The prospect of creating farm animal probiotics based on genetically modified Escherichia coli strains

The study was carried out in the framework of the scientific project № С-26/792 and the State assignment АААА-А19-119112290009-1

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Bacterial type IV secretion systems (T4SSs) comprise a diverse transporter family functioning in conjugation, competence, and effector molecule (DNA and/or protein) translocation. Thirteen genome sequences from Rickettsia, obligate intracellular symbionts/pathogens of a wide range of eukaryotes, have revealed a reduced T4SS relative to the Agrobacterium tumefaciens archetype (vir). However, the Rickettsia T4SS has not been functionally characterized for its role in symbiosis/virulence, and none of its substrates are known.Superimposition of T4SS structural/functional information over previously identified Rickettsia components implicate a functional Rickettsia T4SS. virB4, virB8 and virB9 are duplicated, yet only one copy of each has the conserved features of similar genes in other T4SSs. An extraordinarily duplicated VirB6 gene encodes five hydrophobic proteins conserved only in a short region known to be involved in DNA transfer in A. tumefaciens. virB1, virB2 and virB7 are newly identified, revealing a Rickettsia T4SS lacking only virB5 relative to the vir archetype. Phylogeny estimation suggests vertical inheritance of all components, despite gene rearrangements into an archipelago of five islets. Similarities of Rickettsia VirB7/VirB9 to ComB7/ComB9 proteins of epsilon-proteobacteria, as well as phylogenetic affinities to the Legionella lvh T4SS, imply the Rickettsiales ancestor acquired a vir-like locus from distantly related bacteria, perhaps while residing in a protozoan host. Modern modifications of these systems likely reflect diversification with various eukaryotic host cells.We present the rvh (Rickettsiales vir homolog) T4SS, an evolutionary conserved transporter with an unknown role in rickettsial biology. This work lays the foundation for future laboratory characterization of this system, and also identifies the Legionella lvh T4SS as a suitable genetic model

Detection of conjugation related type four secretion machinery in Aeromonas culicicola

BACKGROUND: Aeromonas sp. can now be considered relatively common enteropathogens due to the increase of diseases in humans. Aeromonas culicicola is a gram negative rod-shaped bacterium isolated for the first time from the mosquito mid-gut, but subsequently detected in other insects and waters also. Our previous study discovered that A. culicicola harbors three plasmids, which we designated as pAc3249A, pAc3249B and pAc3249C. We investigated and report here the existence and genetic organization of a Conjugal Type IV Secretion System (TFSS) in pAc3249A. METHODOLOGY/PRINCIPLE FINDING: The complete operon is 11,061 bp in length and has G+C content of 47.20% code for 12 ORFs. The gene order and orientation were similar to those found in other bacteria with some differences. We have designated this system as AcTra for Aeromonas culicicola transfer system. BLAST results of ORFs and phylogenetic analysis showed significant similarity towards the respective proteins of the IncI2 plasmid R721 of E. coli. Other bioinformatics studies have been performed to predict conserved motifs/domains, signal peptides, transmembrane helices, etc. of the ORFs. CONCLUSIONS/SIGNIFICANCE: BLAST results of ORFs and phylogenetic analysis showed significant similarity towards the respective proteins of the IncI2 plasmid R721 of E. coli

Microbial induced acid corrosion from a field perspective - Advances in process understanding and construction material development

Microbial induced acid corrosion is accounted for ~40 % of the degradation of subsurface wastewater infrastructure globally. While fundamental process understanding has increased significantly within the last decades, to date no sustainable building material exists, which meets the long-term requirements in such aggressive and corrosive environments. This work describes a novel model based on field studies, conducted in various Austrian sewer networks, intertwining biological, mineralogical and hydro-chemical factors. Additionally, an extensive field testing campaign over the duration of 18 months, conducted on different geopolymer concretes (GPC), particularly designed for the latter environments will be presented. Innovative GPCs were tested regarding their microstructural behavior, microbial accessibility and hydro-chemical alterations over time and compared to commercially produced cement based products, including OPC and CAC concretes. Additionally, the system specific environmental parameters, such as relevant gas concentrations (H2S, CO2, CH4), relative humidity and temperature were constantly monitored

Microbial Induced Acid Corrosion from a Field Perspective - Advances in Process Understanding and Construction Material Development

Microbial induced acid corrosion is accounted for ~40 % of the degradation of subsurface wastewater infrastructure globally. While fundamental process understanding has increased significantly within the last decades, to date no sustainable building material exists, which meets the long-term requirements in such aggressive and corrosive environments. This work describes a novel model based on field studies, conducted in various Austrian sewer networks, intertwining biological, mineralogical and hydro-chemical factors. Additionally, an extensive field testing campaign over the duration of 18 months, conducted on different geopolymer concretes (GPC), particularly designed for the latter environments will be presented. Innovative GPCs were tested regarding their microstructural behavior, microbial accessibility and hydro-chemical alterations over time and compared to commercially produced cement based products, including OPC and CAC concretes. Additionally, the system specific environmental parameters, such as relevant gas concentrations (H2S, CO2, CH4), relative humidity and temperature were constantly monitored

Structures of two core subunits of the bacterial type IV secretion system, VirB8 from Brucella suis and ComB10 from Helicobacter pylori

Type IV secretion systems (T4SSs) are commonly used secretion machineries in Gram-negative bacteria. They are used in the infection of human, animal, or plant cells and the propagation of antibiotic resistance. The T4SS apparatus spans both membranes of the bacterium and generally is composed of 12 proteins, named VirB1–11 and VirD4 after proteins of the canonical Agrobacterium tumefaciens T4SS. The periplasmic core complex of VirB8/VirB10 structurally and functionally links the cytoplasmic NTPases of the system with its outer membrane and pilus components. Here we present crystal structures of VirB8 of Brucella suis, the causative agent of brucellosis, and ComB10, a VirB10 homolog of Helicobacter pylori, the causative agent of gastric ulcers. The structures of VirB8 and ComB10 resemble known folds, albeit with novel secondary-structure modifications unique to and conserved within their respective families. Both proteins crystallized as dimers, providing detailed predictions about their self associations. These structures make a substantial contribution to the repertoire of T4SS component structures and will serve as springboards for future functional and protein–protein interaction studies by using knowledge-based site-directed and deletion mutagenesis