Geochemical and ecological aspects of lower Frasnian pyrite-ammonoid level at Kostomłoty (Holy Cross Mountains, Poland)

The lower Frasnian (transitans Zone with Ancyrodella priamosica = MN 4 Zone) rhythmic basin succession of marly limestones and shales (upper Szydlówek Beds) at Kostomloty, western Holy CrossMts., Central Poland, contains a record of the transgressive-hypoxic Timan Event in this drowned part of southern Laurussian shelf. The unique facies consists of organic-rich marly shales and a distinctive pyritic, goniatite level, 1.6m thick. The faunal assemblage is dominated by pyritized shells of diminutivemollusks with cephalopods (including goniatites Epitornoceras and Acanthoclymenia), buchioline bivalves (Glyptohallicardia) and styliolinids. This interval is marked by moderately low Th/U ratios and pyrite framboid size distributions suggestive of dysoxic rather than permanent euxinic conditions. The scarcity of infauna and bioturbation resulted in finely laminated sedimentary fabrics, as well as the low diversity of the presumed pioneer benthos (mostly brachiopods). In the topmost part of the Szydlówek Beds, distinguished by the Styliolina coquina interbedded between limestone-biodetrital layers, the above geochemical proxies and C-isotope positive shift indicate a tendency to somewhat increased bottom oxygen deficiency and higher carbon burial rate linked with a bloom of pelagic biota during high-productivity pulse. The geochemical and community changes are a complex regional record of the initial phase of a major perturbation in the earth-ocean system during a phase of intermittently rising sea level in the early to middle Frasnian, and associated with the highest positive C-isotope ratios of the Devonian

Transmission Distortion of MCT1 rs1049434 among Polish Elite Athletes

Background: To date, nearly 300 genetic markers were linked to endurance and power/strength traits. The current study aimed to compare genotype distributions and allele frequencies of the common polymorphisms: MCT1 rs1049434, NRF2 rs12594956, MYBPC3 rs1052373 and HFE rs1799945 in Polish elite athletes versus nonathletes. Methods: The study involved 101 male elite Polish athletes and 41 healthy individuals from the Polish population as a control group. SNP data were extracted from whole-genome sequencing (WGS) performed using the following parameters: paired reads of 150 bps, at least 90 Gb of data per sample with 300 M reads and 30x mean coverage. Results: All the analyzed polymorphisms conformed to Hardy-Weinberg equilibrium (HWE) in athletes and the control group, except the MCT1 rs1049434, where allele T was over-represented in the elite trainers' group. No significant between-group differences were found for analyzed polymorphisms. Conclusions: The MCT1 rs1049434 transmission distortion might be characteristic of Polish athletes and the effect of strict inclusion criteria. This result and the lack of statistically significant changes in the frequency of other polymorphisms between the groups might result from the small group size

Can energy self‑sufficiency be achieved? Case study of Warmińsko‑Mazurskie Voivodeship (Poland)

An analysis was carried out to show whether the Warmińsko-Mazurskie Voivodeship (Poland) could become energy selfsufficient. The technical potential of electricity and heat from renewable sources has been calculated. The calculated values are 6.93 TWh/year of electricity and 15.84 PJ/year of heat—these amounts would ensure the energy independence of the Voivodeship. The Warmińsko-Mazurskie Voivodeship is an example of transformation towards “green” energy, it shows that such transformation is also possible in Poland even in short term. This would reduce air pollution as well as limit the import of energy resources. It is very important, it allows us to think with optimism and implement Poland’s energy transformation towards renewable energy (RE). Additionally, a SWOT analysis of each type of RE in the Warmińsko-Mazurskie Voivodeship was presented. The SWOT analysis makes it possible to identify the strengths, weaknesses, prospects and threats for RE in the Voivodeship and the whole country. It has been found that there is a great interest of investors in RE in the Voivodeship, there is usually a great public support for new energy sources, and the biggest barriers are high investment costs and complicated law in Poland

SYSGENET: a meeting report from a new European network for systems genetics

The first scientific meeting of the newly established European SYSGENET network took place at the Helmholtz Centre for Infection Research (HZI) in Braunschweig, April 7-9, 2010. About 50 researchers working in the field of systems genetics using mouse genetic reference populations (GRP) participated in the meeting and exchanged their results, phenotyping approaches, and data analysis tools for studying systems genetics. In addition, the future of GRP resources and phenotyping in Europe was discussed

