Multi-filter transit observations of WASP-39b and WASP-43b with three San Pedro M\'artir telescopes

Three optical telescopes located at the San Pedro M\'artir National Observatory were used for the first time to obtain multi-filter defocused photometry of the transiting extrasolar planets WASP-39b and WASP-43b. We observed WASP-39b with the 2.12m telescope in the U filter for the first time, and additional observations were carried out in the R and I filters using the 0.84m telescope. WASP-43b was observed in VRI with the same instrument, and in the i filter with the robotic 1.50m telescope. We reduced the data using different pipelines and performed aperture photometry with the help of custom routines, in order to obtain the light curves. The fit of the light curves (1.5--2.5mmag rms), and of the period analysis, allowed a revision of the orbital and physical parameters, revealing for WASP-39b a period ($4.0552947 \pm 9.65 \times 10^{-7}$ days) which is $3.084 \pm 0.774$ seconds larger than previously reported. Moreover, we find for WASP-43b a planet/star radius ($0.1738 \pm 0.0033$) which is $0.01637 \pm 0.00371$ larger in the i filter with respect to previous works, and that should be confirmed with additional observations. Finally, we confirm no evidence of constant period variations in WASP-43b.Comment: 13 pages, 7 figures, accepted in PASP, scheduled for the February 1, 2015 issu

Morphological Estimation of Cellularity on Neo-Adjuvant Treated Breast Cancer Histological Images

This paper describes a methodology that extracts key morphological features from histological breast cancer images in order to automatically assess Tumour Cellularity (TC) in Neo-Adjuvant treatment (NAT) patients. The response to NAT gives information on therapy efficacy and it is measured by the residual cancer burden index, which is composed of two metrics: TC and the assessment of lymph nodes. The data consist of whole slide images (WSIs) of breast tissue stained with Hematoxylin and Eosin (H&E) released in the 2019 SPIE Breast Challenge. The methodology proposed is based on traditional computer vision methods (K-means, watershed segmentation, Otsu’s binarisation, and morphological operations), implementing colour separation, segmentation, and feature extraction. Correlation between morphological features and the residual TC after a NAT treatment was examined. Linear regression and statistical methods were used and twenty-two key morphological parameters from the nuclei, epithelial region, and the full image were extracted. Subsequently, an automated TC assessment that was based on Machine Learning (ML) algorithms was implemented and trained with only selected key parameters. The methodology was validated with the score assigned by two pathologists through the intra-class correlation coefficient (ICC). The selection of key morphological parameters improved the results reported over other ML methodologies and it was very close to deep learning methodologies. These results are encouraging, as a traditionally-trained ML algorithm can be useful when limited training data are available preventing the use of deep learning approaches

Estimation of cellularity in tumours treated with Neoadjuvant therapy: A comparison of Machine Learning algorithms

This paper describes a method for residual tumour cellularity (TC) estimation in Neoadjuvant treatment (NAT) of advanced breast cancer. This is determined manually by visual inspection by a radiologist, then an automated computation will contribute to reduce time workload and increase precision and accuracy. TC is estimated as the ratio of tumour area by total image area estimated after the NAT. The method proposed computes TC by using machine learning techniques trained with information on morphological parameters of segmented nuclei in order to classify regions of the image as tumour or normal. The data is provided by the 2019 SPIE Breast challenge, which was proposed to develop automated TC computation algorithms. Three algorithms were implemented: Support Vector Machines, Nearest K-means and Adaptive Boosting (AdaBoost) decision trees. Performance based on accuracy is compared and evaluated and the best result was obtained with Support Vector Machines. Results obtained by the methods implemented were submitted during ongoing challenge with a maximum of 0.76 of prediction probability of success

In Situ Characterization of Human Lymphoid Tissue Immune Cells by Multispectral Confocal Imaging and Quantitative Image Analysis; Implications for HIV Reservoir Characterization.

CD4 T cells are key mediators of adaptive immune responses during infection and vaccination. Within secondary lymphoid organs, helper CD4 T cells, particularly those residing in germinal centers known as follicular helper T cells (Tfh), provide critical help to B-cells to promote their survival, isotype switching and selection of high affinity memory B-cells. On the other hand, the important role of Tfh cells for the maintenance of HIV reservoir is well documented. Thus, interrogating and better understanding the tissue specific micro-environment and immune subsets that contribute to optimal Tfh cell differentiation and function is important for designing successful prevention and cure strategies. Here, we describe the development and optimization of eight multispectral confocal microscopy immunofluorescence panels designed for in depth characterization and immune-profiling of relevant immune cells in formalin-fixed paraffin-embedded human lymphoid tissue samples. We provide a comprehensive library of antibodies to use for the characterization of CD4+ T-cells -including Tfh and regulatory T-cells- as well as CD8 T-cells, B-cells, macrophages and dendritic cells and discuss how the resulting multispectral confocal datasets can be quantitatively dissected using the HistoCytometry pipeline to collect information about relative frequencies and immune cell spatial distributions. Cells harboring actively transcribed virus are analyzed using an in-situ hybridization assay for the characterization of HIV mRNA positive cells in combination with additional protein markers (multispectral RNAscope). The application of this methodology to lymphoid tissues offers a means to interrogate multiple relevant immune cell targets simultaneously at increased resolution in a reproducible manner to guide CD4 T-cell studies in infection and vaccination

