Coordinating STEM Core Courses for Student Success

Research indicates multi-section coordination improves the academic performance of students in STEM education. This paper describes the process of coordination in Precalculus, Calculus 1, and Calculus 2 courses undertaken by a large department that grew from the merger of two institutions through a pilot program, and a project grant. Components introduced in the project courses are documented, including collaborative problem-solving sessions, student learning assistants, Q&A sessions, and additional technology resources. Preliminary data is provided on the impacts of the initiative on student success. The study findings provide a template for coordination, faculty buy-in, and increased student engagement at similar institutions undergoing consolidations or implementing initiatives in core courses. Finally, this work provides proof-of-concept for coordination at a large minority-serving institution

DRACULA2 is a dynamic nucleoporin with a role in regulating the shade avoidance syndrome in Arabidopsis

Altres ajuts: C.T. received a Marie Curie IEF postdoctoral contract funded by the European Commission.I.R.-V. received initiallyan FPIfellowship from the SpanishMINECO and later a Beatriu de Pinós contract from AGAUR. - Our research is supported by grants from Generalitat Valenciana [PROMETEO/2009/112, PROMETEOII/2014/006] to M.R.P. and J.L.M.When plants grow in close proximity basic resources such as light can become limiting. Under such conditions plants respond to anticipate and/or adapt to the light shortage, a process known as the shade avoidance syndrome (SAS). Following genetic screening using a shade-responsive luciferase reporter line (PHYB:LUC), we identified DRACULA2 (DRA2), which encodes an Arabidopsis homolog of mammalian nucleoporin 98, a component of the nuclear pore complex (NPC). DRA2, together with other nucleoporins, participates positively in the control of the hypocotyl elongation response to plant proximity, a role that can be considered dependent on the nucleocytoplasmic transport of macromolecules (i.e. is transport dependent). In addition, our results reveal a specific role for DRA2 in controlling shade-induced gene expression. We suggest that this novel regulatory role of DRA2 is transport independent and that it might rely on its dynamic localization within and outside of the NPC. These results provide mechanistic insights in to how SAS responses are rapidly established by light conditions. They also indicate that nucleoporins have an active role in plant signaling

Plant proximity perception dynamically modulates hormone levels and sensitivity in Arabidopsis

Shade perception involves altered hormone synthesis and sensitivity. Here, we showed that several shade regulators act as positive and negative modulators of the hypocotyl auxin and/or brassinosteroid-induced elongation. The s hade a voidance s yndrome (SAS) refers to a set of plant responses initiated after perception by the phytochromes of light enriched in far-red colour reflected from or filtered by neighbouring plants. These varied responses are aimed at anticipating eventual shading from potential competitor vegetation. In Arabidopsis thaliana, the most obvious SAS response at the seedling stage is the increase in hypocotyl elongation. Here, we describe how plant proximity perception rapidly and temporally alters the levels of not only auxins but also active brassinosteroids and gibberellins. At the same time, shade alters the seedling sensitivity to hormones. Plant proximity perception also involves dramatic changes in gene expression that rapidly result in a new balance between positive and negative factors in a network of interacting basic helix-loop-helix proteins, such as HFR1, PAR1, and BIM and BEE factors. Here, it was shown that several of these factors act as auxin- and BR-responsiveness modulators, which ultimately control the intensity or degree of hypocotyl elongation. It was deduced that, as a consequence of the plant proximity-dependent new, dynamic, and local balance between hormone synthesis and sensitivity (mechanistically resulting from a restructured network of SAS regulators), SAS responses are unleashed and hypocotyls elongate

Placebo-resistant gut bacteria: Akkermansia muciniphila spp. and Familial Mediterranean fever disease

