The Impact of Shape on the Perception of Euler Diagrams

Euler diagrams are often used for visualizing data collected into sets. However, there is a significant lack of guidance regarding graphical choices for Euler diagram layout. To address this deficiency, this paper asks the question `does the shape of a closed curve affect a user's comprehension of an Euler diagram?' By empirical study, we establish that curve shape does indeed impact on understandability. Our analysis of performance data indicates that circles perform best, followed by squares, with ellipses and rectangles jointly performing worst. We conclude that, where possible, circles should be used to draw effective Euler diagrams. Further, the ability to discriminate curves from zones and the symmetry of the curve shapes is argued to be important. We utilize perceptual theory to explain these results. As a consequence of this research, improved diagram layout decisions can be made for Euler diagrams whether they are manually or automatically drawn

Synthesis and self-assembly of polyimide/poly(dimethylsiloxane) brush triblock copolymers

A series of novel brush triblock copolymers containing 'glassy' fluorinated polyimide, poly((4,4'-hexafluoroisopropylidene diphthalic anhydride)-co-(2,3,5,6-tetramethyl-1,4-phenylenediamine)) (poly(6FDA-co-TMPD)), and 'rubbery' polydimethylsiloxane monomethacrylate (PDMS-MA) were synthesized and characterized. Well-defined difunctional poly(6FDA-co-TMPD) with a,w-amino end-groups was initially prepared via step-growth polymerization using precise control of the diamine (TMPD) to dianhydride (6FDA) ratio. Subsequent functionalization with 2-bromoisobutyryl bromide afforded a telechelic macroinitiator suitable for atom transfer radical polymerization (ATRP). The macroinitiator and its diamino poly(6FDA-co-TMPD) precursor were characterized via gel permeation chromatography (GPC), 1H nuclear magnetic resonance (NMR) spectroscopic analysis and matrix assisted laser desorption ionization time-of-flight (MALDI ToF) mass spectroscopy. ATRP of PDMS-MA using the macroinitiator in different molar ratios afforded a series of brush triblock copolymers with high monomer conversions (88-94%) and varying PDMS weight fractions. Self-assembly of the triblock brush copolymers in dimethylformamide (DMF) afforded nanoparticles with hydrodynamic diameters (dH) ranging from 87 to 109 nm, as determined by dynamic light scattering (DLS) analysis. Cross-linking of the nanoparticles was achieved via hydrogen abstraction through the thermal degradation of benzoyl peroxide. Transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) revealed that the self-assemblies and their cross-linked derivatives had spherical morphologies

Hyper-Raman scattering analysis of the vibrations in vitreous boron oxide

Hyper-Raman scattering has been measured on vitreous boron oxide, $v-$B$_2$O$_3$. This spectroscopy, complemented with Raman scattering and infrared absorption, reveals the full set of vibrations that can be observed with light. A mode analysis is performed based on the local D$_{3h}$ symmetry of BO$_3$ triangles and B$_3$O$_3$ boroxol rings. The results show that in $v-$B$_2$O$_3$ the main spectral components can be succesfully assigned using this relatively simple model. In particular, it can be shown that the hyper-Raman boson peak arises from external modes that correspond mainly to librational motions of rigid boroxol rings.Comment: 13 pages, 11 figures, 2 table

Validation of Reference Genes for Robust qRT-PCR Gene Expression Analysis in the Rice Blast Fungus Magnaporthe oryzae

This is the final version of the article. Available from Public Library of Science via the DOI in this record.The rice blast fungus causes significant annual harvest losses. It also serves as a genetically-tractable model to study fungal ingress. Whilst pathogenicity determinants have been unmasked and changes in global gene expression described, we know little about Magnaporthe oryzae cell wall remodelling. Our interests, in wall remodelling genes expressed during infection, vegetative growth and under exogenous wall stress, demand robust choice of reference genes for quantitative Real Time-PCR (qRT-PCR) data normalisation. We describe the expression stability of nine candidate reference genes profiled by qRT-PCR with cDNAs derived during asexual germling development, from sexual stage perithecia and from vegetative mycelium grown under various exogenous stressors. Our Minimum Information for Publication of qRT-PCR Experiments (MIQE) compliant analysis reveals a set of robust reference genes used to track changes in the expression of the cell wall remodelling gene MGG_Crh2 (MGG_00592). We ranked nine candidate reference genes by their expression stability (M) and report the best gene combination needed for reliable gene expression normalisation, when assayed in three tissue groups (Infective, Vegetative, and Global) frequently used in M. oryzae expression studies. We found that MGG_Actin (MGG_03982) and the 40S 27a ribosomal subunit MGG_40s (MGG_02872) proved to be robust reference genes for the Infection group and MGG_40s and MGG_Ef1 (Elongation Factor1-α) for both Vegetative and Global groups. Using the above validated reference genes, M. oryzae MGG_Crh2 expression was found to be significantly (p<0.05) elevated three-fold during vegetative growth as compared with dormant spores and two fold higher under cell wall stress (Congo Red) compared to growth under optimal conditions. We recommend the combinatorial use of two reference genes, belonging to the cytoskeleton and ribosomal synthesis functional groups, MGG_Actin, MGG_40s, MGG_S8 (Ribosomal subunit 40S S8) or MGG_Ef1, which demonstrated low M values across heterogeneous tissues. By contrast, metabolic pathway genes MGG_Fad (FAD binding domain-containing protein) and MGG_Gapdh (Glyceraldehyde-3-phosphate dehydrogenase) performed poorly, due to their lack of expression stability across samples.We acknowledge funding from Khazanah Foundation in support of SCO, BBSRC grant BB/J008923/1 awarded to SG and we thank Eleanor Jaskowska for her assistance in tissue preparation. Neither funder played a role in study design, data collection, analysis, decision to publish or manuscript preparation

