Finite dimensional systems with random external fields and Neutrino propagation in fluctuating media

We develop the general formalism for the study of neutrino propagation in presence of stochastic media. This formalism allows the systematic derivation of evolution equations for averaged quantities as survival probabilities and higher order distribution moments. The formalism applies equally to any finite dimensional Schroedinger equation in presence of a stochastic external force. New integro-differential equations valid for finite correlated processes are obtained for the first time. For the particular case of exponentially correlated processes a second order ordinary equation is obtained. As a consequence, the Redfield equation valid for Gaussian delta-correlated noise is rederived in a simple way. The formalism, together with the quantum correlation theorem is applied to the computation of higher moments and correlation functions of practical interest in forthcoming high precision neutrino experiments. It is shown that equal and not equal time correlators follow similar differential equations.Comment: 12 pags., Latex. 1 fig., ps. epsfig macro. minor typo errors correcte

Effects of ocean acidification on invertebrate settlement at volcanic CO<inf>2</inf> vents

We present the first study of the effects of ocean acidification on settlement of benthic invertebrates and microfauna. Artificial collectors were placed for 1 month along pH gradients at CO2 vents off Ischia (Tyrrhenian Sea, Italy). Seventy-nine taxa were identified from six main taxonomic groups (foraminiferans, nematodes, polychaetes, molluscs, crustaceans and chaetognaths). Calcareous foraminiferans, serpulid polychaetes, gastropods and bivalves showed highly significant reductions in recruitment to the collectors as pCO2 rose from normal (336-341 ppm, pH 8.09-8.15) to high levels (886-5,148 ppm) causing acidified conditions near the vents (pH 7.08-7.79). Only the syllid polychaete Syllis prolifera had higher abundances at the most acidified station, although a wide range of polychaetes and small crustaceans was able to settle and survive under these conditions. A few taxa (Amphiglena mediterranea, Leptochelia dubia, Caprella acanthifera) were particularly abundant at stations acidified by intermediate amounts of CO2 (pH 7. 41-7.99). These results show that increased levels of CO2 can profoundly affect the settlement of a wide range of benthic organisms. © 2010 Springer-Verlag

Association between progesterone concentration and endometrial gene expression in dairy cows

The objective of this study was to evaluate the association between progesterone concentration on Days 4 and 9 of the estrus cycle and endometrial transcriptome at Day 9 in lactating grazing dairy cows. Blood samples were obtained on Days 0, 4, and 9 for progesterone measurement by chemiluminescence. Cows were assigned to one of the following groups (n = 3 per group): cows with low physiological progesterone on Day 4, cows in anestrous, cows with high physiological progesterone on Day 4, and superovulated cows. Endometrial biopsy samples were obtained on Day 9 for RNA sequencing. Quality control and determination of differentially expressed genes (false discovery rate &lt;0.05) were determined using the edgeR package for R software. We identified 3,042 differentially expressed genes among the 4 groups. Cows having high physiological progesterone and superovulated cows showed high similarities and clustered apart from those in anestrus or having low physiological progesterone. Functional analysis using Database for Annotation, Visualization, and Integrated Discovery revealed that endometrial genes upregulated by low progesterone concentration are enriched genes involved in the immune system and inflammatory response. Conversely, cows with high physiological progesterone concentration presented an endometrial transcriptome with similarities to cows with good genetic merit for fertility, showing upregulation of genes related to uterine relaxation–contraction, focal adhesion, GnRH signaling pathway, and epidermal growth factor–like related terms, suggesting a favorable embryo environment. In conclusion, our results support the concept that there is a threshold of progesterone concentration at the beginning of the luteal phase associated with endometrial expression of critical genes involved in the preparation of the uterine environment for embryo implantation.Facultad de Ciencias Veterinaria

Exchange of nutrients and oxygen across the sediment-water interface below a Sparus aurata marine fish farm in the north-western Mediterranean Sea

