453 research outputs found
Island nucleation in the presence of step edge barriers: Theory and applications
We develop a theory of nucleation on top of two-dimensional islands bordered
by steps with an additional energy barrier for descending atoms.
The theory is based on the concept of the residence time of an adatom on the
island,and yields an expression for the nucleation rate which becomes exact in
the limit of strong step edge barriers. This expression differs qualitatively
and quantitatively from that obtained using the conventional rate equation
approach to nucleation [J. Tersoff et al., Phys. Rev. Lett.72, 266 (1994)]. We
argue that rate equation theory fails because nucleation is dominated by the
rare instances when two atoms are present on the island simultaneously. The
theory is applied to two distinct problems: The onset of second layer
nucleation in submonolayer growth, and the distribution of the sizes of top
terraces of multilayer mounds under conditions of strong step edge barriers.
Application to homoepitaxial growth on Pt(111) yields the estimate eV for the additional energy barrier at CO-decorated steps.Comment: 13 pages, 3 figure
Promoter hypermethylation of SHOX2 and SEPT9 is a potential biomarker for minimally invasive diagnosis in adenocarcinomas of the biliary tract
Clinicopathological data of the 20 biliary tract cancer cases and 100 gender- and age-matched controls included in plasma study. (XLSX 116 kb
Simulations of energetic beam deposition: from picoseconds to seconds
We present a new method for simulating crystal growth by energetic beam
deposition. The method combines a Kinetic Monte-Carlo simulation for the
thermal surface diffusion with a small scale molecular dynamics simulation of
every single deposition event. We have implemented the method using the
effective medium theory as a model potential for the atomic interactions, and
present simulations for Ag/Ag(111) and Pt/Pt(111) for incoming energies up to
35 eV. The method is capable of following the growth of several monolayers at
realistic growth rates of 1 monolayer per second, correctly accounting for both
energy-induced atomic mobility and thermal surface diffusion. We find that the
energy influences island and step densities and can induce layer-by-layer
growth. We find an optimal energy for layer-by-layer growth (25 eV for Ag),
which correlates with where the net impact-induced downward interlayer
transport is at a maximum. A high step density is needed for energy induced
layer-by-layer growth, hence the effect dies away at increased temperatures,
where thermal surface diffusion reduces the step density. As part of the
development of the method, we present molecular dynamics simulations of single
atom-surface collisions on flat parts of the surface and near straight steps,
we identify microscopic mechanisms by which the energy influences the growth,
and we discuss the nature of the energy-induced atomic mobility
Adaptive Lévy processes and area-restricted search in human foraging
A considerable amount of research has claimed that animals’ foraging behaviors display movement lengths with power-law distributed tails, characteristic of Lévy flights and Lévy walks. Though these claims have recently come into question, the proposal that many animals forage using Lévy processes nonetheless remains. A Lévy process does not consider when or where resources are encountered, and samples movement lengths independently of past experience. However, Lévy processes too have come into question based on the observation that in patchy resource environments resource-sensitive foraging strategies, like area-restricted search, perform better than Lévy flights yet can still generate heavy-tailed distributions of movement lengths. To investigate these questions further, we tracked humans as they searched for hidden resources in an open-field virtual environment, with either patchy or dispersed resource distributions. Supporting previous research, for both conditions logarithmic binning methods were consistent with Lévy flights and rank-frequency methods–comparing alternative distributions using maximum likelihood methods–showed the strongest support for bounded power-law distributions (truncated Lévy flights). However, goodness-of-fit tests found that even bounded power-law distributions only accurately characterized movement behavior for 4 (out of 32) participants. Moreover, paths in the patchy environment (but not the dispersed environment) showed a transition to intensive search following resource encounters, characteristic of area-restricted search. Transferring paths between environments revealed that paths generated in the patchy environment were adapted to that environment. Our results suggest that though power-law distributions do not accurately reflect human search, Lévy processes may still describe movement in dispersed environments, but not in patchy environments–where search was area-restricted. Furthermore, our results indicate that search strategies cannot be inferred without knowing how organisms respond to resources–as both patched and dispersed conditions led to similar Lévy-like movement distributions
The process of irreversible nucleation in multilayer growth. I. Failure of the mean-field approach
The formation of stable dimers on top of terraces during epitaxial growth is
investigated in detail. In this paper we focus on mean-field theory, the
standard approach to study nucleation. Such theory is shown to be unsuitable
for the present problem, because it is equivalent to considering adatoms as
independent diffusing particles. This leads to an overestimate of the correct
nucleation rate by a factor N, which has a direct physical meaning: in average,
a visited lattice site is visited N times by a diffusing adatom. The dependence
of N on the size of the terrace and on the strength of step-edge barriers is
derived from well known results for random walks. The spatial distribution of
nucleation events is shown to be different from the mean-field prediction, for
the same physical reason. In the following paper we develop an exact treatment
of the problem.Comment: 19 pages, 3 figures. To appear in Phys. Rev.
Defect-induced perturbations of atomic monolayers on solid surfaces
We study long-range morphological changes in atomic monolayers on solid
substrates induced by different types of defects; e.g., by monoatomic steps in
the surface, or by the tip of an atomic force microscope (AFM), placed at some
distance above the substrate. Representing the monolayer in terms of a suitably
extended Frenkel-Kontorova-type model, we calculate the defect-induced density
profiles for several possible geometries. In case of an AFM tip, we also
determine the extra force exerted on the tip due to the tip-induced
de-homogenization of the monolayer.Comment: 4 pages, 2 figure
Self-diffusion along step bottoms on Pt(111)
First-principles total energies of periodic vicinals are used to estimate barriers for Pt-adatom diffusion along straight and kinked steps on Pt(111), and around a corner where straight steps intersect. In all cases studied, hopping diffusion has a lower barrier than concerted substitution. In conflict with simulations of dendritic Pt island formation on Pt(111), hopping from a corner site to a step whose riser is a (111)-micro facet is predicted to be more facile than to one whose riser is a (100)
Comparison of potential growth rates of Ceratium hirundinella with observed population density changes
Ceratium hirundinella cells in Lake Constance divided during the second half of the night. Growth rates are calculated from the fraction of cells undergoing cell division. Potential growth rates are compared with observed changes in population density. The discrepancy between both is discussed as a possible function of fungal parasitism
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