ZDHHC8 as a candidate gene for schizophrenia: Analysis of a putative functional intronic marker in case-control and family-based association studies

BACKGROUND: The chromosome 22q11 region is proposed as a major candidate locus for susceptibility genes to schizophrenia. Recently, the gene ZDHHC8 encoding a putative palmitoyltransferase at 22q11 was proposed to increase liability to schizophrenia based on both animal models and human association studies by significant over-transmission of allele rs175174A in female, but not male subjects with schizophrenia. METHODS: Given the genetic complexity of schizophrenia and the potential genetic heterogeneity in different populations, we examined rs175174 in 204 German proband-parent triads and in an independent case-control study (schizophrenic cases: n = 433; controls: n = 186). RESULTS: In the triads heterozygous parents transmitted allele G preferentially to females, and allele A to males (heterogeneity χ(2 )= 4.43; p = 0.035). The case-control sample provided no further evidence for overall or gender-specific effects regarding allele and genotype frequency distributions. CONCLUSION: The findings on rs175174 at ZDHHC8 are still far from being conclusive, but evidence for sexual dimorphism is moderate, and our data do not support a significant genetic contribution of rs175174 to the aetiopathogenesis of schizophrenia

Is FKBP5 a genetic marker of affective psychosis? A case control study and analysis of disease related traits

BACKGROUND: A dysregulation of the hypothalamic-pituitary-adrenal (HPA) axis has been proposed as an important pathogenic factor in depression. Genetic variants of FKBP5, a protein of the HPA system modulating the glucocorticoid receptor, have been reported to be genetically associated with improved response to medical treatment and an increase of depressive episodes. METHODS: We examined three single nucleotide polymorphisms (SNPs) in FKBP5, rs4713916 in the proposed promoter region, rs1360780 in the second intron and rs3800373 in the 3'-untranslated region (3'-UTR), in a case-control study of Caucasian origin (affective psychosis: n = 248; controls: n = 188) for genetic association and association with disease related traits. RESULTS: Allele and genotype frequencies of rs4713916, rs1360780 and rs3800373 were not significantly different between cases and controls. Two three-locus haplotypes, G-C-T and A-T-G, accounted for 86.2% in controls. Odds ratios were not increased between cases and controls, except the rare haplotype G-C-G (OR 6.81), representing 2.1% of cases and 0.3% of controls. The frequency of rs4713916AG in patients deviated from expected Hardy-Weinberg equilibrium, the genotype AA at rs4713916 in monopolar depression (P = 0.011), and the two-locus haplotype rs1360780T – rs3800373T in the total sample (overall P = 0.045) were nominally associated with longer continuance of disease. CONCLUSION: Our data do not support a significant genetic contribution of FKBP5 polymorphisms and haplotypes to affective psychosis, and the findings are inconclusive regarding their contribution to disease-related traits

Is Ankyrin a genetic risk factor for psychiatric phenotypes?

Background Genome wide association studies reported two single nucleotide polymorphisms in ANK3 (rs9804190 and rs10994336) as independent genetic risk factors for bipolar disorder. Another SNP in ANK3 (rs10761482) was associated with schizophrenia in a large European sample. Within the debate on common susceptibility genes for schizophrenia and bipolar disorder, we tried to investigate common findings by analyzing association of ANK3 with schizophrenia, bipolar disorder and unipolar depression. Methods We genotyped three single nucleotide polymorphisms (SNPs) in ANK3 (rs9804190, rs10994336, and rs10761482) in a case-control sample of German descent including 920 patients with schizophrenia, 400 with bipolar affective disorder, 220 patients with unipolar depression according to ICD 10 and 480 healthy controls. Sample was further differentiated according to Leonhard's classification featuring disease entities with specific combination of bipolar and psychotic syndromes. Results We found no association of rs9804190 and rs10994336 with bipolar disorder, unipolar depression or schizophrenia. In contrast to previous findings rs10761482 was associated with bipolar disorder (p = 0.015) but not with schizophrenia or unipolar depression. We observed no association with disease entities according to Leonhard's classification. Conclusion Our results support a specific genetic contribution of ANK3 to bipolar disorder though we failed to replicate findings for schizophrenia. We cannot confirm ANK3 as a common risk factor for different diseases

Systematic mutation analysis of KIAA0767 and KIAA1646 in chromosome 22q-linked periodic catatonia