Purpose: This study analyzes the effects of aquaculture activities in open seawater in the north-western coastal waters of the Mediterranean Sea. It is the first of its kind to be based on benthic flux data gathered in situ below fish farms for this particular area. Materials and methods: Samples were collected on four sampling campaigns over a 1-year cycle under a Sparus aurata fish farm facility where benthic fluxes were measured in situ using light and dark benthic chambers. Bottom water and sediment samples were also collected. Data were compared to those for a nearby control station. Results and discussion: Significant differences were found (ANOVA, p < 0. 05) between concentrations of organic matter (OM), total phosphorus and redox potentials in sediments located under the cages and those of the control station. The consumption of dissolved oxygen (DO) by sediment and positive ammonium (NH4 +) fluxes was stimulated by OM content, with correlations of r = -0. 60 (p < 0. 01) and r = 0. 70 (p < 0. 01), respectively. The OM content of sediments was found to be consistently higher under the cages than at the control station, with the highest value (1. 8 ± 0. 7 %) under the cages observed during the early summer; values of DO and NH4 + fluxes were -64 ± 17 and 12. 7 ± 1. 0 mmol m-2 day-1, respectively. PO4 3- fluxes were consistently higher in the fish farm sediments (between 0. 58 and 0. 98 mmol m-2 day-1) than those observed at the control station. Nitrate (NO3 -) fluxes were found to be consistently negative due to denitrification occurring in the sediments and were related to the concentration of NO3 - in bottom waters (r = 0. 92, p < 0. 01). Si fluxes were shown to be associated with water temperature (r = 0. 59, p < 0. 05). Conclusions: The results imply that sediments located below cages accumulate organic matter originating from aquaculture activities, especially during summer months when this activity increases. Sediments undergo biogeochemical changes that mainly affect fluxes of DO, NH4 + and soluble reactive phosphorus, although these do not seem to have a significant impact on the quality of the water column due to the hydrodynamic characteristics of the area. © 2012 Springer-Verlag.We would like to thank the Caja del Mediterraneo for a predoctoral fellowship fund for this research and Antonio Asuncion Acuigroup Maremar manager for the facilities and support in conducting the study. The translation of this paper was funded by the Universidad Politecnica de Valencia, Spain. We are grateful for the valuable comments of the anonymous reviewers on previous versions of the manuscript.Morata Higón, T.; Sospedra, J.; Falco Giaccaglia, SL.; Rodilla Alama, M. (2012). Exchange of nutrients and oxygen across the sediment-water interface below a Sparus aurata marine fish farm in the north-western Mediterranean Sea. Journal of Soils and Sediments. 12(10):1623-1632. doi:10.1007/s11368-012-0581-2S162316321210APHA, AWWA, and WEF (2005) Standard methods for the examination of water wastewater, 21st edn. American Public Health Association, WashingtonAksu M, Kocatas A (2007) Environmental effects of the three fish farms in Izmir Bay (Aegean Sea-Turkey) on water column and sediment. Rapport du 38e Congrés de la Commission Internationale Pour L’exploration Scientifique de la Mer Méditerranée 38, 414Aminot A, Chaussepied M (1983) Manuel des analyses chimiques en milieu marin. Centre National pour l’Explotation des Oceans, BrestArocena R, Conde D (1999) Sedimento. Métodos en ecología de aguas continentales. Universidad de la República, Montevideo, pp 40–52Asociación Empresarial de Productores de Cultivos Marinas (APROMAR) (2010) La Acuicultura Marina de Peces en España, pp. 69Baumgarten MGZ, Rocha JM, Niencheski LFH (1996) Manual de análises em oceanografia química, Rio GrandeBelias C, Dassenakis M, Scoullos M (2007) Study of the N, P and Si fluxes between fish farm sediment and seawater. Results of simulation experiments employing a benthic chamber under various redox conditions. Mar Chem 103:266–275Berelson WM, McManus J, Coale KH, Johnson KS, Burdige D, Kilgore T, Colodner D, Chavez F, Kudela R, Boucher J (2003) A time series of benthic flux measurements from Monterey Bay, CA. Cont Shelf Res 23:457–481Black KD, McDougall N (2002) Hydrography of four Mediterranean marine cage sites. J Appl Ichthyol 18:129–133Borja A, Rodríguez JG, Black K, Bodoy A, Emblow C, Fernandes TF, Forte J, Karakassis I, Muxika I, Nickell TD, Papageorgiou N, Pranovi F, Sevastou K, Tomassetti P, Angel D (2009) Assessing the suitability of a range of benthic indices in the evaluation of environmental impact of fin and shellfish aquaculture located in sites across Europe. Aquaculture 293:231–240Cermelj B, Ogrinc N, Faganeli J (2001) Anoxic mineralization of biogenic debris in near-shore marine sediments (Gulf of Trieste, northern Adriatic). Sci Total Environ 266:143–152Dell’Anno A, Mei ML, Pusceddu A, Danovaro R (2002) Assessing the trophic state and eutrophication of coastal marine systems: a new approach based on the biochemical composition of sediment organic matter. Mar Pollut Bull 44:611–622Dosdat A (2001) Environmental impact of aquaculture in the Mediterranean: nutritional and feeding aspects. Environmental