Concerted evolution of duplicated mitochondrial control regions in three related seabird species

<p>Abstract</p> <p>Background</p> <p>Many population genetic and phylogenetic analyses of mitochondrial DNA (mtDNA) assume that mitochondrial genomes do not undergo recombination. Recently, concerted evolution of duplicated mitochondrial control regions has been documented in a range of taxa. Although the molecular mechanism that facilitates concerted evolution is unknown, all proposed mechanisms involve mtDNA recombination.</p> <p>Results</p> <p>Here, we document a duplication of a large region (cytochrome <it>b</it>, tRNA^Thr, tRNA^Pro, ND6, tRNA^Gluand the control region) in the mitochondrial genome of three related seabird species. To investigate the evolution of duplicate control regions, we sequenced both control region copies (CR1 and CR2) from 21 brown (<it>Sula leucogaster</it>), 21 red-footed (<it>S. sula</it>) and 21 blue-footed boobies (<it>S. nebouxii</it>). Phylogenetic analysis suggested that the duplicated control regions are predominantly evolving in concert; however, approximately 51 base pairs at the 5' end of CR1 and CR2 exhibited a discordant phylogenetic signal and appeared to be evolving independently.</p> <p>Conclusions</p> <p>Both the structure of the duplicated region and the conflicting phylogenetic signals are remarkably similar to a pattern found in <it>Thalassarche </it>albatrosses, which are united with boobies in a large clade that includes all procellariiform and most pelecaniform seabirds. Therefore we suggest that concerted evolution of duplicated control regions either is taxonomically widespread within seabirds, or that it has evolved many times.</p

Cryptic species and independent origins of allochronic populations within a seabird species complex (Hydrobates spp.)

Humans are inherently biased towards naming species based on morphological differences, which can lead to reproductively isolated species being mistakenly classified as one if they are morphologically similar. Recognising cryptic diversity is needed to understand drivers of speciation fully, and for accurate estimates of global biodiversity and assessments for conservation. We investigated cryptic species across the range of band-rumped storm-petrels (Hydrobates spp.): highly pelagic, nocturnal seabirds that breed on tropical and sub-tropical islands in the Atlantic and Pacific Oceans. In many breeding colonies, band-rumped storm-petrels have sympatric but temporally isolated (allochronic) populations; we sampled all breeding locations and allochronic populations. Using mitochondrial control region sequences from 754 birds, cytochrome b sequences from 69 birds, and reduced representation sequencing of the nuclear genomes of 133 birds, we uncovered high levels of genetic structuring. Population genomic analyses revealed up to seven unique clusters, and phylogenomic reconstruction showed that these represent seven monophyletic groups. We uncovered up to six independent breeding season switches across the phylogeny, spanning the continuum from genetically undifferentiated temporal populations to full allochronic species. Thus, band-rumped storm-petrels encompass multiple cryptic species, with non-geographic barriers potentially comprising strong barriers to gene flow

Relative Alignment between the Magnetic Field and Molecular Gas Structure in the Vela C Giant Molecular Cloud Using Low- and High-density Tracers

We compare the magnetic field orientation for the young giant molecular cloud Vela C inferred from 500 μm polarization maps made with the BLASTPol balloon-borne polarimeter to the orientation of structures in the integrated line emission maps from Mopra observations. Averaging over the entire cloud we find that elongated structures in integrated line-intensity or zeroth-moment maps, for low-density tracers such as 12CO and 13CO J → 1 – 0, are statistically more likely to align parallel to the magnetic field, while intermediate- or high-density tracers show (on average) a tendency for alignment perpendicular to the magnetic field. This observation agrees with previous studies of the change in relative orientation with column density in Vela C, and supports a model where the magnetic field is strong enough to have influenced the formation of dense gas structures within Vela C. The transition from parallel to no preferred/perpendicular orientation appears to occur between the densities traced by 13CO and by C18O J → 1 – 0. Using RADEX radiative transfer models to estimate the characteristic number density traced by each molecular line, we find that the transition occurs at a molecular hydrogen number density of approximately 103 cm−3. We also see that the Centre Ridge (the highest column density and most active star-forming region within Vela C) appears to have a transition at a lower number density, suggesting that this may depend on the evolutionary state of the cloud

Future directions in conservation research on petrels and shearwaters

Shearwaters and petrels (hereafter petrels) are highly adapted seabirds that occur across all the world's oceans. Petrels are a threatened seabird group comprising 124 species. They have bet-hedging life histories typified by extended chick rearing periods, low fecundity, high adult survival, strong philopatry, monogamy and long-term mate fidelity and are thus vulnerable to change. Anthropogenic alterations on land and at sea have led to a poor conservation status of many petrels with 52 (42%) threatened species based on IUCN criteria and 65 (52%) suffering population declines. Some species are well-studied, even being used as bioindicators of ocean health, yet for others there are major knowledge gaps regarding their breeding grounds, migratory areas or other key aspects of their biology and ecology. We assembled 38 petrel conservation researchers to summarize information regarding the most important threats according to the IUCN Red List of threatened species to identify knowledge gaps that must be filled to improve conservation and management of petrels. We highlight research advances on the main threats for petrels (invasive species at breeding grounds, bycatch, overfishing, light pollution, climate change, and pollution). We propose an ambitious goal to reverse at least some of these six main threats, through active efforts such as restoring island habitats (e.g., invasive species removal, control and prevention), improving policies and regulations at global and regional levels, and engaging local communities in conservation efforts

