CPR EOV Report: Ecological EOV syntheses and impact of AtlantOS observations

Report on biological EOVs using newly defined habitats of the North Atlanti

Understanding long-term changes in species abundance using a niche-based approach.

One of the major challenges to understanding population changes in ecology for assessment purposes is the difficulty in evaluating the suitability of an area for a given species. Here we used a new simple approach able to faithfully predict through time the abundance of two key zooplanktonic species by focusing on the relationship between the species' environmental preferences and their observed abundances. The approach is applied to the marine copepods Calanus finmarchicus and C. helgolandicus as a case study characterising the multidecadal dynamics of the North Sea ecosystem. We removed all North Sea data from the Continuous Plankton Recorder (CPR) dataset and described for both species a simplified ecological niche using Sea Surface Temperature (SST) and CPR Phytoplankton Colour Index (PCI). We then modelled the dynamics of each species by associating the North Sea's environmental parameters to the species' ecological niches, thus creating a method to assess the suitability of this area. By using both C. finmarchicus and C. helgolandicus as indicators, the procedure reproduces the documented switches from cold to warm temperate states observed in the North Sea

The impact of environmental variability on Atlantic mackerel Scomber scombrus larval abundance to the west of the British Isles

The value of the Continuous Plankton Recorder (CPR) fish larvae dataset, with its extensive spatio-temporal coverage, has been recently demonstrated with studies on long-term changes over decadal scales in the abundance and distribution of fish larvae in relation to physical and biological factors in the North Sea. We used a similar approach in the west and southwest area of the UK shelf and applied a principal component analysis (PCA) using 7 biotic and abiotic parameters, combined with Hierarchical Cluster Analysis (HCA), to investigate the impact of environmental changes in the west and southwest area of the UK shelf on mackerel larvae during the period 1960–2004. The analysis revealed 3 main periods of time (1960–1968; 1969–1994; 1995–2004) reflecting 3 different ecosystem states. The results suggest a transition from an ecosystem characterized by low temperature, high salinity, high abundances of zooplankton and the larger phytoplankton groups, to a system characterized by higher temperature, lower salinities, lower abundances of zooplankton and larger phytoplankton and higher abundances of the small phytoplankton species. Analysis revealed a very weak positive correlation between the Second principal component and mackerel larvae yearly abundance, attributed to the North Atlantic Oscillation (NAO). The results presented here are in broad accord with recent investigations that link climatic variability and dynamics of mackerel reproduction. However, the growing body of literature that documents statistical correlations between environment and mackerel needs to be supplemented by local process studies, to gain more insight and to be able to predict mackerel response to climate change scenarios. Utilising the strength of the CPR dataset, namely its unique temporal coverage, in an analysis where other data (such as egg surveys) are drawn in to compensate for the spatial issues could prove to be the way forward

The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species

The ecological niche sensu Hutchinson is defined as the set of environmental conditions allowing a species to grow, maintain, and reproduce. This conception of the niche, which is assimilated to a p-dimensional hypervolume, with p representing all environmental variables, has been widely applied in ecology. However, displaying the niche hypervolume has proved challenging when more than three environmental dimensions are considered simultaneously. We propose a simple method (implemented in the specieschrom R package) that displays the full multidimensionality of the ecological niche of a species into a two-dimensional space by means of a graphic we call species chromatogram. This method gives a graphical summary of the niche by representing together abundance gradients with respect to all environmental variables. A chromatogram enables niche optimums and breaths to be rapidly quantified, and when several chromatograms are examined (one per species), rapid comparisons can be made. From our chromatograms, we proposed a procedure that quantifies niche optimum and breadth as well as niche overlapping (index D) and the identification of the most discriminant combination of environmental variables. We apply these analyses on eight planktonic species collected by the Continuous Plankton Recorder (CPR) survey in the North Atlantic Ocean using 10 environmental variables. We display their full multidimensional niches and quantify their niche optimums and breadths along each dimension. We also compare our index D with other indices by means of hypervolume and dynRB R packages. By catching the full complexity of the niche, species chromatograms allow many different niche properties to be rapidly assessed and compared among species from niche optimums and breadths to the identification of the most relevant environmental parameters and the degree of niche overlapping among species. Species chromatograms may be seen as species’ fingerprint and may also allow a better identification of the mechanisms involved in species assembly

All plankton sampling systems underestimate abundance: Response to “Continuous plankton recorder underestimates zooplankton abundance” by J.W. Dippner and M. Krause

International audienceIt is axiomatic in plankton research that no plankton sampler, or combination of plankton samplers, can provide a true estimate of abundance for all components of the plankton at anytime. Plankton vary in size from the microbic to large ctenophores and jellyfish, from robust to those extremely fragile and almost impossible to catch without damage. Plankton have extremely diverse behavioural patterns, daily and seasonal vertical migration, and different feeding, reproductive, survival and escape strategies. Even within the crustacean mesozooplankton abundances vary in four dimensions. Consequently, it has been necessary to develop numerous different types of sampling systems, and different mesh sizes have been used, in order to capture or observe the various components of plankton. Wiebe and Benfield (2003) listed more than 200 systems and that is not exhaustive. All systems underestimate parts of or all the plankton leading researchers to choose the system most suited to their study..

