The puzzle of the 1996 Bardarbunga, Iceland, Earthquake: No volumetric component in the source mechanism

A volcanic earthquake with Mw 5:6 occurred beneath the Bárdarbunga caldera in Iceland on 29 September 1996. This earthquake is one of a decade-long sequence of M 5 events at Bárdarbunga with non-double-couple mechanisms in the Global Centroid Moment Te

The possible existence of Hs in nature from a geochemical point of view

A hypothesis of the existence of a long-lived isotope 271Hs in natural molybdenites and osmirides is considered from a geochemical point of view. It is shown that the presence of Hs in these minerals can be explained only by making an additional ad hoc assumption on the existence of an isobaric pair of 271Bh-271Hs. This assumption could be tested by mass-spectrometric measurements of U, Pb, Kr, Xe, and Zr isotopic shifts.Comment: 5 pages, no figures. Physics of Particles and Nuclei Letters, 2006, Vol. 3, No. 3, pp. 165-168 in pres

Crustal structure beneath western and eastern Iceland from surface waves and receiver functions

We determine the crustal structures beneath 14 broad-band seismic stations, deployed in western, eastern, central and southern Iceland, using surface wave dispersion curves and receiver functions. We implement a method to invert receiver functions using constraints obtained from genetic algorithm inversion of surface waves. Our final models satisfy both data sets. The thickness of the upper crust, as defined by the velocity horizon Vs= 3.7 km s−1, is fairly uniform at ∼6.5–9 km beneath the Tertiary intraplate areas of western and eastern Iceland, and unusually thick at 11 km beneath station HOT22 in the far south of Iceland. The depth to the base of the lower crust, as defined by the velocity horizon Vs= 4.1 km s−1 is ∼20–26 km in western Iceland and ∼27–33 km in eastern Iceland. These results agree with those of explosion profiles that detect a thinner crust beneath western Iceland than beneath eastern Iceland. An earlier report of a substantial low-velocity zone beneath the Middle Volcanic Zone in the lower crust is confirmed by a similar observation beneath an additional station there. As was found in previous receiver function studies, the most reliable feature of the results is the clear division into an upper sequence that is a few kilometres thick where velocity gradients are high, and a lower, thicker sequence where velocity gradients are low. The transition to typical mantle velocities is variable, and may range from being very gradational to being relatively sharp and clear. A clear Moho, by any definition, is rarely seen, and there is thus uncertainty in estimates of the thickness of the crust in many areas. Although a great deal of seismic data are now available constraining the structures of the crust and upper mantle beneath Iceland, their geological nature is not well understood

P04-45. Characterization of the plasma cell repertoire in acute HIV-1 infection (AHI)

Analysis of immunoglobulin (Ig) VH and VL genes derived from sorted single B cells is a powerful technology for definition of Ig repertoires to viral infections. The purpose of this study was to characterize the Ig repertoire of plasma cells/plasmablasts (PCs) in subjects early on after HIV transmission

Imaging the mantle beneath Iceland using integrated seismological techniques

Using a combination of body wave and surface wave data sets to reveal the mantle plume and plume head, this study presents a tomographic image of the mantle structure beneath Iceland to 400 km depth. Data comes primarily from the PASSCAL-HOTSPOT deployment of 30 broadband instruments over a period of 2 years, and is supplemented by data from the SIL and ICEMELT networks. Three sets of relative teleseismic body wave arrival times are generated through cross correlation: S and SKS arrivals at 0.03–0.1 Hz, and P and PKIKP arrivals at 0.03–0.1 and 0.8–2.0 Hz. Prior to inversion the crustal portion of the travel time anomalies is removed using the crustal model ICECRTb. This step has a significant effect on the mantle velocity variations imaged down to a depth of ∼250 km. Inversion of relative arrival times only provides information on lateral velocity variations. Surface waves are therefore used to provide absolute velocity information for the uppermost mantle beneath Iceland. The average wave number for the Love wave fundamental mode at 0.020 and 0.024 Hz is measured and used to invert for the average S velocity. Combination of the body wave and surface wave information reveals a predominantly horizontal low-velocity anomaly extending from the Moho down to ∼250 km depth, interpreted as a plume head. Below the plume head a near-cylindrical low-velocity anomaly with a radius of ∼100 km and peak VP and VS anomalies of −2% and −4%, respectively, extends down to the maximum depth of resolution at 400 km. Within the plume head, in the uppermost mantle above the core of the plume, there is a relatively high velocity with a maximum VP and VS anomaly of +2%. This high-velocity anomaly may be the result of the extreme degree of melt extraction necessary to generate the thick (46 km) crust in central Iceland. Comparison of the plume volumetric flux implied by our images, the crustal generation rate, and the degree of melting suggested by rare earth element inversions, suggests that (1) mantle material must be flowing horizontally away from the plume core faster than the overlying lithosphere and (2) the bulk of the plume material does not participate in melting beneath Iceland

Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology.

