Cardiac myoglobin deficit has evolved repeatedly in teleost fishes

Peer reviewedPublisher PD

Coexistence in neutral theories: interplay of criticality and mild local preferences

Neutral theories have played a crucial and revolutionary role in fields such as population genetics and biogeography. These theories are critical by definition, in the sense that the overall growth rate of each single allele/species/type vanishes. Thus each species in a neutral model sits at the edge between invasion and extinction, allowing for the coexistence of symmetric/neutral types. However, in finite systems, mono-dominated states are ineludibly reached in relatively short times owing to demographic fluctuations, thus leaving us with an unsatisfactory framework to rationalize empirically-observed long-term coexistence. Here, we scrutinize the effect of heterogeneity in quasi-neutral theories, in which there can be a local mild preference for some of the competing species at some sites, even if the overall species symmetry is maintained. As we show here, mild biases at a small fraction of locations suffice to induce overall robust and durable species coexistence, even in regions arbitrarily far apart from the biased locations. This result stems from the long-range nature of the underlying critical bulk dynamics and has a number of implications, for example, in conservation ecology as it suggests that constructing local specific "sanctuaries" for different competing species can result in global enhancement of biodiversity, even in regions arbitrarily distant from the protected refuges.Comment: Accepted for publication in Journal of Statistical Mechanics: Theory and Experimen

Software and methods for oligonucleotide and cDNA array data analysis.

Two HTML-based programs were developed to analyze and filter gene-expression data: 'Bullfrog' for Affymetrix oligonucleotide arrays and 'Spot' for custom cDNA arrays. The programs provide intuitive data-filtering tools through an easy-to-use interface. A background subtraction and normalization program for cDNA arrays was also built that provides an informative summary report with data-quality assessments. These programs are freeware to aid in the analysis of gene-expression results and facilitate the search for genes responsible for interesting biological processes and phenotypes

Understanding trade pathways to target biosecurity surveillance

Increasing trends in global trade make it extremely difficult to prevent the entry of all potential invasive species (IS). Establishing early detection strategies thus becomes an important part of the continuum used to reduce the introduction of invasive species. One part necessary to ensure the success of these strategies is the determination of priority survey areas based on invasion pressure. We used a pathway-centred conceptual model of pest invasion to address these questions: what role does global trade play in invasion pressure of plant ecosystems and how could an understanding of this role be used to enhance early detection strategies? We concluded that the relative level of invasion pressure for destination ecosystems can be influenced by the intensity of pathway usage (import volume and frequency), the number and type of pathways with a similar destination, and the number of different ecological regions that serve as the source for imports to the same destination. As these factors increase, pressure typically intensifies because of increasing a) propagule pressure, b) likelihood of transporting pests with higher intrinsic invasion potential, and c) likelihood of transporting pests into ecosystems with higher invasibility. We used maritime containerized imports of live plants into the contiguous U.S. as a case study to illustrate the practical implications of the model to determine hotspot areas of relative invasion pressure for agricultural and forest ecosystems (two ecosystems with high potential invasibility). Our results illustrated the importance of how a pathway-centred model could be used to highlight potential target areas for early detection strategies for IS. Many of the hotspots in agricultural and forest ecosystems were within major U.S. metropolitan areas. Invasion ecologists can utilize pathway-centred conceptual models to a) better understand the role of human-mediated pathways in pest establishment, b) enhance current methodologies for IS risk analysis, and c) develop strategies for IS early detection-rapid response programs

Curvature Perturbations From Stochastic Particle Production During Inflation

We calculate the curvature power spectrum sourced by spectator fields that are excited repeatedly and non-adiabatically during inflation. In the absence of detailed information of the nature of spectator field interactions, we consider an ensemble of models with intervals between the repeated interactions and interaction strengths drawn from simple probabilistic distributions. We show that the curvature power spectra of each member of the ensemble shows rich structure with many features, and there is a large variability between different realizations of the same ensemble. Such features can be probed by the cosmic microwave background (CMB) and large scale structure observations. They can also have implications for primordial black hole formation and CMB spectral distortions. The geometric random walk behavior of the spectator field allows us to calculate the ensemble-averaged power spectrum of curvature perturbations semi-analytically. For sufficiently large stochastic sourcing, the ensemble-averaged power spectrum shows a scale dependence arising from the time spent by modes outside the horizon during the period of particle production, in spite of there being no preferred scale in the underlying model. We find that the magnitude of the ensemble-averaged power spectrum overestimates the typical power spectra in the ensemble because the ensemble distribution of the power spectra is highly non-Gaussian with fat tails.Comment: 68 pages, 23 figure