An ecological partition of the Atlantic Ocean and its adjacent seas

In the past, partitions of the global ocean have been commonly carried out using relatively few environmental or biological variables. Although such partitions are undoubtedly useful on a global scale, we show that, at a basin scale, the use of a large number of biological variables greatly improves the accuracy of a partition. We first determined pelagic habitats using a set of selected environmental variables such as temperature, bathymetry, light at the seabed, sea ice concentration, current velocity and salinity. We then partitioned the North Atlantic Ocean and its adjacent seas at spatial resolutions of 2° latitude × 2° longitude and 0.5° × 0.5° using biological data from the Continuous Plankton Recorder (CPR survey). We used a total of 238 plankton species or taxa sampled between 1946 and 2015 representing more than 60 million data points. Finally, we combined the three biogeographies together to propose a new ecological partition of the North Atlantic and its adjacent seas into Ecological Units (EUs) and ecoregions. The comparison of our partition with the biogeochemical biogeography proposed by Longhurst reveals substantial differences in the location and size of biomes and provinces, especially over the continental shelf. In particular, boundaries of three known biomes (i.e. westerlies, polar and continental shelves biomes) differ substantially from the global-scale classification

Plankton biogeography in the North Atlantic Ocean and its adjacent seas: Species assemblages and environmental signatures

Plankton biodiversity is a key component of marine pelagic ecosystems. They are at the base of the food web, control the productivity of marine ecosystems, and provide many provisioning and regulating ecological services. It is therefore important to understand how plankton are organized in both space and time. Here, we use data of varying taxonomic resolution, collected by the Continuous Plankton Recorder (CPR) survey, to map phytoplankton and zooplankton biodiversity in the North Atlantic and its adjacent seas. We then decompose biodiversity into 24 species assemblages and investigate their spatial distribution using ecological units and ecoregions recently proposed. Finally, we propose a descriptive method, which we call the environmental chromatogram, to characterize the environmental signature of each plankton assemblage. The method is based on a graphic that identifies where species of an assemblage aggregate along an environmental gradient composed of multiple ecological dimensions. The decomposition of the biodiversity into species assemblages allows us to show (a) that most marine regions of the North Atlantic are composed of coenoclines (i.e., gradients of biocoenoses or communities) and (b) that the overlapping spatial distribution of assemblages is the result of their environmental signatures. It follows that neither the ecoregions nor the ecological units identified in the North Atlantic are characterized by a unique assemblage but instead by a mosaic of assemblages that overlap in many place

Seasonality and interannual variability of copepods in the Western English Channel, Celtic Sea, Bay of Biscay, and Cantabrian Sea with a special emphasis to Calanus helgolandicus and Acartia clausi

A total of five mesozooplankton time series data sets were assembled to compare the seasonal and interannual patterns of abundance of calanoid copepods in the Western English Channel (Station L4), Celtic Sea, Bay of Biscay (Continuous Plankton Recorder), and the Cantabrian Sea (RADIALES time series, Santander, St-4 and St-6) from January 1992 to December 1999. A strong seasonal component in taxonomic composition was detected at the locations considered. There was also a strong latitudinal effect on diversity at each location, southernmost locations being more diverse. The seasonal dynamics and year-to-year variability of two copepod species: Calanus helgolandicus and Acartia clausi were studied in detail. A latitudinal pattern in the seasonal cycles of both copepod species was observed. The peaks of both occur earlier in spring in the warmer southern region and move northwards, consistent with the temperature regimes at each location, supporting the broad concept that species occupy a thermal niche in time as well as in space. There was a strong degree of interannual variability between sites and between species. No clear trends, but some coherent events among data sets, reveal a regional response to environmental forcing factors. Correlations suggest possible connections with environmental indices like the North Atlantic Oscillation and the Gulf Stream North Wall index. There was a positive correlation between the NAO and the abundance of C. helgolandicus at station L4 off Plymouth; however, the relationship in the Celtic Sea and Bay of Biscay was opposite to that expected based on previous results. Despite the differences in the sampling techniques used within each dataset, the results are comparable and coherent in terms of taxonomic composition and the seasonal and interannual patterns detected