BACKGROUND: A systems biology approach to cardiac physiology requires a comprehensive representation of how coordinated processes operate in the heart, as well as the ability to interpret relevant transcriptomic and proteomic experiments. The Gene Ontology (GO) Consortium provides structured, controlled vocabularies of biological terms that can be used to summarize and analyze functional knowledge for gene products. METHODS AND RESULTS: In this study, we created a computational resource to facilitate genetic studies of cardiac physiology by integrating literature curation with attention to an improved and expanded ontological representation of heart processes in the Gene Ontology. As a result, the Gene Ontology now contains terms that comprehensively describe the roles of proteins in cardiac muscle cell action potential, electrical coupling, and the transmission of the electrical impulse from the sinoatrial node to the ventricles. Evaluating the effectiveness of this approach to inform data analysis demonstrated that Gene Ontology annotations, analyzed within an expanded ontological context of heart processes, can help to identify candidate genes associated with arrhythmic disease risk loci. CONCLUSIONS: We determined that a combination of curation and ontology development for heart-specific genes and processes supports the identification and downstream analysis of genes responsible for the spread of the cardiac action potential through the heart. Annotating these genes and processes in a structured format facilitates data analysis and supports effective retrieval of gene-centric information about cardiac defects. Circ Genom Precis Med 2018 Feb; 11(2):e001813

An integrated ontology resource to explore and study host-virus relationships.

Our growing knowledge of viruses reveals how these pathogens manage to evade innate host defenses. A global scheme emerges in which many viruses usurp key cellular defense mechanisms and often inhibit the same components of antiviral signaling. To accurately describe these processes, we have generated a comprehensive dictionary for eukaryotic host-virus interactions. This controlled vocabulary has been detailed in 57 ViralZone resource web pages which contain a global description of all molecular processes. In order to annotate viral gene products with this vocabulary, an ontology has been built in a hierarchy of UniProt Knowledgebase (UniProtKB) keyword terms and corresponding Gene Ontology (GO) terms have been developed in parallel. The results are 65 UniProtKB keywords related to 57 GO terms, which have been used in 14,390 manual annotations; 908,723 automatic annotations and propagated to an estimation of 922,941 GO annotations. ViralZone pages, UniProtKB keywords and GO terms provide complementary tools to users, and the three resources have been linked to each other through host-virus vocabulary

DYNC2H1 hypomorphic or retina-predominant variants cause nonsyndromic retinal degeneration

Purpose: Determining the role of DYNC2H1 variants in nonsyndromic inherited retinal disease (IRD). Methods: Genome and exome sequencing were performed for five unrelated cases of IRD with no identified variant. In vitro assays were developed to validate the variants identified (fibroblast assay, induced pluripotent stem cell [iPSC] derived retinal organoids, and a dynein motility assay). Results: Four novel DYNC2H1 variants (V1, g.103327020_103327021dup; V2, g.103055779A>T; V3, g.103112272C>G; V4, g.103070104A>C) and one previously reported variant (V5, g.103339363T>G) were identified. In proband 1 (V1/V2), V1 was predicted to introduce a premature termination codon (PTC), whereas V2 disrupted the exon 41 splice donor site causing incomplete skipping of exon 41. V1 and V2 impaired dynein-2 motility in vitro and perturbed IFT88 distribution within cilia. V3, homozygous in probands 2–4, is predicted to cause a PTC in a retina-predominant transcript. Analysis of retinal organoids showed that this new transcript expression increased with organoid differentiation. V4, a novel missense variant, was in trans with V5, previously associated with Jeune asphyxiating thoracic dystrophy (JATD). Conclusion: The DYNC2H1 variants discussed herein were either hypomorphic or affecting a retina-predominant transcript and caused nonsyndromic IRD. Dynein variants, specifically DYNC2H1 variants are reported as a cause of non syndromic IRD

Author Correction: Nuclear-mitochondrial DNA segments resemble paternally inherited mitochondrial DNA in humans

An amendment to this paper has been published and can be accessed via a link at the top of the paper