202 research outputs found
Deep Learning Based Parking Vacancy Detection for Smart Cities
Parking shortage is a major problem in modern cities. Drivers cruising in search of a parking space directly translate into frustration, traffic congestion, and excessive carbon emission. We introduce a simple and effective deep learning-based parking space notification (PSN) system to inform drivers of new parking availabilities and re-occupancy of the freed spaces. Our system is particularly designed to target areas with severe parking shortages (i.e., nearly all parking spaces are occupied), a situation that allows us to convert the problem of detecting parking vacancies into recognizing vehicles leaving from their stationary positions. Our PSN system capitalizes on a calibrated Mask R-CNN model and a unique adaptation of the IoU concept to track the changes of vehicle positions in a video stream. We evaluated PSN using videos from a CCTV camera installed at a private parking lot and publicly available YouTube videos. The PSN system successfully captured all new parking vacancies arising from leaving vehicles with no false positive detections. Prompt notification messages were sent to users via cloud messaging services
Stateful requirements monitoring for self-repairing socio-technical systems
Socio-technical systems consist of human, hardware and software components that work in tandem to fulfil stakeholder requirements. By their very nature, such systems operate under uncertainty as components fail, humans act in unpredictable ways, and the environment of the system changes. Self-repair refers to the ability of such systems to restore fulfillment of their requirements by relying on monitoring, reasoning, and diagnosing on the current state of individual requirements. Self-repair is complicated by the multi-agent nature of socio-technical systems, which demands that requirements monitoring and self-repair be done in a decentralised fashion. In this paper, we propose a stateful requirements monitoring approach by maintaining an instance of a state machine for each requirement, represented as a goal, with runtime monitoring and compensation capabilities. By managing the interactions between the state machines, our approach supports hierarchical goal reasoning in both upward and downward directions. We have implemented a customisable Java framework that supports experimentation by simulating a socio-technical system. Results from our experiments suggest effective and precise support for a wide range of self-repairing decisions in a socio-technical setting
4-Nitrophenyl α-l-rhamnopyranoside hemihydrate1
The absolute configuration of the title compound, C12H15NO7·0.5H2O, was assigned from the synthesis. There are two rhamnoside molecules and one water molecule in the asymmetric unit, displaying O—H⋯O hydrogen bonding. One of the nitro groups does not conjugate efficiently with the benzene ring
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SRSF2 Is Essential For Hematopoiesis and Its Mutations Dysregulate Alternative RNA Splicing In MDS
Abstract
Myelodysplastic syndromes (MDS) are a group of neoplasms that are ineffective in generating multiple lineages of myeloid cells and have various risks to progress to acute myeloid leukemia. Recent genome-wide sequencing studies reveal that mutations in genes of splicing factors are commonly associated with MDS. However, the importance of these splicing factors in hematopoiesis has been unclear and the causal effect of their mutations on MDS development remains to be determined. One of these newly identified genes is SRSF2, and its mutations have been linked to poor survival among MDS patients. Interestingly, most of SRSF2 mutations occur at proline 95 and the majority of these mutations change this proline to histidine (P95H). Given that SRSF2 is a well-characterized splicing factor involved in both constitutive and regulated splicing, we hypothesize that SRSF2 plays an important role in normal hematopoiesis and the SRSF2 mutations induce specific changes in alternative splicing that favor disease progression. We first examined the role of SRSF2 in hematopoiesis by generating Srsf2 null mutation in mouse blood cells via crossing conditional Srsf2 knockout mice (Srsf2f/f) with blood cell-specific Cre transgenic mice (Vav-Cre). The mutant mice produced significantly fewer definitive blood cells (10% of wild type controls), exhibited increased apoptosis in the remaining blood