MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects

BACKGROUND A current challenge of microRNA (miRNA) research is the identification of biologically relevant miRNA:target gene relationships. In plants, high miRNA:target gene complementarity has enabled accurate target predictions, and slicing of target mRNAs has facilitated target validation through rapid amplification of 5' cDNA ends (5'-RACE) analysis. Together, these approaches have identified more than 20 targets potentially regulated by the deeply conserved miR159 family in Arabidopsis, including eight MYB genes with highly conserved miR159 target sites. However, genetic analysis has revealed the functional specificity of the major family members, miR159a and miR159b is limited to only two targets, MYB33 and MYB65. Here, we examine the functional role of miR159 regulation for the other potential MYB target genes. RESULTS For these target genes, functional analysis failed to identify miR159 regulation that resulted in any major phenotypic impact, either at the morphological or molecular level. This appears to be mainly due to the quiescent nature of the remaining family member, MIR159c. Although its expression overlaps in a temporal and spatial cell-specific manner with a subset of these targets in anthers, the abundance of miR159c is extremely low and concomitantly a mir159c mutant displays no anther defects. Examination of potential miR159c targets with conserved miR159 binding sites found neither their spatial or temporal expression domains appeared miR159 regulated, despite the detection of miR159-guided cleavage products by 5'-RACE. Moreover, expression of a miR159-resistant target (mMYB101) resulted predominantly in plants that are indistinguishable from wild type. Plants that displayed altered morphological phenotypes were found to be ectopically expressing the mMYB101 transgene, and hence were misrepresentative of the in vivo functional role of miR159. CONCLUSIONS This study presents a novel explanation for a paradox common to plant and animal miRNA systems, where among many potential miRNA-target relationships usually only a few appear physiologically relevant. The identification of a quiescent miR159c:target gene regulatory module in anthers provides a likely rationale for the presence of conserved miR159 binding sites in many targets for which miR159 regulation has no obvious functional role. Remnants from the demise of such modules may lead to an overestimation of miRNA regulatory complexity when investigated using bioinformatic, 5'-RACE or transgenic approaches.RSA was funded by an ANU postgraduate scholarship and by a CSIRO Emerging Science Initiative. JL is the recipient of an ANU international student postgraduate scholarship. This research was supported by an Australian Research Council grant DP0773270

Long-term variability of CO2 and O in the Mars upper atmosphere from MRO radio science data

We estimate the annual variability of CO2 and O partial density using approximately 6years of Mars Reconnaissance Orbiter (MRO) radio science data from August 2006 to January 2012, which cover three full Martian years (from the northern hemisphere summer of 28 to the northern hemisphere summer of 31). These two elements are the dominant species at the MRO periapsis altitude, constituting about 70-80% of the total density. We report the recovered annual cycle of CO2 and the annual and seasonal cycle of O in the upper atmosphere. Although no other observations are available at those altitudes, our results are in good agreement with the density measurements of the Mars Express Spectroscopy for Investigation of Characteristics of the Atmosphere of Mars, which uses stellar occultations between 60 and 130km to determine the CO2 variability, and with the Mars Global Reference Atmospheric Model 2010 for the O annual and seasonal variabilities. Furthermore, the updated model provides more reasonable MRO drag coefficients (CD), which are estimated to absorb mismodeling in the atmospheric density prediction. The higher content of dust in the atmosphere due to dust storms increases the density, so the CDs should compensate for this effect. The correlation between the drag coefficient and the dust optical depth, measured by the Mars Odyssey Thermal Emission Imaging System (THEMIS) instrument, increases from 0.4 to 0.8 with the a priori and adjusted models, respectively. The trend of CDs not only confirms a substantial improvement in the prediction of the atmospheric density with the updated model but also provides useful information for local dust storms, near MRO periapsis, that cannot be measured by the opacity level since THEMIS does not always sample the southern hemisphere evenly