impact assessment of Mediterranean aquaculture farms. Cah Options Méditerr CIHEAM-FAO 55:23–36Ferrón S, Ortega T, Forja JM (2009) Benthic fluxes in a tidal salt marsh creek by fish farm activities: Río San Pedro (Bay of Cádiz, SW Spain). Mar Chem 113:50–62Freitas U, Niencheski LFH, Zarzur S, Manzolli RP, Vieira JPP, Rosa LC (2008) Influência de um cultivo de camaraô sobre o metabolismo béntico e a qualidade da agua. Rev Bras Eng Agríc Ambient 12:293–301Hall POJ, Holby O, Kollberg S, Samuelsson MO (1992) Chemical fluxes and mass balances in a marine fish cage farm: IV. Nitrogen. Mar Ecol Prog Ser 89:81–91Hargrave B (2005) Environmental effects of marine finfish aquaculture. The handbook of environmental. chemistry, vol. 5. Part M. Springer, BerlinHargrave BT, Phillips GA, Doucette LI, White MJ, Milligan TG, Wildish DJ, Cranston RE (1997) Assessing benthic impacts of organic enrichment from marine aquaculture. Water Air Soil Pollut 99:641–650Heilskov AC, Holmer M (2001) Effects of benthic fauna on organic matter mineralization in fish-farm sediments: importance of size and abundance. ICES J Mar Sci 58:427–434Herbert RA (1999) Nitrogen cycling in coastal marine ecosystems. FEMS Microbiol Rev 23:563–590Holby O, Hall POJ (1991) Chemical fluxes and mass balances in a marine fish cage farm. 11. Phosphorus. Mar Ecol Prog Ser 70:263–272Holby O, Hall POJ (1994) Chemical fluxes and mass balances in a marine fish cage farm. III. Silicon. Aquaculture 120:305–318Jackson C, Preston N, Thompson PJ (2004) Intake and discharge nutrient loads at three intensive shrimp farms. Aquacult Res 35:1053–1061Karakassis I, Tsapakis M, Hatziyanni E (1998) Seasonal variability in sediment profiles beneath fish farm cages in the Mediterranean. Mar Ecol Prog Ser 162:243–252Kaymakci A, Aksu M, Egemen O (2010) Impacts of the fish farms on the water column nutrient concentrations and accumulation of heavy metals in the sediments in the eastern Aegean Sea (Turkey). Environ Monit Assess 162:439–451Lorenti M, De Falco G (2004) Measurements and characterization of abiotic variables. In: Gambi MC, Diappiano M (eds) Mediterranean marine benthos: a manual of methods for its sampling and study. Societa Italiana di Biologia Marina, Genova, pp 1–37Maldonado M, Carmona MC, Echeverría Y, Riesgo A (2005) The environmental impact of Mediterranean cage fish farms at semi-exposed locations: does it need a re-assessment? Helgol Mar Res 59:121–135Mantzavrakos E, Kornaros M, Lyberatos G, Kaspiris P (2007) Impacts of a marine fish farm in Argolikos Gulf (Greece) on the water column and the sediment. Desalination 210:110–124Mazzola A, Mirto S, La Rosa T, Fabiano M, Danovaro R (2000) Fish-farming effects on benthic community structure in coastal sediments: analysis of meiofaunal recovery. ICES J Mar Sci 57:1454–1461Molina L, Vergara JM (2005) Impacto ambiental de jaulas flotantes: estado actual de conocimientos y conclusiones prácticas. Bol Inst Esp Oceanogr 21:75–81Morán XAG, Estrada M (2005) Winter pelagic photosynthesis in the NW Mediterranean Deep-Sea. Research I 52:1806–1822Neofitou N, Klaoudatos S (2008) Effect of fish farming on the water column nutrient concentration in a semi-enclosed gulf of the Eastern Mediterranean. Aquac Res 39:482–490Niencheski LF, Jahnke RA (2002) Benthic respiration and inorganic nutrient fluxes in the estuarine región of Patos Lagoon (Brazil). Aquat Geochem 8:135–152Nizzoli D, Bartoli M, Viaroli P (2007) Oxygen and ammonium dynamics during a farming cycle of the bivalve Tapes philippinarum. Hydrobiologia 587:25–36Pergent-Martini C, Boudouresque CF, Pasqualini V, Pergent G (2006) Impact of fish farming facilities on Posidonia oceanica meadows: a review. Mar Ecol 27:310–319Pitta P, Karakassis I, Tsapakis M, Zivanovic S (1999) Natural versus mariculture induced variability in nutrients and plankton in the Eastern Mediterranean. Hydrobiologia 391:181–194Redfield AC, Ketchum BH, Richards FA (1963) The influence of organisms on the composition of seawater. In: Hill MN (ed) The sea, vol 2. Interscience, New YorkRiise JC, Roos N (1997) Benthic metabolism and the effects of bioturbation in a fertilized polyculture fish pond in northeast Thailand. Aquaculture 150:45–62Rodríguez J (1999) Ecología. Ed. Pirámide. pp 411Sakamaki T, Nishimura O, Sudo R (2006) Tidal time-scale variation in nutrient flux across the sediment-water interface of an estuarine tidal flat. Estuar Coast Shelf Sci 67:653–663Sarà G, Scilipoti D, Milazzo M, Modica A (2006) Use of stable isotopes to investigate dispersal of waste from fish farms as a function of hydrodynamics. Mar Ecol Prog Ser 313:261–270Shepard FP (1954) Nomenclature based on sand-silt-clay relations. J Sediment Petrol 24:151–158Siokou-Frangou I, Christaki U, Mazzocchi MG, Montresor M, Ribera d’Alcalá M, Vaqué D, Zingone A (2010) Plankton in the open Mediterranean Sea: a review. BG 7:1543–1586Warnken KW, Gill GA, Lehman R, Dellapenna T, Allison MA (2002) The effects of shrimp trawling on sediment oxygen demand and the release of trace metals and nutrients from estuarine sediments. Estuar Coast Shelf Sci 57:25–42Yucel-Gier G, Kucuksezgin F, Kocak F (2007) Effects of fish farming on nutrients and benthic community structure in the Eastern Aegean (Turkey). Aquac Res 38:256–26