IntroductionDespite numerous investigations into the impact of drugs/probiotics on the gut microbiota composition in Familial Mediterranean Fever (FMF) patients, the question as to whether there exists a significant bacterial diversity(ies) independent of the placebo effect that can be reliably considered in clinical and nutritional trials remains unresolved.MethodsThis study represents the in augural analysis of the placebo’s influence on the gut microbiota of both healthy individuals and FMF afflicted men, utilizing previously collected data from PhyloChip™ DNA microarray experiments. A total of 15 healthy and 15 FMF male volunteers, aged 18 to 50, participated in this partially randomized placebo trial, which is accessible through the GEO Series accession number GSE111835.Results and DiscussionKey findings from current investigations include i. the anticipated divergence in gut bacteria resistance to placebo between healthy and FMF individuals, ii. the minor impact of placebo on gut bacterial diversities in healthy individuals, with Enterobacteriaceae diversities identified as placebo-resistant among “healthy” gut bacteria, and iii. the comprehensive influence of placebo on all bacterial phyla in the gut microbiome of FMF patients, extending to nearly all bacterial genera, except for the resilience of gut Akkermansia muciniphila spp. to placebo in FMF patients. This study underscores the susceptibility of Faecalibacterium, Blautia, and Clostridium genera to placebo. Consequently, this investigation holds significance for the proper design of placebo-controlled trials and establishes a foundation for further exploration of the gut-brain axis. Furthermore, it contributes valuable insights to discussions regarding proposals for probiotic therapies, particularly focusing on Faecalibacterium spp., Blautia spp., and Clostridium spp

A dual mechanism controls nuclear localization in the atypical basic-helix-loop-helix protein PAR1 of Arabidopsis thaliana

PAR1 is an atypical basic-helix-loop-helix (bHLH) protein that negatively regulates the shade avoidance syndrome in Arabidopsis thaliana acting as a transcriptional cofactor. Consistently with this function, PAR1 has to be in the nucleus to display biological activity. Previous structure-function analyses revealed that the N-terminal region of PAR1 drives the protein to the nucleus. However, truncated forms of PAR1 lacking this region still display biological activity, implying that PAR1 has additional mechanisms to localize into the nucleus. In this work, we compared the primary structure of PAR1 and various related and unrelated plant bHLH proteins, which led us to suggest that PAR1 contains a non-canonical nuclear localization signal (NLS) in the N-terminal region. By overexpressing truncated and mutated derivatives of PAR1, we have also investigated the importance of other regions of PAR1, such as the acidic and the extended HLH dimerization domains, for its nuclear localization. We found that, in the absence of the N-terminal region, a functional HLH domain is required for nuclear localization. Our results suggest the existence of a dual mechanism for PAR1 nuclear localization: (1) one mediated by the N-terminal non-consensus NLS and (2) a second one that involves interaction with other proteins via the dimerization domain.Research in the lab is supported by grants from the Generalitat de Catalunya (Xarba, 2009-SGR697) and Ministerio de Ciencia e Innovación—FEDER funds (BIO2005–00154, CSD2007–00036, BIO2008–00169).Peer reviewe

The shade avoidance syndrome in Arabidopsis: a fundamental role for atypical basic helix–loop–helix proteins as transcriptional cofactors

The shade avoidance syndrome (SAS) refers to a set of plant responses aimed at anticipating eventual shading by potential competitors. The SAS is initiated after perception of nearby vegetation as a reduction in the red to far-red ratio (R:FR) of the incoming light. Low R:FR light is perceived by the phytochromes, triggering dramatic changes in gene expression that, in seedlings, eventually result in an increased hypocotyl elongation to overgrow competitors. This response is inhibited by genes such as PHYTOCHROME RAPIDLY REGULATED 1 (PAR1), PAR2 and LONG HYPOCOTYL IN FR 1 (HFR1), which are transcriptionally induced by low R:FR. Although PAR1/PAR2 and HFR1 proteins belong to different groups of basic helix–loop–helix (bHLH) transcriptional regulators, they all lack a typical basic domain required for binding to E-box and G-box motifs in the promoter of target genes. By overexpressing derivatives of PAR1 and HFR1 we show that these proteins are actually transcriptional cofactors that do not need to bind DNA to directly regulate transcription. We conclude that protein–protein interactions involving the HLH domain of PAR1 and HFR1 are a fundamental aspect of the mechanism by which these proteins regulate gene expression, most likely through interaction with true transcription factors that do bind to the target genes and eventually unleash the observed SAS responses.Fellowships or contracts came from Ministerio de Educación (AG), Gobierno de Chile (NC-E) and CSIC (JB-T). Research in the lab is supported by grants from the Generalitat de Catalunya (Xarba, 2009-SGR697) and Ministerio de Ciencia e Innovación – FEDER funds (BIO2005-00154, CSD2007-00036, BIO2008-00169).Peer reviewe

