Impact of atmospheric deposition on the metabolism of coastal microbial communities

11 páginas, 3 tablas, 5 figurasThe impact of rain water collected at marine, urban and rural sites on coastal phytoplankton biomass, primary production and community composition as well as the effect on microbial plankton metabolism was studied in 3 microcosm experiments conducted under contrasting spring, autumn and winter conditions. The measured responses were highly variable. Rainwater additions increased chlorophyll a (Chl a) concentration (5–68% difference between rainwater treatments relative to the control) in all experiments and reduced or stimulated primary production (PP) depending on the treatment and the experiment (from −10 to +169% relative to the control). Autotrophic stimulation was highest in spring, probably related to the low initial natural nutrient concentrations. Under winter nutrient replete conditions, rainwater inputs changed the phytoplankton community although this change did not promote increases in primary production. Enhancement of net autotrophy (increase of net oxygen production up to 227%) after rainwater inputs were only found during the period of low nutrient availability. Inputs of dissolved organic nitrogen (DON) explained a large fraction of the variability in the response of PP, Chl a, community respiration (CR) and net community production (NCP). Our results suggest that differences in the initial environmental conditions (i.e. nutrient availability), rainwater composition and the ability of the present autotrophic communities to utilize the new nutrients result in substantial changes in the microbial responses and associated biologically-mediated carbon fluxes. As atmospheric nutrient inputs into coastal oceans are increasing rapidly, our results help to understand the effects of different inputs on the metabolism of distinct microbial communitiesThis research was supported by the Galician Government (Xunta de Galicia) through the grants 07MMA002402PR (IMAN) and PGIDIT06PXIB312222PR (AddEx). S.M-G. and E.E.G-M. were funded by F.P.U. fellowships and E.T. by a Ramón y Cajal contract of the Spanish Ministry of Science and InnovationPeer reviewe

Both respiration and photosynthesis determine the scaling of plankton metabolism in the oligotrophic ocean

Despite its importance to ocean–climate interactions, the metabolic state of the oligotrophic ocean has remained controversial for >15 years. Positions in the debate are that it is either hetero- or autotrophic, which suggests either substantial unaccounted for organic matter inputs, or that all available photosynthesis (P) estimations (including 14 C) are biased. Here we show the existence of systematic differences in the metabolic state of the North (heterotrophic) and South (autotrophic) Atlantic oligotrophic gyres, resulting from differences in both P and respiration (R). The oligotrophic ocean is neither auto- nor heterotrophic, but functionally diverse. Our results show that the scaling of plankton metabolism by generalized P:R relationships that has sustained the debate is biased, and indicate that the variability of R, and not only of P, needs to be considered in regional estimations of the ocean’s metabolic state.Ministerio de Ciencia e Innovación | Ref. CTM2009-0S069-E/MARMinisterio de Ciencia e Innovación | Ref. CTM2011-2961

Satellite estimates of net community production indicate predominance of net autotrophy in the Atlantic Ocean

