Teaching Excellence: A Reaction to the Smith Commission Report and its Effects

This paper has been written partially in response to the Smith Commission Report, and partially in response to the reactions the report has elicited already. The Smith Commission Report voiced many valid concerns about teaching excellence; however, many of the so-called "innovations" that have been developed in answer to Stuart Smith's call for teaching excellence are, in fact, little different from those techniques implemented under the auspices of the Ontario Universities Program for Institutional Development (OUPID) in the 1960's and early 1970's. This being the case, the authors feel that the most likely result will be a similar lack of success. It is, therefore, our suggestion that an attempt ought to be made to change the infrastructure of the university sys- tem so that it supports good teaching and research with equal measure. This, above all else, should lead to real improvements in the quality of teaching

Applying unsupervised learning to resolve evolutionary histories and explore the galaxy-halo connection in IllustrisTNG

We examine the effectiveness of identifying distinct evolutionary histories in IllustrisTNG-100 galaxies using unsupervised machine learning with Gaussian Mixture Models. We focus on how clustering compressed metallicity histories and star formation histories produces subpopulations of galaxies with distinct evolutionary properties (for both halo mass assembly and merger histories). By contrast, clustering with photometric colours fail to resolve such histories. We identify several populations of interest that reflect a variety of evolutionary scenarios supported by the literature. Notably, we identify a population of galaxies inhabiting the upper-red sequence, M* > 1010M⊙ that has a significantly higher ex-situ merger mass fraction present at fixed masses, and a star formation history that has yet to fully quench, in contrast to an overlapping, satellite-dominated population along the red sequence, which is distinctly quiescent. Extending the clustering to study four clusters instead of three further divides quiescent galaxies, while star forming ones are mostly contained in a single cluster, demonstrating a variety of supported pathways to quenching. In addition to these populations, we identify a handful of populations from our other clusters that are readily applicable to observational surveys, including a population related to post starburst (PSB) galaxies, allowing for possible extensions of this work in an observational context, and to corroborate results within the IllustrisTNG ecosystem.PostprintPeer reviewe

Micrometer-sized Water Ice Particles for Planetary Science Experiments: Influence of Surface Structure on Collisional Properties

Models and observations suggest that ice-particle aggregation at and beyond the snowline dominates the earliest stages of planet formation, which therefore is subject to many laboratory studies. However, the pressure–temperature gradients in protoplanetary disks mean that the ices are constantly processed, undergoing phase changes between different solid phases and the gas phase. Open questions remain as to whether the properties of the icy particles themselves dictate collision outcomes and therefore how effectively collision experiments reproduce conditions in protoplanetary environments. Previous experiments often yielded apparently contradictory results on collision outcomes, only agreeing in a temperature dependence setting in above ≈210 K. By exploiting the unique capabilities of the NIMROD neutron scattering instrument, we characterized the bulk and surface structure of icy particles used in collision experiments, and studied how these structures alter as a function of temperature at a constant pressure of around 30 mbar. Our icy grains, formed under liquid nitrogen, undergo changes in the crystalline ice-phase, sublimation, sintering and surface pre-melting as they are heated from 103 to 247 K. An increase in the thickness of the diffuse surface layer from ≈10 to ≈30 Å (≈2.5 to 12 bilayers) proves increased molecular mobility at temperatures above ≈210 K. Because none of the other changes tie-in with the temperature trends in collisional outcomes, we conclude that the surface pre-melting phenomenon plays a key role in collision experiments at these temperatures. Consequently, the pressure–temperature environment, may have a larger influence on collision outcomes than previously thought

Linguistics

Contains reports on six research projects.National Institutes of Health (Grant MH-04737-03)National Science Foundation (Grant G-16526)National Aeronautics and Space Administration (Grant NsG-496)United States Air Force, Electronic Systems Division (Contract AF19(628)-2487

10. Effect of insecticide-treated bed nets on the dynamics of multiple Plasmodium falciparum infections

The rates of acquisition and loss of individual genotypes belonging to the FC27 family of the Plasmodium falciparum merozoite surface protein 2 (msp2) gene were studied in 120 children aged 5 months to 2·5 years, in a randomized controlled trial of insecticide-treated bed nets (ITNs) in Kiberege village, Tanzania. Analysis of longitudinal changes in positivity for individual alleles in samples collected at intervals of one month indicated that the average duration of infections, allowing for undetected parasite genotypes, was 73 d in those aged <18 months and 160 d in children aged ≥18 months, consistent with a shift from acute to chronic infection with age. Overall, 51% of genotypes infecting the host were estimated to be detected by polymerase chain reaction-restriction fragment length polymorphism analysis in any one sample of 0·5 μL of packed peripheral blood cells. In children less than 18 months old this sensitivity was 61% (SE = 6%) compared with 41% (SE = 6%) in older children. Conversely, the rate of appearance of new parasite genotypes was higher in children <18 months of age than in older children, but this partly reflected the difference in sensitivity. The overall incidence of new infections was estimated to be reduced by 17% in ITN users. There was no statistically significant difference between users and non-users in observed infection multiplicity, sensitivity, recovery rate, or estimated infection rates for individual alleles. This suggests that, in areas of high P. falciparum endemicity, ITNs have little effect on the establishment of chronic malaria infectio

High sensitivity nanoparticle detection using optical microcavities

We demonstrate a highly sensitive nanoparticle and virus detection method by using a thermal-stabilized reference interferometer in conjunction with an ultrahigh-Q microcavity. Sensitivity is sufficient to resolve shifts caused by binding of individual nanobeads in solution down to a record radius of 12.5 nm, a size approaching that of single protein molecules. A histogram of wavelength shift versus nanoparticle radius shows that particle size can be inferred from shift maxima. Additionally, the signal-to-noise ratio for detection of Influenza A virus is enhanced to 38:1 from the previously reported 3:1. The method does not use feedback stabilization of the probe laser. It is also observed that the conjunction of particle-induced backscatter and optical-path-induced shifts can be used to enhance detection signal-to-noise

Evolution of population with sexual and asexual reproduction in changing environment

Using a lattice model based on Monte Carlo simulations, we study the role of the reproduction pattern on the fate of an evolving population. Each individual is under the selection pressure from the environment and random mutations. The habitat ("climate") is changing periodically. Evolutions of populations following two reproduction patterns are compared, asexual and sexual. We show, via Monte Carlo simulations, that sexual reproduction by keeping more diversified populations gives them better chances to adapt themselves to the changing environment. However, in order to obtain a greater chance to mate, the birth rate should be high. In the case of low birth rate and high mutation probability there is a preference for the asexual reproduction.Comment: 11 pages including figs., for Int. J. Mod. Phys. C 15, issue 2 (2004

Characterizing Scales of Genetic Recombination and Antibiotic Resistance in Pathogenic Bacteria Using Topological Data Analysis

Pathogenic bacteria present a large disease burden on human health. Control of these pathogens is hampered by rampant lateral gene transfer, whereby pathogenic strains may acquire genes conferring resistance to common antibiotics. Here we introduce tools from topological data analysis to characterize the frequency and scale of lateral gene transfer in bacteria, focusing on a set of pathogens of significant public health relevance. As a case study, we examine the spread of antibiotic resistance in Staphylococcus aureus. Finally, we consider the possible role of the human microbiome as a reservoir for antibiotic resistance genes.Comment: 12 pages, 6 figures. To appear in AMT 2014 Special Session on Advanced Methods of Interactive Data Mining for Personalized Medicin