Kinetics and crystallization path of a Fe-based metallic glass alloy

The thermal stability and the quantification of the different transformation processes involved in the overall crystallization of the Fe50Cr15Mo14C15B6 amorphous alloy were investigated by several characterization techniques. Formation of various metastable and stable phases during the devitrification process in the sequence a-Fe, ¿-Cr6Fe18Mo5, M23(C,B)6, M7C3, ¿-Fe3Mo3C and FeMo2B2 (with M = Fe, Cr, Mo), was observed by in-situ synchrotron high energy X-ray diffraction and in-situ transmission electron microscopy. By combining these techniques with differential scanning calorimetry data, the crystallization states and their temperature range of stability under continuous heating were related with the evolution of the crystallized fraction and the phase sequence as a function of temperature, revealing structural and chemical details of the different transformation mechanisms.Postprint (published version

The Visual Categorization of Humanoid Movement as Natural

We examined naturalness judgements of movements generated by different control strategies with the goal of producing natural looking movements on humanoid robots and virtual humans. We displayed motion clips on both a humanoid robot and a computer graphic character. Fourteen synthetic motion generation algorithms were developed based onhuman motor production theories. Human movement was also motion captured. Experimental results relate the actuator bandwidth, the level of computational complexity in motion generation, and the perceived naturalness of motion. In Experiment 1 it was found that for the humanoid robot, low ratings of naturalness were obtained for rapid movement. However Experiment 2 indicated that this effect appeared to not be due to specific features of the motor production techniques but instead due to a movement artifact generated by the humanoid robot

On the proper reconstruction of complex dynamical systems spoilt by strong measurement noise

This article reports on a new approach to properly analyze time series of dynamical systems which are spoilt by the simultaneous presence of dynamical noise and measurement noise. It is shown that even strong external measurement noise as well as dynamical noise which is an intrinsic part of the dynamical process can be quantified correctly, solely on the basis of measured times series and proper data analysis. Finally real world data sets are presented pointing out the relevance of the new approach

Topography of the Moon from the Clementine Lidar

Range measurements from the lidar instrument carried aboard the Clementine spacecraft have been used to produce an accurate global topographic model of the Moon. This paper discusses the function of the lidar; the acquisition, processing, and filtering of observations to produce a global topographic model; and the determination of parameters that define the fundamental shape of the Moon. Our topographic model: a 72nd degree and order spherical harmonic expansion of lunar radii, is designated Goddard Lunar Topography Model 2 (GLTM 2). This topographic field has an absolute vertical accuracy of approximately 100 m and a spatial resolution of 2.5 deg. The field shows that the Moon can be described as a sphere with maximum positive and negative deviations of approx. 8 km, both occurring on the farside, in the areas of the Korolev and South Pole-Aitken (S.P.-Aitken) basins. The amplitude spectrum of the topography shows more power at longer wavelengths as compared to previous models, owing to more complete sampling of the surface, particularly the farside. A comparison of elevations derived from the Clementine lidar to control point elevations from the Apollo laser altimeters indicates that measured relative topographic heights generally agree to within approx. 200 in over the maria. While the major axis of the lunar gravity field is aligned in the Earth-Moon direction, the major axis of topography is displaced from this line by approximately 10 deg to the cast and intersects the farside 24 deg north of the equator. The magnitude of impact basin topography is greater than the lunar flattening (approx. 2 km) and equatorial ellipticity (approx. 800 m), which imposes a significant challenge to interpreting the lunar figure. The floors of mare basins are shown to lie close to an equipotential surface, while the floors of unflooded large basins, except for S.P.-Aitken, lie above this equipotential. The radii of basin floors are thus consistent with a hydrostatic mechanism for the absence of significant farside maria except for S.P.-Aitken, whose depth and lack of mare require significant internal compositional and/or thermal heterogeneity. A macroscale surface roughness map shows that roughness at length scales of 10(exp 1) - 10(exp 2) km correlates with elevation and surface age

Thyroid hormone uptake in cultured rat anterior pituitary cells: effects of energy status and bilirubin