BACKGROUND: Periodic catatonia is a familial subtype of schizophrenia characterized by hyperkinetic and akinetic episodes, followed by a catatonic residual syndrome. The phenotype has been evaluated in two independent genome-wide linkage scans with evidence for a major locus on chromosome 15q15, and a second independent locus on chromosome 22q(tel). METHODS: In the positional and brain-expressed candidate genes KIAA0767 and KIAA1646, we searched for variants in the complete exons and adjacent splice-junctions as well as in parts of the 5'- and 3'-untranslated regions by means of a systematic mutation screening in individuals from chromosome 22q-linked pedigrees. RESULTS: The mutation scan revealed 24 single nucleotide polymorphisms, among them two rare codon variants (KIAA0767: S159I; KIAA1646: V338G). However, both were neither found segregating with the disease in the respective pedigree nor found at a significant frequency in a case-control association sample. CONCLUSION: Starting from linkage signals at chromosome22q(tel )in periodic catatonia, we screened two positional brain-expressed candidate genes for genetic variation. Our study excludes genetic variations in the coding and putative promoter regions of KIAA0767 and KIAA1646 as causative factors for periodic catatonia

De novo mutations identified by exome sequencing implicate rare missense variants in SLC6A1 in schizophrenia

Schizophrenia is a highly polygenic disorder with important contributions from both common and rare risk alleles. We analyzed exome sequencing data for de novo variants (DNVs) in a new sample of 613 schizophrenia trios and combined this with published data to give a total of 3,444 trios. In this new data, loss-of-function (LoF) DNVs were significantly enriched among 3,471 LoF-intolerant genes, which supports previous findings. In the full dataset, genes associated with neurodevelopmental disorders (n = 159) were significantly enriched for LoF DNVs. Within these neurodevelopmental disorder genes, SLC6A1, which encodes a γ-aminobutyric acid transporter, was associated with missense-damaging DNVs. In 1,122 trios for which genome-wide common variant data were available, schizophrenia and bipolar disorder polygenic risk were significantly overtransmitted to probands. Probands carrying LoF or deletion DNVs in LoF-intolerant or neurodevelopmental disorder genes had significantly less overtransmission of schizophrenia polygenic risk than did non-carriers, which provides a second robust line of evidence that these DNVs increase liability to schizophrenia

Mapping genomic loci implicates genes and synaptic biology in schizophrenia

Schizophrenia has a heritability of 60-80%1, much of which is attributable to common risk alleles. Here, in a two-stage genome-wide association study of up to 76,755 individuals with schizophrenia and 243,649 control individuals, we report common variant associations at 287 distinct genomic loci. Associations were concentrated in genes that are expressed in excitatory and inhibitory neurons of the central nervous system, but not in other tissues or cell types. Using fine-mapping and functional genomic data, we identify 120 genes (106 protein-coding) that are likely to underpin associations at some of these loci, including 16 genes with credible causal non-synonymous or untranslated region variation. We also implicate fundamental processes related to neuronal function, including synaptic organization, differentiation and transmission. Fine-mapped candidates were enriched for genes associated with rare disruptive coding variants in people with schizophrenia, including the glutamate receptor subunit GRIN2A and transcription factor SP4, and were also enriched for genes implicated by such variants in neurodevelopmental disorders. We identify biological processes relevant to schizophrenia pathophysiology; show convergence of common and rare variant associations in schizophrenia and neurodevelopmental disorders; and provide a resource of prioritized genes and variants to advance mechanistic studies

Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors

Background Suicide is a leading cause of death worldwide, and nonfatal suicide attempts, which occur far more frequently, are a major source of disability and social and economic burden. Both have substantial genetic etiology, which is partially shared and partially distinct from that of related psychiatric disorders. Methods We conducted a genome-wide association study (GWAS) of 29,782 suicide attempt (SA) cases and 519,961 controls in the International Suicide Genetics Consortium (ISGC). The GWAS of SA was conditioned on psychiatric disorders using GWAS summary statistics via multitrait-based conditional and joint analysis, to remove genetic effects on SA mediated by psychiatric disorders. We investigated the shared and divergent genetic architectures of SA, psychiatric disorders, and other known risk factors. Results Two loci reached genome-wide significance for SA: the major histocompatibility complex and an intergenic locus on chromosome 7, the latter of which remained associated with SA after conditioning on psychiatric disorders and replicated in an independent cohort from the Million Veteran Program. This locus has been implicated in risk-taking behavior, smoking, and insomnia. SA showed strong genetic correlation with psychiatric disorders, particularly major depression, and also with smoking, pain, risk-taking behavior, sleep disturbances, lower educational attainment, reproductive traits, lower socioeconomic status, and poorer general health. After conditioning on psychiatric disorders, the genetic correlations between SA and psychiatric disorders decreased, whereas those with nonpsychiatric traits remained largely unchanged. Conclusions Our results identify a risk locus that contributes more strongly to SA than other phenotypes and suggest a shared underlying biology between SA and known risk factors that is not mediated by psychiatric disorders.Peer reviewe