Probing the Deep End of the Milky Way with New Oscillating Kepler Giants

The Kepler mission has been a success in both exoplanet search and stellar physics studies. Red giants have actually been quite a highlight in the Kepler scene. The Kepler long and almost continuous four-year observations allowed us to detect oscillations in more than 15,000 red giants targeted by the mission. However by looking at the power spectra of 45,000 stars classified as dwarfs according to the Q1-16 Kepler star properties catalog, we detected red-giant like oscillations in 850 stars. Even though this is a small addition to the known red-giant sample, these misclassified stars represent a goldmine for galactic archeology studies. Indeed they happen to be fainter (down to Kp~16) and more distant (d>10kpc) than the known red giants, opening the possibility to probe unknown regions of our Galaxy. The faintness of these red giants with detected oscillations is very promising for detecting acoustic modes in red giants observed with K2 and TESS. In this talk, I will present this new sample of red giants with their revised stellar parameters derived from asteroseismology. Then I will discuss about the distribution of their masses, distances, and evolutionary states compared to the previously known sample of red giants.Comment: 5 pages, 4 figures, Proceedings of the KASC9-TASC2 meetin

Magnetoelectric coupling on fused azulene oligomers

The global magnetic phase diagram for fused azulene oligomers is obtained by using a fermionic Hubbard model, which is an intermediate between the molecular Pariser-Parr-Pople empiric Hamiltonian and the spin-1/2 antiferromagnetic Heisenberg model. We employ the density matrix renormalization group (DMRG) approach to explore the ground state properties of azulene-like molecules as a function of the electronic correlation and the oligomer size. It is shown that, depending on the length of the oligomer, fused azulene transitions from a singlet (S=0) to a higher-spin (S=1,2) ground state. Near the quantum magnetic phase transition the electric dipole moment, present on fused azulene molecules, couples with the magnetic moment leading to a divergent magnetoelectric susceptibility at the boundary lines of the magnetic phase diagram. These spontaneous electric and magnetic polarizations, together with the magnetoelectric coupling between them, indeed corroborate that these fused azulene oligomers can be viewed as a purely organic multiferroic material, being a magnetoelectric molecule.Fil: Valentim, Alexandra. Universidade Estadual da Paraiba; Brasil. Universidade Federal de Minas Gerais; Brasil. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Garcia, Daniel Julio. Comisión Nacional de Energía Atómica. Gerencia del Área de Energía Nuclear. Instituto Balseiro. Archivo Histórico del Centro Atómico Bariloche e Instituto Balseiro | Universidad Nacional de Cuyo. Instituto Balseiro. Archivo Histórico del Centro Atómico Bariloche e Instituto Balseiro; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; ArgentinaFil: Plascak, J. A.. University of Georgia; Estados Unidos. Universidade Federal de Minas Gerais; Brasil. Universidade Estadual da Paraiba; Brasi

The Quantum Transverse Field Ising Model on an Infinite Tree from Matrix Product States

We give a generalization to an infinite tree geometry of Vidal's infinite time-evolving block decimation (iTEBD) algorithm for simulating an infinite line of quantum spins. We numerically investigate the quantum Ising model in a transverse field on the Bethe lattice using the Matrix Product State ansatz. We observe a second order phase transition, with certain key differences from the transverse field Ising model on an infinite spin chain. We also investigate a transverse field Ising model with a specific longitudinal field. When the transverse field is turned off, this model has a highly degenerate ground state as opposed to the pure Ising model whose ground state is only doubly degenerate.Comment: 28 pages, 23 figures, PDFlate