Crosslinked Polypeptide Films via RAFT-Mediated Continuous Assembly of Polymers

Polypeptide coatings are a cornerstone in the field of surface modification due to their widespread biological potential. As their properties are dictated by their structural features, subsequent control thereof using unique fabrication strategies is important. Herein, we report a facile method of precisely creating densely crosslinked polypeptide films with unusually high random coil content through continuous assembly polymerization via reversible addition–fragmentation chain transfer (CAP‐RAFT). CAP‐RAFT was fundamentally investigated using methacrylated poly‐l‐lysine (PLLMA) and methacrylated poly‐l‐glutamic acid (PLGMA). Careful technique refinement resulted in films up to 36.1±1.1 nm thick which could be increased to 94.9±8.2 nm after using this strategy multiple times. PLLMA and PLGMA films were found to have 30–50 % random coil conformations. Degradation by enzymes present during wound healing reveals potential for applications in drug delivery and tissue engineering

Cliophysics: Socio-political Reliability Theory, Polity Duration and African Political (In)stabilities

Quantification of historical sociological processes have recently gained attention among theoreticians in the effort of providing a solid theoretical understanding of the behaviors and regularities present in sociopolitical dynamics. Here we present a reliability theory of polity processes with emphases on individual political dynamics of African countries. We found that the structural properties of polity failure rates successfully capture the risk of political vulnerability and instabilities in which 87.50%, 75%, 71.43%, and 0% of the countries with monotonically increasing, unimodal, U-shaped and monotonically decreasing polity failure rates, respectively, have high level of state fragility indices. The quasi-U-shape relationship between average polity duration and regime types corroborates historical precedents and explains the stability of the autocracies and democracies.Comment: 4 pages, 3 figures, 1 tabl

Active diffusion and microtubule-based transport oppose myosin forces to position organelles in cells.

Even distribution of peroxisomes (POs) and lipid droplets (LDs) is critical to their role in lipid and reactive oxygen species homeostasis. How even distribution is achieved remains elusive, but diffusive motion and directed motility may play a role. Here we show that in the fungus Ustilago maydis ∼95% of POs and LDs undergo diffusive motions. These movements require ATP and involve bidirectional early endosome motility, indicating that microtubule-associated membrane trafficking enhances diffusion of organelles. When early endosome transport is abolished, POs and LDs drift slowly towards the growing cell end. This pole-ward drift is facilitated by anterograde delivery of secretory cargo to the cell tip by myosin-5. Modelling reveals that microtubule-based directed transport and active diffusion support distribution, mobility and mixing of POs. In mammalian COS-7 cells, microtubules and F-actin also counteract each other to distribute POs. This highlights the importance of opposing cytoskeletal forces in organelle positioning in eukaryotes.We thank Dr G. Dagdas, Dr S. Kilaru, Mr M. Schlick and Mrs T. Schrader for technical support. We thank Professor N.J. Talbot for helpful comments on the manuscript. This work was supported by the Biotechnology & Biological Sciences Research Council (BB/J009903/1 to G.S.). S.C.G. was supported by a fellowship from the Portuguese Foundation for Science and Technology (FCT) (SFRH/BD/73532/2010). J.M. is supported by a Wellcome Trust Institutional Strategic Support Award (WT097835MF)

Confocal Fluorescence Ratio Imaging of Ion Activities in Plant Cells

Fluorescent probes allow measurement of dynamic changes of calcium and pH in living cells. Imaging using confocal scanning laser microscopy provides a route to spatially map these dynamics over time in single optical sections or in 3-D images. We have developed a dual-excitation confocal system to allow ratio measurements of pH and calcium, that compensate for changes in dye distribution, leakage and photobleaching. Application of these techniques to plant tissues is complicated by the difficulty in loading the tissues with dye. We describe a new technique to assist dye loading in intact leaves of Lemna using a pre-treatment with cutinase. Once within plant tissues, many dyes compartmentalise into the vacuole. We report the use of chloromethylfluorescein diacetate as an alternative to BCECF [2\u27 ,7\u27-bis-(2-carboxyethyl)-5-(and 6)carboxyfluorescein] as a pH probe with greater cytoplasmic retention times. In addition, the confocal system allowed discrimination of signals from different compartments and permitted simultaneous measurement of vacuolar and cytoplasmic pH ratios in epidermal strips from Hordeum. We have developed a series of software tools to extract quantitative data from multi-dimensional images and illustrate these approaches with reference to pollen tube growth in Lilium and peptide-evoked changes in pH and calcium in stomata! guard cells from Commelina and Vicia

Who is to blame? The relationship between ingroup identification and relative deprivation is moderated by ingroup attributions

Contradictory evidence can be found in the literature about whether ingroup identification and perceived relative deprivation are positively or negatively related. Indeed, theoretical arguments can be made for both effects. It was proposed that the contradictory findings can be explained by considering a hitherto unstudied moderator: The extent to which deprivation is attributed to the ingroup. It was hypothesised that identification would only have a negative impact on deprivation, and that deprivation would only have a negative impact on identification, if ingroup attributions are high. To test this, attributions to the ingroup were experimentally manipulated among British student participants (N = 189) who were asked about their perceived deprivation vis-à-vis German students, yield ing support for the hypotheses