Association and haplotype examination of two susceptibility genes DAOA and FKBP5 for the manic-depression, monopolar depression and cycloid psychosis

Im Rahmen dieser Studie sollte die Frage beantwortet werden, ob sich einzelne SNPs oder Haplotypen als biologische Marker affektiver Psychosen identifizieren lassen. Hierfür sollten Assoziations- und Haplotypuntersuchung an zwei Kandidatengenen, FKBP5 und G72 DAOA/G30, mit unterschiedlichen pathophysiologischen Theorien, durchgeführt werden. Das auf der Kortisolhypothese basierende Kandidatengen FKBP5 liegt auf dem Chromosom 6 p21 und stellt ein wichtiges Regulatorprotein für den Glukokortikoid- Rezeptor (GR) dar. In FKBP5 wurden drei SNPs mit einem schnelleren Ansprechen auf Antidepressiva assoziiert gefunden: rs4713916 in der vermuteten Promoterregion, rs1360780 im 2. Intron und rs3800373 im nicht translatiertem 3Ende (Binder et al. 2004). Die vorbeschriebenen Polymorphismen sollten in einem unabhängigen Kollektiv auf Assoziation mit affektiven Psychosen untersucht werden, um eine Rolle von FKBP5 bei der Ätiopathogenese affektiver Psychosen zu überprüfen oder einen Einfluss auf verschiedene Variable des Krankheitsverlaufs zu bestätigen. In unserer Studie mit 248 Fällen und 188 Kontrollen unterschieden sich die untersuchten SNPs in FKBP5, rs4713916, rs1360780 und rs3800373 in ihrer Verteilung nicht bei Erkrankten und Gesunden. Den einzigen signifikanten Hinweis für eine Assoziation mit affektiven Erkrankungen bot der Risikophaplotyp G-C-G mit einer Odds Ratio von 6,4, der jedoch nur bei 2,1% der Fälle vorkam. Auch zeigte sich kein Zusammenhang mit den untersuchten klinischen Parametern. Die Untersuchungsergebnisse können somit einen wesentlichen Beitrag von FKBP5 für die depressive Erkrankung nicht belegen. Es erscheint daher fraglich, ob Polymorphismen in FKBP5 als biologische Marker affektiver Psychosen dienen können. Das zweite Kandidatengen G72 DAOA /G30 war durch positive Kopplungsbefunde des chromosomalen Locus für die bipolare Störung und schizophrenen Psychosen identifiziert worden. Neuere Befunde lassen einen Einfluss auf das glutamaterge Transmittersystem vermuten (Chumakov et al. 2002). Das Genprodukt von G72, D-Amino-Oxidase (DAOA) fördert die Oxidation von D-Serine durch D-Amino-Oxidase (DAO), was zum Beinamen D-Amino-Oxidase-Aktivator (DAOA) führte. Da D-Serin ein wichtiger Aktivator des NMDA Glutamatrezeptors ist, könnte G72/DAOA einen wichtigen Faktor für die glutamatergen Signaltransduktion darstellen. Mehrfach wurde eine Assoziation von 69 Markern im Locus G72/G30 mit der bipolaren Depression aber auch schizophrenen Psychosen beschrieben (Detera-Wadleigh et al. 2006). In der Studie sollte eine mögliche Assoziation von SNPs in G72/G30 mit der Erkrankung überprüft und die vorbeschriebenen LD-Blöcke am 5Ende von G72 näher untersucht werden. Dafür wurden sieben SNPs, die sich über den chromosomalen Locus von G72/G30 verteilen, bei 429 Fällen mit affektiven und zykloiden Psychosen und 188 Kontrollen, untersucht. Durch die LD-Analyse der untersuchten SNPs konnte die Ausdehnung der vorbeschriebenen LD-Blöcke in G72 genauer definiert und rs9558575 dem 1. Block zugeordnet werden, der somit bis zum 5-Ende vom G72 reicht. Der SNP rs9558575 am 5- Ende vom G72 wurde erstmalig in dieser Studie untersucht. Trotz adäquater Power (80% bei α = 0,05) erreichte kein Einzelmarker Signifikanzniveau (Tabelle 17). Dennoch zeigten sich Hinweise für eine Beteiligung von G72/G30 am Erkrankungsrisiko, insbesondere für den SNP rs2391191 bei den zykloiden Psychosen. Darüber hinaus scheint der Risikohaplotyp rs2391191A / rs3916966C sowohl für die zykloiden Psychosen (p = 0,002), als auch für die Gesamtgruppe der Affektpsychosen (p = 0,017) ein geeigneter biologischer Marker zu sein. Die in der vorliegenden Studie gefundene Assoziation mit zykloiden Psychosen könnte dabei helfen, die Vorbefunde für G72/G30 als Risikogen sowohl für die bipolare Depression als auch schizophrenen Psychosen zu erklären, da die zykloiden Psychosen nach IDC10 beiden Krankheitsentitäten zugerechnet werden können.In this dissertation two susceptibility genes, FKPP5 and G72/DAOA for the manic depression and monopolar depression were examined by genotyping several single nucleotide polymorphisms (SNPs). In summary, our data do not support a significant genetic contribution of FKBP5 or G72/DAOA to the pathogenesis of affective psychosis in the analysed markers; they may play a role as a disease modificatory factors. FKBP5: A dysregulation of the hypothalamic-pituitary-adrenal (HPA) axis has been proposed as an important pathogenic factor in depression. Genetic variants of FKBP5, a protein of the HPA system modulating the glucocorticoid receptor, have been reported to be genetically associated with improved response to medical treatment and an increase of depressive episodes. We examined three single nucleotide polymorphisms (SNPs) in FKBP5, rs4713916 in the proposed promoter region, rs1360780 in the second intron and rs3800373 in the 3’-untranslated region (3’-UTR), in a case-control study of Caucasian origin (affective psychosis: n= 248; controls: n= 188) for genetic association and association with disease related traits. Allele and genotype frequencies of rs4713916, rs1360780 and rs3800373 were not significantly different between cases and controls. Odds ratios were not increased between cases and controls, except the rare haplotype G-C-G (OR 6.81), representing 2.1% of cases and 0.3% of controls. The frequency of rs4713916AG in patients deviated from expected Hardy-Weinberg equilibrium, the genotype AA at rs4713916 in monopolar depression (P= 0.011), and the two-locus haplotype rs1360780T - rs3800373T in the total sample (overall P= 0.045) were associated with short duration of disease. In summary, our data do not support a significant genetic contribution of FKBP5 to affective psychosis in the analysed markers, and the findings are inconclusive regarding putative risk haplotypes or association with disease-related traits. G72/DAOA: The chromosomal region 13q32-33 has been found to be linked with bipolar disorder and schizophrenia in several studies. After the description of two genes, G72 and G30, in this region by Chumakov et al 2002, association studies revealed evidence for an association of SNPs at G72/G30 with bipolar disorder, but the results remained heterogeneous with differing risk alleles and missing replication. We examined seven single nucleotide polymorphisms (SNPs) around G7/G30: rs3916966, rs1935058, rs2391191, rs1935062, rs947267, rs3918342, rs9558575, in a case-control study of Caucasian origin (affective psychosis: n= 248; controls: n= 188) for genetic association. Allele and genotype frequencies were not significantly different between cases and controls, no single marker reached statistical significance. We found different specific marker combinations associated with manic depression rs1935062, rs2391191, rs3916966 (overall P=0.022 and monopolar affective disorder, rs1935058, rs947267, rs2391191, rs3916966, rs9558575 (overall P= 0.036), but no well-defined risk haplotype. Our data revealed no clear-cut association with polymorphisms and haplotypes in G72 with disease and did not support a significant genetic contribution of G72 to the pathogenesis of affective psychosis