PAR1 and PAR2 integrate shade and hormone transcriptional networks

PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2 are two negative regulators of shade avoidance syndrome (SAS) responses in Arabidopsis. PAR1 and PAR2 belong to the bHLH family of transcription factors and act as direct transcriptional repressors of auxin- and brassinosteroid-responsive genes. These observations led us to propose that PAR1 and PAR2 might integrate shade and hormone signals. After plant proximity perception by the phytochrome photoreceptors, the expression of PAR1, PAR2 and dozens of additional PAR genes is affected, initiating a complex web of transcriptional events instrumental for the establishment of the SAS responses. Studying the organization of this complex transcriptional network, that is, the interactions amongst the different PAR factors involved and how they are connected with the endogenous hormone-regulated transcriptional networks, seems therefore fundamental to understand how SAS is modulated

Regulatory components of shade avoidance syndrome

Competition for light has an important impact on plant development. Plants sense the presence of nearby competitor vegetation as a change in the light quality, i.e. a reduced red to far-red ratio. The responses to shade are generally referred to as the shade avoidance syndrome (SAS), and involve various developmental changes aimed to outgrow the neighbouring plants, and are characterized by enhanced elongation, reduced leaf expansion, decreased branching and ultimately early flowering. These responses can be detrimental in agriculture, because they induce reallocation of resources into elongation growth at the expense of harvestable organs, hence lowering the crop yield. Genetic analyses performed on the SAS response of seedlings have shown the involvement of several transcription factors in the regulation of this response. At least in a few cases, it has been shown that phytochrome rapidly regulates the expression levels of several modulators of hormone responsiveness, rapidly linking shade perception, massive changes in gene expression and modification of hormone sensitivity of the responsive tissues. Here we develop our view on how shade-modulated changes in the transcriptional profiles result in complex SAS responses.Financial support of JB-T and MS-M came from the CSIC (JAEdoc and JAEpre Programmes, respectively). AG and MG received predoctoral fellowships from FPU and FPI programmes, respectively, of the Spanish Ministry of Science and Innovation (MICINN). NC-E received a predoctoral fellowship from the Gobierno de Chile. Our research is supported by grants from the Generalitat de Catalunya (Xarxa de Referència en Biotecnologia and 2009SGR-697) and MICINN–FEDER (BIO2008-00169 and CSD2007-00036).Peer reviewe

Probiotic Lactobacillus acidophilus Strain INMIA 9602 Er 317/402 Administration Reduces the Numbers of Candida albicans and Abundance of Enterobacteria in the Gut Microbiota of Familial Mediterranean Fever Patients

Intestinal microorganisms play a crucial role in health and disease. The disruption of host–microbiota homeostasis has been reported to occur not only during disease development but also as a result of medication. Familial Mediterranean fever (FMF) is an inflammatory genetic disease characterized by elevated systemic reactivity against the commensal gut microbiota and high levels of Candida albicans in the gut. This study’s major objective was to investigate the effects of commercial probiotic Narine on the relative abundance of gut bacteria (specifically, enterobacteria, lactobacilli, Staphylococcus aureus, and enterococci) of C. albicans carrier and non-carrier FMF patients in remission. Our main finding indicates that the probiotic reduces numbers of C. albicans and abundance of enterobacteria in male and female patients of C. albicans carriers and non-carriers. It has pivotal effect on Enterococcus faecalis: increase in male non-carriers and decrease in female ones regardless of C. albicans status. No effect was seen for Lactobacillus and S. aureus. Our data suggest that M694V/V726A pyrin inflammasome mutations leading to FMF disease may contribute to gender-specific differences in microbial community structure in FMF patients. The study’s secondary objective was to elucidate the gender-specific differences in the gut’s microbial community of FMF patients. The tendency was detected for higher counts of enterobacteria in female FMF subjects. However, the small number of patients of these groups preclude from conclusive statements, pointing at the need for additional investigations with appropriate for statistical analysis groups of subjects involved in the study