Transport of thyroxine (T(4)) into the liver is inhibited in fasting and by bilirubin, a compound often accumulating in the serum of critically ill patients. We tested the effects of chronic and acute energy deprivation, bilirubin and its precursor biliverdin on the 15-min uptake of [(125)I]tri-iodothyronine ([(125)I]T(3)) and [(125)I]T(4) and on TSH release in rat anterior pituitary cells maintained in primary culture for 3 days. When cells were cultured and incubated in medium without glucose and glutamine to induce chronic energy deprivation, the ATP content was reduced by 45% (P<0. 05) and [(125)I]T(3) uptake by 13% (NS), but TSH release was unaltered. Preincubation (30 min) and incubation (15 min) with 10 microM oligomycin reduced ATP content by 51% (P<0.05) and 53% (P<0. 05) under energy-rich and energy-poor culture conditions respectively; [(125)I]T(3) uptake was reduced by 66% (P<0.05) and 64% (P<0.05). Neither bilirubin nor biliverdin (both 1-200 microM) affected uptake of [(125)I]T(3) or [(125)I]T(4). Bilirubin (1-50 microM) did not alter basal or TRH-induced TSH release. In conclusion, the absence of inhibitory effects of chronic energy deprivation and bilirubin on thyroid hormone uptake by pituitary cells supports the view that the transport is regulated differently than that in the liver

A 70th Degree Lunar Gravity Model (GLGM-2) from Clementine and other tracking data

A spherical harmonic model of the lunar gravity field complete to degree and order 70 has been developed from S band Doppler tracking data from the Clementine mission, as well as historical tracking data from Lunar Orbiters 1-5 and the Apollo 15 and 16 subsatellites. The model combines 361,000 Doppler observations from Clementine with 347,000 historical observations. The historical data consist of mostly 60-s Doppler with a noise of 0.25 to several mm/s. The Clementine data consist of mostly 10-s Doppler data, with a data noise of 0.25 mm/s for the observations from the Deep Space Network, and 2.5 mm/s for the data from a naval tracking station at Pomonkey, Maryland. Observations provided Clementine, provide the strongest satellite constraint on the Moon's low-degree field. In contrast the historical data, collected by spacecraft that had lower periapsis altitudes, provide distributed regions of high-resolution coverage within +/- 29 deg of the nearside lunar equator. To obtain the solution for a high-degree field in the absence of a uniform distribution of observations, we applied an a priori power law constraint of the form 15 x 10(exp -5)/sq l which had the effect of limiting the gravitational power and noise at short wavelengths. Coefficients through degree and order 18 are not significantly affected by the constraint, and so the model permits geophysical analysis of effects of the major basins at degrees 10-12. The GLGM-2 model confirms major features of the lunar gravity field shown in previous gravitational field models but also reveals significantly more detail, particularly at intermediate wavelengths (10(exp 3) km). Free-air gravity anomaly maps derived from the new model show the nearside and farside highlands to be gravitationally smooth, reflecting a state of isostatic compensation. Mascon basins (including Imbrium, Serenitatis, Crisium, Smythii, and Humorum) are denoted by gravity highs first recognized from Lunar Orbiter tracking. All of the major mascons are bounded by annuli of negative anomalies representing significant subsurface mass deficiencies. Mare Orientale appears as a minor mascon surrounded by a horseshoe-shaped gravity low centered on the Inner and Outer Rook rings that is evidence of significant subsurface structural heterogeneity. Although direct tracking is not available over a significant part of the lunar farside, GLGM-2 resolves negative anomalies that correlate with many farside basins, including South Pole-Aitken, Hertzsprung, Korolev, Moscoviense, Tsiolkovsky, and Freundlich-Sharonov

Novel pathogenic COX20 variants causing dysarthria, ataxia, and sensory neuropathy.

COX20/FAM36A encodes a mitochondrial complex IV assembly factor important for COX2 activation. Only one homozygous COX20 missense mutation has been previously described in two separate consanguineous families. We report four subjects with features that include childhood hypotonia, areflexia, ataxia, dysarthria, dystonia, and sensory neuropathy. Exome sequencing in all four subjects identified the same novel COX20 variants. One variant affected the splice donor site of intron-one (c.41A&gt;G), while the other variant (c.157+3G&gt;C) affected the splice donor site of intron-two. cDNA and protein analysis indicated that no full-length cDNA or protein was generated. These subjects expand the phenotype associated with COX20 deficiency