There is ongoing debate as to whether the oligotrophic ocean is predominantly net autotrophic and acts as a CO2 sink, or net heterotrophic and therefore acts as a CO2 source to the atmosphere. This quantification is challenging, both spatially and temporally, due to the sparseness of measurements. There has been a concerted effort to derive accurate estimates of phytoplankton photosynthesis and primary production from satellite data to fill these gaps; however there have been few satellite estimates of net community production (NCP). In this paper, we compare a number of empirical approaches to estimate NCP from satellite data with in vitro measurements of changes in dissolved O2 concentration at 295 stations in the N and S Atlantic Ocean (including the Antarctic), Greenland and Mediterranean Seas. Algorithms based on power laws between NCP and particulate organic carbon production (POC) derived from 14C uptake tend to overestimate NCP at negative values and underestimate at positive values. An algorithm that includes sea surface temperature (SST) in the power function of NCP and 14C POC has the lowest bias and root-mean square error compared with in vitro measured NCP and is the most accurate algorithm for the Atlantic Ocean. Nearly a 13 year time series of NCP was generated using this algorithm with SeaWiFS data to assess changes over time in different regions and in relation to climate variability. The North Atlantic subtropical and tropical Gyres (NATL) were predominantly net autotrophic from 1998 to 2010 except for boreal autumn/winter, suggesting that the northern hemisphere has remained a net sink for CO2 during this period. The South Atlantic sub-tropical Gyre (SATL) fluctuated from being net autotrophic in austral spring-summer, to net heterotrophic in austral autumn–winter. Recent decadal trends suggest that the SATL is becoming more of a CO2 source. Over the Atlantic basin, the percentage of satellite pixels with negative NCP was 27%, with the largest contributions from the NATL and SATL during boreal and austral autumn–winter, respectively. Variations in NCP in the northern and southern hemispheres were correlated with climate indices. Negative correlations between NCP and the multivariate ENSO index (MEI) occurred in the SATL, which explained up to 60% of the variability in NCP. Similarly there was a negative correlation between NCP and the North Atlantic Oscillation (NAO) in the Southern Sub-Tropical Convergence Zone (SSTC), which explained 90% of the variability. There were also positive correlations with NAO in the Canary Current Coastal Upwelling (CNRY) and Western Tropical Atlantic (WTRA) which explained 80% and 60% of the variability in each province, respectively. MEI and NAO seem to play a role in modifying phases of net autotrophy and heterotrophy in the Atlantic Ocean.Chinese State Scholarship Fund | Ref. 201206310058Ministerio de Ciencia e Innovación | Ref. CTM2011-2961

Plankton community respiration and bacterial metabolism in a North Atlantic Shelf Sea during spring bloom development (April 2015)

Spring phytoplankton blooms are important events in Shelf Sea pelagic systems as the increase in carbon production results in increased food availability for higher trophic levels and the export of carbon to deeper waters and the sea-floor. It is usually accepted that the increase in phytoplankton abundance and production is followed by an increase in plankton respiration. However, this expectation is derived from field studies with a low temporal sampling resolution (5–15 days). In this study we have measured the time course of plankton abundance, gross primary production, plankton community respiration, respiration of the plankton size classes (>0.8 µm and 0.2–0.8 µm) and bacterial production at ≤5 day intervals during April 2015 in order to examine the phasing of plankton autotrophic and heterotrophic processes. Euphotic depth-integrated plankton community respiration increased five-fold (from 22 ± 4 mmol O2 m−2 d−1 on 4th April to 119 ± 4 mmol O2 m−2 d−1 on 15th April) at the same time as gross primary production also increased five-fold, (from 114 ± 5 to 613 ± 28 mmol C m−2 d−1). Bacterial production began to increase during the development of the bloom, but did not reach its maximum until 5 days after the peak in primary production and plankton respiration. The increase in plankton community respiration was driven by an increase in the respiration attributable to the >0.8 µm size fraction of the plankton community (which would include phytoplankton, microzooplankton and particle attached bacteria). Euphotic depth-integrated respiration of the 0.2–0.8 µm size fraction (predominantly free living bacteria) decreased and then remained relatively constant (16 ± 3 – 11 ± 1 mmol O2 m−2 d−1) between the first day of sampling (4th April) and the days following the peak in chlorophyll-a (20th and 25th April). Recent locally synthesized organic carbon was more than sufficient to fulfil the bacterial carbon requirement in the euphotic zone during this productive period. Changes in bacterial growth efficiencies (BGE, the ratio of bacterial production to bacterial carbon demand) were driven by changes in bacterial production rates increasing from 0.8 µm during the development of the spring bloom, followed 5 days later by a peak in bacterial production. In addition, the size fractionated respiration rates and high growth efficiencies suggest that free living bacteria are not the major producers of CO2 before, during and a few days after this shelf sea spring phytoplankton bloom.The Leverhulme Trust | Ref. RPG-2017-089UK Natural Environment Research Council (NERC) | Ref. NE/K00168X/1UK Natural Environment Research Council (NERC) | Ref. NE/ K001884/1UK Natural Environment Research Council (NERC) | Ref. NE/K002058/1UK Natural Environment Research Council (NERC) | Ref. NE/K001701/