cells, and died during embryonic development. Importantly, we detected no hematopoietic stem/progenitor cells (lineage-/cKit+) in E14 fetal livers of Vav-Cre/Srsf2f/f mice. These results indicate that SRSF2 is essential for hematopoiesis during embryonic development. We next examined the role of SRSF2 in adult hematopoiesis by injecting polyIC into mice that carry a polyIC inducible Cre expression unit. Unexpectedly, after multiple polyIC treatments, the Srsf2f/f mice stayed alive during several months of observation. Time course genotyping analyses of polyIC treated mice revealed an increased rate of incomplete Srsf2 deletion in peripheral blood cells. These observations suggest that Srsf2 ablation did not cause immediate cell lethality in differentiated blood cells, but the gene is indispensable for the function of blood stem/progenitor cells. Since mutations of splicing factors are generally heterozygous in MDS patients, we also examined mice with Srsf2+/- blood cells. No obvious defect of hematopoiesis was observed under normal conditions or in response to stress with 5-FU treatment and sublethal irradiation. To gain molecular insight into the splicing activity of MDS-associated mutant forms of SRSF2, we performed large-scale alternative splicing surveys by using RNA-mediated oligonucleotide annealing, selection, and ligation coupled with next-generation sequencing (RASL-seq) previously developed in our lab, which offers a robust and cost-effective platform for splicing profiling. Compared to vector transduction controls, we found that overexpression of both wild type and P95H SRSF2 induced many, but distinct changes in alternative splicing in lineage-negative bone marrow cells, and importantly, we noted several changes in genes with known roles in hematopoietic malignancies that were uniquely induced by the mutant SRSF2. To further link the mutations to altered splicing in MDS patients, we also applied RASL-seq to a large number of MDS patient samples with or without mutations in SRSF2 or other splicing regulators. The data revealed a specific set of alternative splicing events that are commonly linked to MDS with splicing factor mutations. These findings strongly suggest that many of these mutations in splicing regulators are gain-of-function mutations that are causal to MDS. In conclusion, we report that SRSF2 plays an essential role in hematopoietic stem/progenitor cells and that the MDS-associated mutations in SRSF2 have a dominant effect on RNA alternative splicing. These findings provide functional information and molecular basis of SRSF2 and its MDS-related mutations in hematopoiesis and related clinical disorders.
Disclosures:
No relevant conflicts of interest to declare
Video Adverse-Weather-Component Suppression Network via Weather Messenger and Adversarial Backpropagation
Although convolutional neural networks (CNNs) have been proposed to remove
adverse weather conditions in single images using a single set of pre-trained
weights, they fail to restore weather videos due to the absence of temporal
information. Furthermore, existing methods for removing adverse weather
conditions (e.g., rain, fog, and snow) from videos can only handle one type of
adverse weather. In this work, we propose the first framework for restoring
videos from all adverse weather conditions by developing a video
adverse-weather-component suppression network (ViWS-Net). To achieve this, we
first devise a weather-agnostic video transformer encoder with multiple
transformer stages. Moreover, we design a long short-term temporal modeling
mechanism for weather messenger to early fuse input adjacent video frames and
learn weather-specific information. We further introduce a weather
discriminator with gradient reversion, to maintain the weather-invariant common
information and suppress the weather-specific information in pixel features, by
adversarially predicting weather types. Finally, we develop a messenger-driven
video transformer decoder to retrieve the residual weather-specific feature,
which is spatiotemporally aggregated with hierarchical pixel features and
refined to predict the clean target frame of input videos. Experimental
results, on benchmark datasets and real-world weather videos, demonstrate that
our ViWS-Net outperforms current state-of-the-art methods in terms of restoring
videos degraded by any weather condition
Estimation of chlorophyll concentration for environment monitoring in Scottish marine water.