The Effects of Weather on Avian Growth and Implications for Adaptation to Climate Change

International audienceClimate change is forecasted to generate a range of evolutionary changes and plastic responses. One important aspect of avian responses to climate change is how weather conditions may change nestling growth and development. Early life growth is sensitive to environmental effects and can potentially have long-lasting effects on adult phenotypes and fitness. A detailed understanding of both how and when weather conditions affect the entire growth trajectory of a nestling may help predict population changes in phenotypes and demography under climate change. This review covers three main topics on the impacts of weather variation (air temperature, rainfall, wind speed, solar radiation) on nestling growth. Firstly, we highlight why understanding the effects of weather on nestling growth might be important in understanding adaptation to, and population persistence in, environments altered by climate change. Secondly, we review the documented effects of weather variation on nestling growth curves. We investigate both altricial and precocial species, but we find a limited number of studies on precocial species in the wild. Increasing temperatures and rainfall have mixed effects on nestling growth, while increasing windspeeds tend to have negative impacts on the growth rate of open cup nesting species. Thirdly, we discuss how weather variation might affect the evolution of nestling growth traits and suggest that more estimates of the inheritance of and selection acting on growth traits in natural settings are needed to make evolutionary predictions. We suggest that predictions will be improved by considering concurrently changing selection pressures like urbanization. The importance of adaptive plastic or evolutionary changes in growth may depend on where a species or population is located geographically and the species’ life-history. Detailed characterization of the effects of weather on growth patterns will help answer whether variation in avian growth frequently plays a role in adaption to climate change

Alldat

Data used for the primary analyses of black guillemot phenology

Pruned Pedigree BLGU

Pedigree used in the estimation of heritability of phenology in black guillemot

Environmental conditions variably affect growth across the breeding season in a subarctic seabird

International audiencePredicting the impacts of changing environments on phenotypes in wild populations remains a challenge. Growth, a trait that frequently influences fitness, is difficult to study as it is influenced by many environmental variables. To address this, we used a sliding window approach to determine the time-windows when sea-surface and air temperatures have the potential to affect growth of black-legged kittiwakes (Rissa tridactyla) on a colony in the Northeast Pacific. We examined environmental drivers influencing nestling growth using data from a long-term (21-year) study, that food supplements a portion of the colony. The associations between kittiwake growth and climatic conditions in our study indicated that warmer environmental conditions can both positively and negatively impact nestling growth parameters depending on hatching order. We found that first-hatched nestlings had a heavier maximum mass under warm air temperatures and cold sea conditions. Warmer air temperatures negatively affected the second-hatched nestling in a brood. However, when air temperatures were warm, warmer sea-surface temperatures predicted heavy, fast-growing second-hatched nestlings in contrast to what we observed for first-hatched nestlings. Food supplementation alleviated the temperature effects, and competition among nestlings influenced how strongly a variable affected growth. We identified windows that might indicate specific biological pathways through which environmental variation affected growth directly or indirectly. Overall, our windows suggest that nestlings in shared nests will be most affected by warming conditions

Shifting environmental predictors of phenotypes under climate change: a case study of growth in high latitude seabirds

Climate change is altering species' traits across the globe. To predict future trait changes and understand the consequences of those changes, we need to know the environmental drivers of phenotypic change. In the present study, we use multi‐decadal long datasets to determine periods of within‐year environmental variation that predict growth of three seabird species. We evaluate whether these periods changed over time and use them to predict future growth under climate change. We find that predictions of trait change could be improved by considering that 1) the timing of environmental factors used to predict traits (predictive‐environmental features) can change over time, and 2) the type of predictive‐environmental features can change over time. We find evidence of changes in the timing of environmental predictors in all populations studied and evidence for a change in the type of predictor in the studied Arctic murre population. Environmental models of growth predict that warming conditions will decrease growth rates and bird body sizes in two species (black‐legged kittiwake Rissa tridactyla and glaucous‐winged gull Larus Larus glaucescens ), but not the third (thick‐billed murre Uria lomvia ). Consequently, climate change is likely to decrease fledging rates in the gulls and kittiwakes. Further, we find that sea ice‐cover historically predicted murre chick growth well, but no longer does – instead air temperature is now a better predictor of murre growth. Our study highlights a need to investigate whether environmental determinants of trait variation commonly shift in a changing climate and whether such changes have implications for adaptation to novel environments