Is Ankyrin a specific genetic risk factor for psychiatric phenotypes?

Background: Genome wide association studies reported two single nucleotide polymorphisms in ANK3 (rs9804190 and rs10994336) as independent genetic risk factors for bipolar disorder. Another SNP in ANK3 (rs10761482) was associated with schizophrenia in a large European sample. Within the debate on common susceptibility genes for schizophrenia and bipolar disorder, we tried to investigate common findings by analyzing association of ANK3 with schizophrenia, bipolar disorder and unipolar depression. Methods: We genotyped three single nucleotide polymorphisms (SNPs) in ANK3 (rs9804190, rs10994336, and rs10761482) in a case-control sample of German descent including 920 patients with schizophrenia, 400 with bipolar affective disorder, 220 patients with unipolar depression according to ICD 10 and 480 healthy controls. Sample was further differentiated according to Leonhard’s classification featuring disease entities with specific combination of bipolar and psychotic syndromes. Results: We found no association of rs9804190 and rs10994336 with bipolar disorder, unipolar depression or schizophrenia. In contrast to previous findings rs10761482 was associated with bipolar disorder (p = 0.015) but not with schizophrenia or unipolar depression. We observed no association with disease entities according to Leonhard’s classification. Conclusion: Our results support a specific genetic contribution of ANK3 to bipolar disorder though we failed to replicate findings for schizophrenia. We cannot confirm ANK3 as a common risk factor for different diseases