Marine Scotland is tasked with reporting on the environmental status of Scottish marine waters, an enormous area of water extending from the shoreline to deep oceanic waters. As one of the most important variables, chlorophyll concentration (Chl) plays an important role in the seawater quality monitoring. Currently, the Chl observation is mostly done by expensive ship-based surveys that have very limited spatio-temporal coverage. Satellite based ocean colour remote sensing has the potential to significantly enhance monitoring capabilities but this opportunity has not been widely adopted by statutory reporting bodies across Europe due to concerns over satellite data quality. To break through this bottleneck, in this paper, we explore to implement advanced machine learning techniques to automatically estimate the Chl via the historic time series of ocean colour remote sensing data during from July 2002 to September 2019
High-free Fatty Acid Treatment Induced Anti-inflammatory Changes in a Natural Killer (NK) Cell Line
Background: Natural killer (NK) cells play a role in the pathogenesis of various metabolic diseases related to obesity. While our initial findings have indicated a potential involvement of NK cells in the pathogenesis of type 2 diabetes mellitus, the precise mechanism underlying NK cell-mediated development of this form of diabetes remains inadequately comprehended.Objective: To investigate the impact and the underlying mechanism of high glucose and elevated levels of free fatty acids (FFAs) on immune and inflammatory responses and oxidative stress in NK92 cells.Methods: In this experiment, the CCK8 cytotoxicity assay was used to select the 44.4 mM and 1.5 mM concentrations of high glucose and high FFAs, respectively, to treat NK92 cells for 4 days. The concentrations of superoxide dismutase (SOD) and glutathione (GSH) were determined using a biochemical analyzer. Intracellular reactive oxygen species (ROS) levels, cytokines concentrations (TNF-α, IFN-γ, IL-6, and IL-10), and the expression levels of intracellular molecules (perforin and granzyme B) were assessed by flow cytometry.Results: The number of NK92 cell clumps was significantly reduced in the high-FFA (HF) group. In addition, the production of ROS and levels of cytokines (TNF-α, IFN-γ, IL-6, and IL-10) significantly decreased in the HF group but showed no significant change in the high-glucose (HG) group. This observation was consistent with the expression levels of perforin and granzyme B that decreased in the HF group.Conclusion: High FFAs induced morphological changes and serious damage to oxidative stress and inflammatory response in NK92 cells
The Triplex BioValsalva Prostheses To Reconstruct the Aortic Valve and the Aortic Root
The Bentall procedure introduced in 1968 represents an undisputed cure to treat multiple pathologies involving the aortic valve and the ascending thoracic aorta. Over the years, multiple modifications have been introduced as well as a standardized approach to the operation with the goal to prevent long-term adverse events. The BioValsalva prosthesis provides a novel manner to more efficiently reconstruct the aortic valve together with the anatomy of the aortic root with the implantation of a valved conduit. This prosthesis comprises three sections: the collar supporting the valve; the skirt mimicking the Valsalva, which is suitable for the anastomoses with the coronary arteries; and the main body of the graft, which is designed to replace the ascending aorta. The BioValsalva prosthesis allows the Bentall operation to be used in patients whose aortic valve cannot be spared
Deep background subtraction of thermal and visible imagery for redestrian detection in videos
In this paper, we introduce an efficient framework to subtract the background from both visible and thermal imagery for pedestrians’ detection in the urban scene. We use a deep neural network (DNN) to train the background subtraction model. For the training of the DNN, we first generate an initial background map and then employ randomly 5% video frames, background map, and manually segmented ground truth. Then we apply a cognition-based post-processing to further smooth the foreground detection result. We evaluate our method against our previous work and 11 recently widely cited method on three challenge video series selected from a publicly available color-thermal benchmark dataset OCTBVS. Promising results have been shown that the proposed DNN-based approach can successfully detect the pedestrians with good shape in most scenes regardless of illuminate changes and occlusion problem
Dissecting the chromatin interactome of microRNA genes
Abstract
Our knowledge of the role of higher-order chromatin structures in transcription of microRNA genes (MIRs) is evolving rapidly. Here we investigate the effect of 3D architecture of chromatin on the transcriptional regulation of MIRs. We demonstrate that MIRs have transcriptional features that are similar to protein-coding genes. RNA polymerase II–associated ChIA-PET data reveal that many groups of MIRs and protein-coding genes are organized into functionally compartmentalized chromatin communities and undergo coordinated expression when their genomic loci are spatially colocated. We observe that MIRs display widespread communication in those transcriptionally active communities. Moreover, miRNA–target interactions are significantly enriched among communities with functional homogeneity while depleted from the same community from which they originated, suggesting MIRs coordinating function-related pathways at posttranscriptional level. Further investigation demonstrates the existence of spatial MIR–MIR chromatin interacting networks. We show that groups of spatially coordinated MIRs are frequently from the same family and involved in the same disease category. The spatial interaction network possesses both common and cell-specific subnetwork modules that result from the spatial organization of chromatin within different cell types. Together, our study unveils an entirely unexplored layer of MIR regulation throughout the human genome that links the spatial coordination of MIRs to their co-expression and function.</jats:p
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