Expression of major photosynthetic and salt-resistance genes in invasive reed lineages grown under elevated CO2 and temperature

It is important to investigate the molecular causes of the variation in ecologically important traits to fully understand phenotypic responses to climate change. In the Mississippi River Delta, two distinct, sympatric invasive lineages of common reed (Phragmites australis) are known to differ in several ecophysiological characteristics and are expected to become more salt resistant due to increasing atmospheric CO2 and temperature. We investigated whether different patterns of gene expression can explain their ecophysiological differences and increased vigor under future climatic conditions. We compared the transcript abundance of photosynthetic genes of the Calvin cycle (Rubisco small subunit, RbcS; Phosphoglycerate kinase, PGK; Phosphoribulokinase, PRK), genes related with salt transport (Na+/H+ antiporter, PhaNHA) and oxidative stress response genes (Manganese Superoxide dismutase, MnSOD; Glutathione peroxidase, GPX), and the total aboveground biomass production between two genotypes representing the two lineages. The two genotypes (Delta-type, Mediterranean lineage, and EU-type, Eurasian lineage) were grown under an ambient and a future climate scenario with simultaneously elevated CO2 and temperature, and under two different soil salinities (0‰ or 20‰). We found neither differences in the aboveground biomass production nor the transcript abundances of the two genotypes, but soil salinity significantly affected all the investigated parameters, often interacting with the climatic conditions. At 20‰ salinity, most genes were higher expressed in the future than in the ambient climatic conditions. Higher transcription of the genes suggests higher abundance of the protein they code for, and consequently increased photosynthate production, improved stress responses, and salt exclusion. Therefore, the higher expression of these genes most likely contributed to the significantly ameliorated salinity impact on the aboveground biomass production of both P. australis genotypes under elevated temperature and CO2. Although transcript abundances did not explain differences between the lineages, they correlated with the increased vigor of both lineages under anticipated future climatic conditions. Two sympatric, highly invasive lineages of Phragmites australis from North America differ in their ecophysiological responses to salinity and climate, and differences in gene expression may cause these different phenotypic traits. Under a future climatic scenario and high soil salinity, the expression of photosynthetic and salt-stress related genes was increased in both lineages, relative to the ambient climate, but the phenotypic differences between the lineages were not explained by the gene expression. Similar changes in gene expression may therefore facilitate salt resistance and an increased invasive vigour of both reed lineages under the changing climate

Effects of elevated carbon dioxide and climate change on biomass and nutritive value of Kyasuwa (Cenchrus pedicellatus Trin.)

Atmospheric carbon dioxide enrichment enhances plant growth and development and may alter the nutritive value of grasses. The objective of this study was to evaluate growth, biomass partitioning and nutritive value of Kyasuwa under combinations of atmospheric CO2 concentrations, watering and fertilization treatments. Plants were grown in two greenhouse chambers; with ambient (aCO2; 400 ppm) and elevated CO2 (eCO2; 950 ppm), two watering and three fertilization regimes. Elevated CO2 reduced stomatal conductance by 40%, root to shoot ratio by 8%, leaf to stem ratio (L:S) by 3%, protein content by 14% and Acid Detergent Lignin (ADL) by 23% with no significant changes in total biomass and C/N ratio however, slight increases in leaf area (2%) and Acid Detergent Fiber (ADF) by 4%. Higher fertilization resulted in increased biomass parameters only in well-watered plants while; a lower C/N ratio was recorded with higher fertilization. The L:S ratio was decreased with fertilization while ADL was increased at higher fertilization in well-watered plants. Interactive effects were recorded for ADF content and shoot height. Future eCO2 will be unfavorable to Kyasuwa growth and biomass production making them less competitive with a reduced nutritive value in drought prone and infertile soils

Biomethane Yield from Different European Phragmites australis Genotypes, Compared with Other Herbaceous Wetland Species Grown at Different Fertilization Regimes

Phragmites australis, Typha latifolia, T. angustifolia and Arundo donax are tall wetland graminoids with the potential to replace fossil fuels under sustainable cultivation conditions. We investigated the biomethane (CH4) production of these four species, including four different genotypes of P. australis, which represent the high intraspecific diversity of European reed. All plants were grown under three different macronutrient supplies (no nutrients added, an equivalent of 75 kg N ha−1 year−1 added and an equivalent of 500 kg N ha−1 year−1 added). Biomethane production was measured in four independent batch digestion tests. Across all experiments, fertilization regime had little effect on CH4 yield, which was on average 222 ± 31 L kg−1 volatile solids (VS). The lowest yield was produced by T. angustifolia (140 L kgVS−1) receiving no nutrients, while the highest yield was produced by A. donax (305 L kgVS−1) in the highest nutrient treatment. The intraspecific diversity of P. australis did not affect biomethane production. All P. australis genotypes produced on average 226 ± 19 L CH4 kgVS−1, which, although high, was still lower than conventional biogas species. The biomass production of P. australis was less increased by fertilization than that of Typha sp. and A. donax, but all species had similar biomass without fertilization

Cosmopolitan Species As Models for Ecophysiological Responses to Global Change: The Common Reed \u3cem\u3ePhragmites australis\u3c/em\u3e