The allometry of the smallest: superlinear scaling of microbial metabolic rates in the Atlantic Ocean

Prokaryotic planktonic organisms are small in size but largely relevant in marine biogeochemical cycles. Due to their reduced size range (0.2 to 1 mu m in diameter), the effects of cell size on their metabolism have been hardly considered and are usually not examined in field studies. Here, we show the results of size-fractionated experiments of marine microbial respiration rate along a latitudinal transect in the Atlantic Ocean. The scaling exponents obtained from the power relationship between respiration rate and size were significantly higher than one. This superlinearity was ubiquitous across the latitudinal transect but its value was not universal revealing a strong albeit heterogeneous effect of cell size on microbial metabolism. Our results suggest that the latitudinal differences observed are the combined result of changes in cell size and composition between functional groups within prokaryotes. Communities where the largest size fraction was dominated by prokaryotic cyanobacteria, especially Prochlorococcus, have lower allometric exponents. We hypothesize that these larger, more complex prokaryotes fall close to the evolutionary transition between prokaryotes and protists, in a range where surface area starts to constrain metabolism and, hence, are expected to follow a scaling closer to linearity.Versión del editor8,951

Spatial and temporal variability of primary production and respiration in marine microbial plankton

El estudio de la escala de variabilidad del metabolismo planctónico permite poder inferir e identificar patrones relevantes, requerimiento básico para comprender los procesos subyacentes y poder establecer modelos para predecir las posibles respuestas de las comunidades planctónicas ante variaciones ambientales. Este trabajo está centrado en el estudio de la variabilidad de la producción primaria bruta (GPP, de sus siglas en inglés Gross Primary Production), respiración del plancton (CR, de sus siglas en inglés Community Respiration) y el balance entre ellos (producción neta de la comunidad, NCP, de sus siglas en inglés Net Primary Production) en escalas de tiempo cortas (de horas a días) y escalas espaciales pequeñas medianas (varios km a miles de km). La aplicación de nuevos sensores de oxígeno que permiten medir cambios de concentración del oxígeno disuelto en una masa de agua hace que se pueda reducir el tiempo de incubación necesario para las estimas del metabolismo planctónico (medido normalmente en incubaciones de 24h). En este trabajo se demuestra la aplicabilidad de estas nuevas tecnologías en comunidades de plancton natural, obteniendo resultados significativamente no diferentes a las medidas tradicionales de incubaciones con botellas claras/oscuras. Además, estas nuevas técnicas permiten realizar estudios sobre la linealidad de las tasas de respiración planctónica, ya que registran en continuo la variación de la concentración de oxígeno disuelto en el agua. Así, estudios pertenecientes a este trabajo demuestran que las comunidades planctónicas de la Ría de Vigo recolectadas en 5 momentos puntuales del año mostraron una respiración lineal a lo largo de las 24 primeras horas de incubación. Asimismo, se comprobaron distintos sesgos potenciales relacionados con el método de incubación con botellas claras/ oscuras no encontrándose evidencias de la existencia de errores asociados al volumen de botella ni al efecto botella. Los estudios de variabilidad del metabolismo planctónico a dos escalas diferentes (decenas de kilómetros y miles de kilómetros) demostraron que la relación entre la producción primaria bruta y la respiración de la comunidad depende del sistema de estudio. Mientras que en estudios de pequeña escala el metabolismo planctónico se encontraba en una situación de autotrofía neta/balance metabólico (NCP>0), con un fuerte acoplamiento entre GPP:CR en una gran escala de rangos, los estudios de gran escala mostraron una gran variabilidad en los datos de producción primaria bruta y unos datos de respiración más homogéneos, encontrándose en este caso las poblaciones estudiadas en situaciones de autotrofía neta (NCP>>0). El estudio de la respiración fraccionada por diversos tamaños (>0.8 µm y 0.8-0.2 µm) mostró una contribución de las bacterias muy variable, con valores medios del orden de 24-30%. En este trabajo se muestra como la estructura de tamaños no sólo afecta a la producción primaria, sino que también a la respiración de los diferentes grupos de tamaño que componen las comunidades planctónicas.Ministerio de EducaciónXunta de GaliciaMinisterio de Ciencia e Innovació

