Integrating T-cell epitope annotations with sequence and structural information using DAS

Immunoinformatics is an emerging new field that benefits from computational analyses and tools that facilitate the understanding of the immune system. A large number of immunoinformatics resources such as immune-related databases and analysis software are available through the World Wide Web for the benefit of the research community. However, immunoinformatics developments have sometimes remained isolated from mainstream bioinformatics. Therefore, there is clearly a need for integration, which will empower the exchange of data and annotations within the scientific community in a quick and efficient fashion. Here, we have chosen the Distributed Annotation System (DAS), for integrating in house annotations on experimental and predicted HLA I-restriction elements of CD8 T-cell epitopes with sequence and structural information

Dependencia al ejercicio físico e indicadores del estado de ánimo en deportistas universitarios

El objetivo de este estudio fue conocer la prevalencia de la dependenciaal ejercicio físico en deportistas universitarios; analizar las diferenciasen función del sexo, modalidad deportiva y tiempo de entrenamiento.Además, analizar su relación y sensibilidad con los estados de ánimo. Participaron255 estudiantes (212 hombres y 43 mujeres) con edades comprendidasentre los 18 y 43 años (M = 21,25; DT = 4,28). Se administró la versiónespañola de la “Escala de Dependencia del Ejercicio- Revisada” (EDS-R;Sicilia y González, 2011) y el Profile of Mood States (POMS; McNair,Lorr y Droppleman, 1971). Los resultados mostraron una dependencia alejercicio físico representada en un 6% de los participantes del estudio, sindiferencias estadísticamente significativas en función del sexo o modalidaddeportiva. En cuanto al tiempo de entrenamiento sí aparecieron diferencias,siendo los que presentaban alta dedicación los que presentaban mayoressíntomas de dependencia al ejercicio físico, frente a los que presentaban unadedicación saludable. La dependencia al ejercicio se relacionó con un perfildel estado de ánimo de tensión, depresión, cólera, fatiga y debilidad. Losresultados han permitido identificar características del proceso de dependenciadel ejercicio e indicadores psicológicos que permiten detectar signosdel trastorno, mediante la evaluación psicológica durante los períodos deentrenamiento, para prevenir el desarrollo completo del problema

Estimation of the road dust contribution in the urban aerosol

The urban area of Madrid (Spain), as in many other cities worldwide, is characterized by poor ambient air quality. Previous studies in the area have pointed out traffic as the main source of fine particles, while dust resuspension was found to be responsible for elevated levels of coarse particles (Querol et al, 2004). Street washing is one of the methods that might reduce the dust resuspension. The aim of this study was to quantify the contribution of road dust to particulate matter and evaluate the effects of street washing on the strength of resuspensio

Influence of gaseous pollutants and their synergistic effects on the aging of reflector materials for concentrating solar thermal technologies

ABSTRACT: Concentrating solar thermal technologies have experienced an important boost in the last few years. Besides the production of electricity, they are particularly useful for the supply of industrial process heat. The industrial atmospheres affecting these solar plants typically contain gaseous pollutants that are likely to promote corrosion on the components of the solar facility, specifically solar reflectors, thereby compromising their optimal performance and the overall system efficiency. Seven accelerated aging tests were designed to study the effects of three air pollutants (H2S, SO2 and NO2) on the durability of two commercially available reflector types (silvered glass and aluminum), both in single-gas tests and in multicomponent gas mixtures. Additionally, the same material types were exposed outdoors at five representative polluted sites, including industrial, urban and coastal environments. Reflectance and optical microscope monitoring corroborated which degree of corrosion was developed on a specific type of reflector in the different tests with gaseous pollutants, as well as the synergistic effects of gas combinations. For example, tests with sulfur were harmful for silvered-glass reflectors (up to a total of 16 corrosion spots), whereas aluminum was particularly affected by tests with NO2 (numerous micro spots of around 50 pm size). Moreover, comparisons of the corrosion patterns found in accelerated-aging and outdoor exposures revealed which laboratory test reproduced the different real polluted atmospheres in the most realistic way, which is the main goal of this work. For instance, the degradation found at Site 2 was reproduced by Test NO2+SO2, with an acceleration factor of 27.info:eu-repo/semantics/publishedVersio

Non-linear models for black carbon exposure modelling using air pollution datasets

Black carbon (BC) is a product of incomplete combustion, present in urban aerosols and sourcing mainly from road traffic. Epidemiological evidence reports positive associations between BC and cardiovascular and respiratory disease. Despite this, BC is currently not regulated by the EU Air Quality Directive, and as a result BC data are not available in urban areas from reference air quality monitoring networks in many countries. To fill this gap, a machine learning approach is proposed to develop a BC proxy using air pollution datasets as an input. The proposed BC proxy is based on two machine learning models, support vector regression (SVR) and random forest (RF), using observations of particle mass and number concentrations (N), gaseous pollutants and meteorological variables as the input. Experimental data were collected from a reference station in Barcelona (Spain) over a 2 year period (2018-2019). Two months of additional data were available from a second urban site in Barcelona, for model validation. BC concentrations estimated by SVR showed a high degree of correlation with the measured BC concentrations (R-2 = 0.828) with a relatively low error (RMSE = 0.48 mu g/m3). Model performance was dependent on seasonality and time of the day, due to the influence of new particle formation events. When validated at the second station, performance indicators decreased (R-2 = 0.633; RMSE = 1.19 mu g/m(3)) due to the lack of N data and PM2.5 and the smaller size of the dataset (2 months). New particle formation events critically impacted model performance, suggesting that its application would be optimal in environments where traffic is the main source of ultrafine particles. Due to its flexibility, it is concluded that the model can act as a BC proxy, even based on EU-regulatory air quality parameters only, to complement experimental measurements for exposure assessment in urban areas.Peer reviewe