Haematological parameters in a free-ranging population of Didelphis virginiana from Mexico

The American opossum Didelphis virginiana is the marsupial species with the largest geographic distribution in North America, a very important natural host and key to the maintenance and transmission of many zoonotic pathogenic microorganisms of importance in public health, and one of the wild mammals with the greatest adaptation to the human environment, but despite all that very little is known about some physiological aspects in their free-ranging populations. In the present study, basic haematological parameters of 201 opossums from a synanthropic population of D. virginiana in a rural locality of the state of Yucatan, are first described. The average values of haemoglobin, packed cell volume, red blood cells, and eosinophils were higher in males and adults (except eosinophils) than in females and juveniles, respectively, and juvenile opossums had higher values of lymphocytes, neutrophils, and platelets than males. Non-pregnant females had significantly higher values of mean corpuscular volume, lymphocytes and platelets than pregnant ones, while red blood cell count and segmented neutrophils showed higher values in pregnant females. The establishment of the basic haematological parameters for free-ranging populations of D. virginiana is a very useful reference for both the health monitoring of the populations and further studying the host-parasite relationship of some zoonotic pathogens present in the Yucatan Peninsula

Deformation heterogeneity study of a 6061-T6 aluminum alloy processed by equal channel angular pressing

Among the severe plastic deformation techniques, the equal channel angular pressing (ECAP) has drastically improved the mechanical properties of the processed alloys. However, information regarding friction phenomenon, which modifies the deformation at the surface and the heterogeneity microstrain state produced by the process itself, is still scarce. In the present work, the deformation heterogeneity and the friction effect, at the surface in the bulk material of the 6061-T6 aluminum alloy processed by ECAP, is presented and discussed. The residual stress (RS) measurements were performed by means of X-Ray diffraction. By means of synchrotron diffraction, volumetric sections of the ECAPed samples were characterized. Finite element analysis showed a good agreement with the experimentally obtained residual stress and microhardness mapping results. The study also showed that the highest deformation zones were located at the outer parts of the deformed samples (top and bottom), while the inner zone showed strain oscillations of up to 49±2 MPa.Peer ReviewedPostprint (author's final draft

Ciencia y tecnología en México

En la medida en que la actividad científico-tecnológica se ocupe de la solución de los grandes problemas de la sociedad, las posibilidades de crecimiento económico y desarrollo son mayores. Como parte sustancial de las funciones de la Universidad Nacional Autónoma de México se encuentra la actividad científica. A ella se dedican cerca de 3 mil académicos, de los cuales dos terceras partes realizan investigación en el área de ciencias exactas y naturales y el resto en las ciencias sociales y las humanidades. Las áreas del conocimiento que se cultivan, cubren casi todos los campos de la ciencia y un número significativo de los científicos más renombrados del país son miembros de su personal académico. En esta publicación se presentan cinco trabajos que abordan una temática amplia sobre algunos problemas seculares como la dependencia y la transferencia tecnológica, y concluye con una suerte de reflexión prospectiva de los impactos de las nuevas tecnologías en los países subdesarrollados

Evaluation of the ability of Bifidobacterium longum to metabolize human intestinal mucus

The ability of Bifidobacterium longum to use intestinal mucus as a metabolizable source was characterized. Bifidobacterium longum biotype longum NCIMB8809 was grown in a chemically semi-defined medium supplemented with human intestinal mucus, and the cytoplasmic protein profiles and several glycosyl hydrolase activities were analysed and compared with those obtained from the same bacterium grown in the absence of mucus. We were able to identify 22 different proteins in the cytoplasmic fraction, of which nine displayed a different concentration in the presence of mucus. Among the proteins whose concentrations varied, we found specific enzymes that are involved in the response to different environmental conditions, and also proteins that mediate interaction with mucus in bacteria. Significant changes in some glycoside-hydrolysing activities were also detected. In addition, stable isotope labelling of amino acids in cell culture demonstrated that B. longum incorporates leucine from the glycoprotein matrix of mucin within its proteins. This study provides the first proteomic data regarding the interaction of B. longum with intestinal mucus, and contributes to the understanding of the behaviour of this intestinal species in its natural ecological nich