement analysis of their centralized recirculating water systems. We report a first set of average concentrations for 46 elements detected in zebrafish facilities. Our results help to establish an initial baseline for trouble-shooting purposes, and in general for safe ranges of metal concentrations in recirculating water systems, supporting reproducible scientific research outcomes with zebrafish

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

The SIB Swiss Institute of Bioinformatics (www.isb-sib.ch) provides world-class bioinformatics databases, software tools, services and training to the international life science community in academia and industry. These solutions allow life scientists to turn the exponentially growing amount of data into knowledge. Here, we provide an overview of SIB's resources and competence areas, with a strong focus on curated databases and SIB's most popular and widely used resources. In particular, SIB's Bioinformatics resource portal ExPASy features over 150 resources, including UniProtKB/Swiss-Prot, ENZYME, PROSITE, neXtProt, STRING, UniCarbKB, SugarBindDB, SwissRegulon, EPD, arrayMap, Bgee, SWISS-MODEL Repository, OMA, OrthoDB and other databases, which are briefly described in this article

Emerging investigator series: mercury mobility and methylmercury formation in a contaminated agricultural flood plain: influence of flooding and manure addition

The fate and the methylation of mercury (Hg) in the terrestrial environment are still poorly understood and although the main drivers of release and methylation of mercury in soils are known (low redox potential and microbial carbon availability) their interactions are not well understood. This is of concern since many agriculturally used floodplains, where the recurring flooding and agricultural practices (e.g. manure amendments) may have an impact on the fate and the biomethylation of Hg, are at the same time Hg-contaminated. In this study, we modified and validated existing methods to extract and analyze methylmercury (MeHg) by HPLC-ICP-MS in soils and we assessed the Hg and MeHg concentrations in three fields situated in a Hg polluted agricultural floodplain. Further, we incubated the top soil from the three studied fields for 11 days under flooded conditions in presence or absence of 2 mass% of cow manure, a common agricultural amendment in the area. Total Hg and MeHg concentrations ranged from <limit of detection (LOD, 0.012 mg kg-1) to 28.2 mg kg-1 and from 1.2 to 7.8 μg kg-1 respectively. Hg was released to the soil solution after 12 hours with a maximum between day 2 and day 7. MeHg levels in the soil solution were <LOD although it was found in the soil before and after the incubation. The addition of cow manure to saturated soils led to an increase in the MeHg concentrations of the soil solid phase by up to fivefold to a maximum of 26.4 ± 1.1 μg kg-1 (n = 3). Our study demonstrates that the combination of low redox potential because of flooding with common agricultural practices such as the amendment of manures enhances the formation of toxic MeHg

Organo-mercury species in a polluted agricultural flood plain: Combining speciation methods and polymerase chain reaction to investigate pathways of contamination.

The analysis of organic mercury (Hg) species in polluted soils is a necessary tool to assess the environmental risk(s) of mercury in contaminated legacy sites. The artificial formation of monomethylmercury (MeHg) during soil extraction and/or analysis is a well-known limitation and is especially relevant in highly polluted areas where MeHg/Hg ratios are notoriously low. Although this has been known for almost 30 years, the thorough characterisation of artificial formation rates is rarely a part of the method development in scientific literature. Here we present the application of two separate procedures (inorganic Hg (iHg) spiking and double-spike isotope dilution analyses (DSIDA)) to determine and correct for artificial Hg methylation in MeHg-selective acid-leaching/organic solvent extraction procedure. Subsequently, we combined corrected MeHg and ethylmercury (EtHg) measurements with PCR amplification of hgcA genes to distinguish between naturally formed MeHg from primary deposited MeHg in soils from a legacy site in a Swiss mountain valley. We found the DSIDA procedure incompatible with the organomercury selective extraction method due to the quantitative removal of iHg. Methylation factors from iHg spiking were in the range of (0.0075 ± 0.0001%) and were consistent across soils and sediment matrices. Further, we suggest that MeHg was deposited and not formed in-situ in two out of three studied locations. Our line of evidence consists of 1) the concomitant detection of EtHg, 2) the elevated MeHg concentrations (up to 4.84 μg kg-1), and 3) the absence of hgcA genes at these locations. The combination of Hg speciation and methylation gene (hgcA) abundance analyses are tools suited to assess Hg pollution pathways at Hg legacy sites

Les textiles de la tombe La Tène ancienne d’Altrier (Luxembourg)

The early Iron Age textile of the tumulus of Altrier (LUX) reveal important results in terms of weaves, colours, burial costom and provenience