Testing potential bias in marine plankton respiration rates by dark bottle incubations in the NW Iberian shelf:Incubation time and bottle volume

The accurate determination of the balance between plankton production and respiration in the ocean is important for C budgets and global change predictions. Disagreements on the measurement of such a balance at different scales (from microbiological to biogeochemical) have produced a controversy over the trophic status of the ocean. This is especially striking in the oligotrophic open ocean, where plankton community O consumption rates in 24h incubations have frequently produced a net heterotrophic balance, but similar difficulties emerge in coastal systems. These results have been criticised due to the possibility that the standard 24h in vitro incubations are biased because of the long incubation time needed and the so-called "bottle effect". To study the influence of the incubation time and bottle volume on the measurement of plankton net metabolism, we carried out several time series experiments in the NW Iberian coastal system. Here we present measurements of plankton community respiration rates concurrently obtained through (1) standard in vitro changes in dissolved oxygen concentration after different incubation times ranging from 2 to 48. h, and with bottle volumes of 50, 125 and 570. mL, and (2) the decrease in the oxygen concentration measured every 20. s with oxygen microsensors, during 48. h. Our results refute the contention that 24. h dark 125. mL bottle incubations are systematically biased, and highlight the validity of oxygen microsensors to study the dynamics of natural marine plankton respiration

Response of two marine bacterial isolates to high CO2 concentration

Experimental results related to the effects of ocean acidification on planktonic marine microbes are still rather inconsistent and occasionally contradictory. Moreover, laboratory or field experiments that address the effects of changes in CO concentrations on heterotrophic microbes are very scarce, despite the major role of these organisms in the marine carbon cycle. We tested the direct effect of an elevated CO concentration (1000 ppmv) on the biomass and metabolic rates (leucine incorporation, CO fixation and respiration) of 2 isolates belonging to 2 relevant marine bacterial families, Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217). Our results demonstrate that, contrary to some expectations, high pCO did not negatively affect bacterial growth but increased growth efficiency in the case of MED217. The elevated partial pressure of CO (pCO) caused, in both cases, higher rates of CO fixation in the dissolved fraction and, in the case of MED217, lower respiration rates. Both responses would tend to increase the pH of seawater acting as a negative feedback between elevated atmospheric CO concentrations and ocean acidification

Seawater carbonate chemistry, biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217) in a laboratory experiment

Experimental results related to the effects of ocean acidification on planktonic marine microbes are still rather inconsistent and occasionally contradictory. Moreover, laboratory or field experiments that address the effects of changes in CO2 concentrations on heterotrophic microbes are very scarce, despite the major role of these organisms in the marine carbon cycle. We tested the direct effect of an elevated CO2 concentration (1000 ppmv) on the biomass and metabolic rates (leucine incorporation, CO2 fixation and respiration) of 2 isolates belonging to 2 relevant marine bacterial families, Rhodobacteraceae (strain MED165) and Flavobacteriaceae (strain MED217). Our results demonstrate that, contrary to some expectations, high pCO2 did not negatively affect bacterial growth but increased growth efficiency in the case of MED217. The elevated partial pressure of CO2 (pCO2) caused, in both cases, higher rates of CO2 fixation in the dissolved fraction and, in the case of MED217, lower respiration rates. Both responses would tend to increase the pH of seawater acting as a negative feedback between elevated atmospheric CO2 concentrations and ocean acidification