Measurement of the J/ψ\psi photoproduction cross section over the full near-threshold kinematic region

We report the total and differential cross sections for $J/\psi$ photoproduction with the large acceptance GlueX spectrometer for photon beam energies from the threshold at 8.2~GeV up to 11.44~GeV and over the full kinematic range of momentum transfer squared, $t$. Such coverage facilitates the extrapolation of the differential cross sections to the forward ($t = 0$) point beyond the physical region. The forward cross section is used by many theoretical models and plays an important role in understanding $J/\psi$ photoproduction and its relation to the $J/\psi-$proton interaction. These measurements of $J/\psi$ photoproduction near threshold are also crucial inputs to theoretical models that are used to study important aspects of the gluon structure of the proton, such as the gluon Generalized Parton Distribution (GPD) of the proton, the mass radius of the proton, and the trace anomaly contribution to the proton mass. We observe possible structures in the total cross section energy dependence and find evidence for contributions beyond gluon exchange in the differential cross section close to threshold, both of which are consistent with contributions from open-charm intermediate states.Comment: 15 pages 18 figure

Metabolic responses to high pCO2 conditions at a CO2 vent site in juveniles of a marine isopod species assemblage

We are starting to understand the relationship between metabolic rate responses and species' ability to respond to exposure to high pCO2. However, most of our knowledge has come from investigations of single species. The examination of metabolic responses of closely related species with differing distributions around natural elevated CO2 areas may be useful to inform our understanding of their adaptive significance. Furthermore, little is known about the physiological responses of marine invertebrate juveniles to high pCO2, despite the fact they are known to be sensitive to other stressors, often acting as bottlenecks for future species success. We conducted an in situ transplant experiment using juveniles of isopods found living inside and around a high pCO2 vent (Ischia, Italy): the CO2 'tolerant' Dynamene bifida and 'sensitive' Cymodoce truncata and Dynamene torelliae. This allowed us to test for any generality of the hypothesis that pCO2 sensitive marine invertebrates may be those that experience trade-offs between energy metabolism and cellular homoeostasis under high pCO2 conditions. Both sensitive species were able to maintain their energy metabolism under high pCO2 conditions, but in C. truncata this may occur at the expense of [carbonic anhydrase], confirming our hypothesis. By comparison, the tolerant D. bifida appeared metabolically well adapted to high pCO2, being able to upregulate ATP production without recourse to anaerobiosis. These isopods are important keystone species; however, given they differ in their metabolic responses to future pCO2, shifts in the structure of the marine ecosystems they inhabit may be expected under future ocean acidification conditions