Initial characteristics of RbcX proteins from Arabidopsis thaliana

Form I of Rubisco (ribulose-1,5-bisphosphate carboxylase/oxygenase) is composed of eight large (RbcL) and eight small (RbcS) subunits. Assembly of these subunits into a functional holoenzyme requires the assistance of additional assembly factors. One such factor is RbcX, which has been demonstrated to act as a chaperone in the assembly of most cyanobacterial Rubisco complexes expressed in heterologous system established in Escherichia coli cells. Analysis of Arabidopsis thaliana genomic sequence revealed the presence of two genes encoding putative homologues of cyanobacterial RbcX protein: AtRbcX1 (At4G04330) and AtRbcX2 (At5G19855). In general, both RbcX homologues seem to have the same function which is chaperone activity during Rubisco biogenesis. However, detailed analysis revealed slight differences between them. AtRbcX2 is localized in the stromal fraction of chloroplasts whereas AtRbcX1 was found in the insoluble fraction corresponding with thylakoid membranes. Search for putative “partners” using mass spectrometry analysis suggested that apart from binding to RbcL, AtRbcX1 may also interact with β subunit of chloroplast ATP synthase. Quantitative RT-PCR analysis of AtRbcX1 and AtRbcX2 expression under various stress conditions indicated that AtRbcX2 is transcribed at a relatively stable level, while the transcription level of AtRbcX1 varies significantly. In addition, we present the attempts to elucidate the secondary structure of AtRbcX proteins using CD spectroscopy. Presented results are the first known approach to elucidate the role of RbcX proteins in Rubisco assembly in higher plants

An Analysis of Enzyme Kinetics Data for Mitochondrial DNA Strand Termination by Nucleoside Reverse Transcription Inhibitors

Nucleoside analogs used in antiretroviral treatment have been associated with mitochondrial toxicity. The polymerase-γ hypothesis states that this toxicity stems from the analogs' inhibition of the mitochondrial DNA polymerase (polymerase-γ) leading to mitochondrial DNA (mtDNA) depletion. We have constructed a computational model of the interaction of polymerase-γ with activated nucleoside and nucleotide analog drugs, based on experimentally measured reaction rates and base excision rates, together with the mtDNA genome size, the human mtDNA sequence, and mitochondrial dNTP concentrations. The model predicts an approximately 1000-fold difference in the activated drug concentration required for a 50% probability of mtDNA strand termination between the activated di-deoxy analogs d4T, ddC, and ddI (activated to ddA) and the activated forms of the analogs 3TC, TDF, AZT, FTC, and ABC. These predictions are supported by experimental and clinical data showing significantly greater mtDNA depletion in cell culture and patient samples caused by the di-deoxy analog drugs. For zidovudine (AZT) we calculated a very low mtDNA replication termination probability, in contrast to its reported mitochondrial toxicity in vitro and clinically. Therefore AZT mitochondrial toxicity is likely due to a mechanism that does not involve strand termination of mtDNA replication

Plasma Corticosterone Activates SGK1 and Induces Morphological Changes in Oligodendrocytes in Corpus Callosum

Repeated stressful events are known to be associated with onset of depression. Further, stress activates the hypothalamic–pituitary–adrenocortical (HPA) system by elevating plasma cortisol levels. However, little is known about the related downstream molecular pathway. In this study, by using repeated water-immersion and restraint stress (WIRS) as a stressor for mice, we attempted to elucidate the molecular pathway induced by elevated plasma corticosterone levels. We observed the following effects both, in vivo and in vitro: (1) repeated exposure to WIRS activates the 3-phosphoinositide-dependent protein kinase (PDK1)–serum glucocorticoid regulated kinase (SGK1)–N-myc downstream-regulated gene 1 (NDRG1)–adhesion molecule (i.e., N-cadherin, α-catenin, and β-catenin) stabilization pathway via an increase in plasma corticosterone levels; (2) the activation of this signaling pathway induces morphological changes in oligodendrocytes; and (3) after recovery from chronic stress, the abnormal arborization of oligodendrocytes and depression-like symptoms return to the control levels. Our data strongly suggest that these abnornalities of oligodendrocytes are possibly related to depression-like symptoms