Thermodynamic analysis of the binding of 5-fluoro-2'-deoxyuridine 5'-monophosphate to thymidylate synthase over a range of temperatures

The binding of 5-fluoro-2'-deoxyuridine 5'-monophosphate (FdUMP) to Lactobacillus casei recombinant thymidylate synthase has been studied by isothermal titration microcalorimetry at pH 7.1 over the temperature range 16-35 degrees C. Calorimetric measurements in various buffer systems with different heats of ionization suggest that a proton uptake is involved in the binding process of the nucleotide. In the temperature range investigated, the mol protons bound/mol nucleotide increases as the temperature decreases. A model of two equal and independent sites fits well with the binding isotherms for thymidylate synthase. The binding constants, the changes in Gibbs energy, enthalpy, and entropy/site for FdUMP binding were calculated at each temperature. The results show that the binding is driven by both enthalpy and entropy contributions in the range 16-35 degrees C. The enthalpy changes become more negative as the temperature increases, with delta Cp = -170 +/- 20 J.K-1.(mol FdUMP bound)-1. The behavior of the system supports the observation that FdUMP binds to thymidylate synthase without producing profound conformational changes in the protein dimer

Evolution of innovation policy in Emilia-Romagna and Valencia: Similar reality, similar results?

This is an author's accepted manuscript of an article published in: “European Planning Studies"; Volume 22, Issue 11, 2014; copyright Taylor & Francis; available online at: http://dx.doi.org/10.1080/09654313.2013.831398[EN] This paper examines the evolution of regional innovation policy in Emilia-Romagna and Valencia, two regions with similar economic features that implemented close innovation policies in the 1970s and 1980s. We investigate whether their similarities have led to parallel targets, policy tools and governance developments. We show that innovation policy in both regions suffered from the effects of privatization, budget constraints and changes to manufacturing during the 1990s and we highlight the consequences. Although Emilia-Romagna experienced deeper changes to its innovation policy, privatizations and/or the replacement of public funds promoted commercial approaches and induced market failures in both regions. The worst effects of these policies were the implementation of less-risky innovation projects, the shift towards extraregional projects and markets, and the favouring of large firms.López Estornell, M.; Barberá Tomás, JD.; Garcia Reche, A.; Mas Verdú, F. (2013). Evolution of innovation policy in Emilia-Romagna and Valencia: Similar reality, similar results?. European Planning Studies. 22(11):2287-2304. doi:10.1080/09654313.2013.831398S22872304221

Insights into the single-particle composition, size, mixing state, and aspect ratio of freshly emitted mineral dust from field measurements in the Moroccan Sahara using electron microscopy

The chemical and morphological properties of mineral dust aerosols emitted by wind erosion from arid and semi-arid regions influence climate, ocean, and land ecosystems; air quality; and multiple socio-economic sectors. However, there is an incomplete understanding of the emitted dust particle size distribution (PSD) in terms of its constituent minerals that typically result from the fragmentation of soil aggregates during wind erosion. The emitted dust PSD affects the duration of particle transport and thus each mineral's global distribution, along with its specific effect upon climate. This lack of understanding is largely due to the scarcity of relevant in situ measurements in dust sources. To advance our understanding of the physicochemical properties of the emitted dust PSD, we present insights into the elemental composition and morphology of individual dust particles collected during the FRontiers in dust minerAloGical coMposition and its Effects upoN climaTe (FRAGMENT) field campaign in the Moroccan Sahara in September 2019. We analyzed more than 300 000 freshly emitted individual particles by performing offline analysis in the laboratory using scanning electron microscopy (SEM) coupled with energy-dispersive X-ray spectrometry (EDX). Eight major particle-type classes were identified with clay minerals making up the majority of the analyzed particles both by number and mass, followed by quartz, whereas carbonates and feldspar contributed to a lesser extent. We provide an exhaustive analysis of the PSD and potential mixing state of different particle types, focusing largely on iron-rich (Fe oxide-hydroxides) and feldspar particles, which are key to the effects of dust upon radiation and clouds, respectively. Nearly pure or externally mixed Fe oxide-hydroxides are present mostly in diameters smaller than 2 µm, with the highest fraction below 1 µm at about 3.75 % abundance by mass. Fe oxide-hydroxides tend to be increasingly internally mixed with other minerals, especially clays, as particle size increases; i.e., the volume fraction of Fe oxide-hydroxides in aggregates decreases with particle size. Pure (externally mixed) feldspar represented 3.2 % of all the particles by mass, of which we estimated about a 10th to be K-feldspar. The externally mixed total feldspar and K-feldspar abundances are relatively invariant with particle size, in contrast to the increasing abundance of feldspar-like (internally mixed) aggregates with particle size with mass fractions ranging from 5 % to 18 %. We also found that overall the median aspect ratio is rather constant across particle size and mineral groups, although we obtain slightly higher aspect ratios for internally mixed particles. The detailed information on the composition of freshly emitted individual dust particles and quantitative analysis of their mixing state presented here can be used to constrain climate models including mineral species in their representation of the dust cycle.</p