Phragmites australis is a cosmopolitan grass and often the dominant species in the ecosystems it inhabits. Due to high intraspecific diversity and phenotypic plasticity, P. australis has an extensive ecological amplitude and a great capacity to acclimate to adverse environmental conditions; it can therefore offer valuable insights into plant responses to global change. Here we review the ecology and ecophysiology of prominent P. australis lineages and their responses to multiple forms of global change. Key findings of our review are that: (1) P. australis lineages are well-adapted to regions of their phylogeographic origin and therefore respond differently to changes in climatic conditions such as temperature or atmospheric CO2; (2) each lineage consists of populations that may occur in geographically different habitats and contain multiple genotypes; (3) the phenotypic plasticity of functional and fitness-related traits of a genotype determine the responses to global change factors; (4) genotypes with high plasticity to environmental drivers may acclimate or even vastly expand their ranges, genotypes of medium plasticity must acclimate or experience range-shifts, and those with low plasticity may face local extinction; (5) responses to ancillary types of global change, like shifting levels of soil salinity, flooding, and drought, are not consistent within lineages and depend on adaptation of individual genotypes. These patterns suggest that the diverse lineages of P. australis will undergo intense selective pressure in the face of global change such that the distributions and interactions of co-occurring lineages, as well as those of genotypes within-lineages, are very likely to be altered. We propose that the strong latitudinal clines within and between P. australis lineages can be a useful tool for predicting plant responses to climate change in general and present a conceptual framework for using P. australis lineages to predict plant responses to global change and its consequences

Cosmopolitan Species as Models for Ecophysiological Responses to Global Change: The Common Reed Phragmites australis

Phragmites australis is a cosmopolitan grass and often the dominant species in the ecosystems it inhabits. Due to high intraspecific diversity and phenotypic plasticity, P. australis has an extensive ecological amplitude and a great capacity to acclimate to adverse environmental conditions; it can therefore offer valuable insights into plant responses to global change. Here we review the ecology and ecophysiology of prominent P. australis lineages and their responses to multiple forms of global change. Key findings of our review are that: (1) P. australis lineages are well-adapted to regions of their phylogeographic origin and therefore respond differently to changes in climatic conditions such as temperature or atmospheric CO2; (2) each lineage consists of populations that may occur in geographically different habitats and contain multiple genotypes; (3) the phenotypic plasticity of functional and fitness-related traits of a genotype determine the responses to global change factors; (4) genotypes with high plasticity to environmental drivers may acclimate or even vastly expand their ranges, genotypes of medium plasticity must acclimate or experience range-shifts, and those with low plasticity may face local extinction; (5) responses to ancillary types of global change, like shifting levels of soil salinity, flooding, and drought, are not consistent within lineages and depend on adaptation of individual genotypes. These patterns suggest that the diverse lineages of P. australis will undergo intense selective pressure in the face of global change such that the distributions and interactions of co-occurring lineages, as well as those of genotypes within-lineages, are very likely to be altered. We propose that the strong latitudinal clines within and between P. australis lineages can be a useful tool for predicting plant responses to climate change in general and present a conceptual framework for using P. australis lineages to predict plant responses to global change and its consequences

Non-standard neutrino interactions in IceCube

Non-standard neutrino interactions (NSI) may arise in various types of new physics. Their existence would change the potential that atmospheric neutrinos encounter when traversing Earth matter and hence alter their oscillation behavior. This imprint on coherent neutrino forward scattering can be probed using high-statistics neutrino experiments such as IceCube and its low-energy extension, DeepCore. Both provide extensive data samples that include all neutrino flavors, with oscillation baselines between tens of kilometers and the diameter of the Earth. DeepCore event energies reach from a few GeV up to the order of 100 GeV - which marks the lower threshold for higher energy IceCube atmospheric samples, ranging up to 10 TeV. In DeepCore data, the large sample size and energy range allow us to consider not only flavor-violating and flavor-nonuniversal NSI in the μ−τ sector, but also those involving electron flavor. The effective parameterization used in our analyses is independent of the underlying model and the new physics mass scale. In this way, competitive limits on several NSI parameters have been set in the past. The 8 years of data available now result in significantly improved sensitivities. This improvement stems not only from the increase in statistics but also from substantial improvement in the treatment of systematic uncertainties, background rejection and event reconstruction

IceCube Search for Earth-traversing ultra-high energy Neutrinos

The search for ultra-high energy neutrinos is more than half a century old. While the hunt for these neutrinos has led to major leaps in neutrino physics, including the detection of astrophysical neutrinos, neutrinos at the EeV energy scale remain undetected. Proposed strategies for the future have mostly been focused on direct detection of the first neutrino interaction, or the decay shower of the resulting charged particle. Here we present an analysis that uses, for the first time, an indirect detection strategy for EeV neutrinos. We focus on tau neutrinos that have traversed Earth, and show that they reach the IceCube detector, unabsorbed, at energies greater than 100 TeV for most trajectories. This opens up the search for ultra-high energy neutrinos to the entire sky. We use ten years of IceCube data to perform an analysis that looks for secondary neutrinos in the northern sky, and highlight the promise such a strategy can have in the next generation of experiments when combined with direct detection techniques