Benthic associations of the shallow hard bottoms off Terra Nova Bay, Ross Sea: zonation, biomass and population structure

Quantitative and semi-quantitative samples of phyto- and zoobenthic organisms were collected by SCUBA diving at five stations along a depth transect from 0.5-16 m on the shallow hard bottoms off Terra Nova Bay, Ross Sea, Antarctica. The benthic associations were dominated by two macroalgal species (Iridaea cordata and Phyllophora antarctica) and by few animal taxa (mainly polychaetes, molluscs and peracarid crustaceans). Distribution at the community and species levels revealed a well-defined zonation pattern as a function of depth, governed mainly by sea ice scouring and melting. Zonation of vagile fauna was also affected by the effects of covering and architecture of the two dominant macroalgae. Species richness and diversity were higher in the Phyllophora-associated community, where habitat complexity and sheltering were higher. The highest faunal abundance (over 82 000 ind.m(-2)) and biomass (macroalgae and fauna wet weight 2392 g m(-2)) were recorded at 2 m depth in association with the Iridaea covering, where the harsher environmental conditions select a few taxa. The biomass values, even if underestimates of the whole community standing crop, are among the highest recorded in shallow austral biotopes. An autoecological and demographic analysis of the most abundant animal species revealed for some species (e.g. Laevilitorina antarctica and Paramoera walkeri) a quite complex population structure with up to three size classes, including juveniles. In some species, the cohort of juveniles showed a well defined depth preference probably related to sheltering by the macroalgae. As a whole, the species analyzed showed various and contrasting reproductive strategies, despite the fact that the environmental conditions along the transect were relatively similar and quite selective

Depth and Seasonal Distribution of Some Groups of the Vagile Fauna of the Posidonia oceanica Leaf Stratum: Structural and Trophic Analyses

The taxonomical and trophic structures of the vagile fauna communities of the leaf stratum in a Posidonia oceanica meadow at Ischia (Gulf of Naples, Italy) were investigated at five stations along a depth gradient (1 to 25 m). Sampling was performed in July, November, February, and May. The analyzed groups - polychaetes, molluscs, tanaids, isopods, amphipods, and decapods - exhibited similar distributional trends in all seasons, with coenotic discontinuities occurring at well-defined depths. The same zonation pattern was produced by feeding-guild analysis. Eleven trophic groups were identified. The most abundant groups were: Herbivores, which were found mainly at the shallow stations; Herbivores-deposit feeders, which were widely distributed along the transect; Deposit feeders-carnivores, found mainly at the deep stations.This study suggests that in the Posidonia leaf stratum, herbivores and herbivores-deposit feeders, as consumers of epiphytic micro- and macroflora and deposited particulate organic matter, play an important role in the energy transfer from producers to higher trophic levels of the system

Feeding of the sparid fish Sarpa salpa in a seagrass ecosystem: Diet and carbon flux

In Revellata Bay (Gulf of Calvi, Corsica, France), the sparid fish Sarpa salpa L. is the main macro-consumer of Posidonia oceanica (L.) DELILE leaf. Stomach contents were analysed and C-13/C-12 isotopic ratios were measured in fish muscle and potential food sources (algae, P. oceanica leaf and its epiphytes) to determine their relative contribution to the fish diet. S. salpa has an age-related mixed diet: juveniles are plankton feeders, young, sub-adults and adults are herbivorous, and, the older the individuals, the higher the relative contribution of P. oceanica to the diet. Our results and former studies of carbon stocks and fluxes in the P. oceanica bed of Revellata Bay have enabled an estimation of the general impact of S. salpa grazing on infralittoral communities: the studied species consumes 24 g C.m-2.a(-1) from P. oceanica leaf, 4.8 from epiphytes and 13 from epilithic algae. The fish net production and biomass turnover in that zone have been estimated to be 1.2 g C.m(-2).a(-1) and 1.5 a(-1), respectively.Carbon Cycle in the Calvi Ba