NITROGEN MANAGEMENT IN SOUTHEASTERN MINNESOTA

Crop Production/Industries,

Implementing vertex dynamics models of cell populations in biology within a consistent computational framework

The dynamic behaviour of epithelial cell sheets plays a central role during development, growth, disease and wound healing. These processes occur as a result of cell adhesion, migration, division, differentiation and death, and involve multiple processes acting at the cellular and molecular level. Computational models offer a useful means by which to investigate and test hypotheses about these processes, and have played a key role in the study of cell–cell interactions. However, the necessarily complex nature of such models means that it is difficult to make accurate comparison between different models, since it is often impossible to distinguish between differences in behaviour that are due to the underlying model assumptions, and those due to differences in the in silico implementation of the model. In this work, an approach is described for the implementation of vertex dynamics models, a discrete approach that represents each cell by a polygon (or polyhedron) whose vertices may move in response to forces. The implementation is undertaken in a consistent manner within a single open source computational framework, Chaste, which comprises fully tested, industrial-grade software that has been developed using an agile approach. This framework allows one to easily change assumptions regarding force generation and cell rearrangement processes within these models. The versatility and generality of this framework is illustrated using a number of biological examples. In each case we provide full details of all technical aspects of our model implementations, and in some cases provide extensions to make the models more generally applicable

Nestling diet, secondary sexual traits and fitness in the zebra finch

We examined the effect of nestling diet quality on a suite of physiological, morphological and life-history traits in adult male zebra finches,Taeniopygia guttata. Compared with birds reared on a supplemented diet, nestlings reared on a seed-only diet showed a reduced rate of growth and reduced cell-mediated immune function as measured by an in vivo response to aT lymphocyte-dependent mitogen. There were no differences between birds reared on the two diets in any of the following adult traits: body size, primary sexual traits (testes mass, numbers of stored sperm, sperm function, velocity and morphology), secondary sexual traits (beak colour and song rate), serological traits or immunological traits. The only differences we detected were a lower body mass and a greater proportion of individuals with plumage abnormalities among those reared on a seed-only diet (this latter effect was transient). The fact that male zebra finches reared on a seed-only diet were, as adults, virtually indistinguishable from those reared on a supple- mented diet, despite having reduced growth and immune function as nestlings, demonstrates that they subsequently compensated through the di¡erential allocation of resources. Our results indicate that differ- ential allocation is costly in terms of fitness since birds reared on a seed-only diet experienced a significantly greater mortality rate than those reared on a supplemented diet. This in turn suggests the existence of a trade-of between the development of traits important for reproduction, such as primary and secondary sexual traits and longevity

Seed coat colour development in black beans

Non-Peer ReviewedDry beans come in a wide variety of seed coat patterns and colours and the quality and value of the bean crop is largely determined by appearance and condition of the seed, particularly colour uniformity and stability. In western Canada, black bean is a significant portion of the crop. For some black bean varieties, the seed coat colour does not fully develop until the pod is mature. This may be the result of genotype, or environment, or both. In these cases, harvesting at plant maturity rather than at seed maturity can lead to a non-uniform crop sample in which the black beans are mixed with beans that have a purple or gray tinge. Full expression of seed coat colour is economically important as variable colour development may result in a 2-4 cent per pound discount. Seed coat colour is determined by the presence of anthocyanins and condensed tannins. In this experiment, we examined the timing of pigment deposition in the seed coat in relation to pod maturity for 5 black bean varieties (CDC Expresso, CDC Nighthawk, CDC Jet, AC Black Diamond, and T39) to determine if there is genetic variation for timing of seed coat colour development. If it is under genetic control, we will be able to breed for earlier colour development to ensure full colour expression at plant maturity

Evidence for a non-genomic action of testosterone in skeletal muscle which may improve athletic performance: Implications for the female athlete

This review will focus on the proposed second mode of testosterone action (now termed non-genomic) that appears to occur independently of the traditional transcriptional mechanism in mammalian skeletal muscle cells which may enhance skeletal muscle contractile properties. This mechanism of testosterone action differs from the traditional pathway, originating at the cell membrane, having a rapid onset of action, requiring second messengers to execute its effects and is insensitive to inhibitors of traditional androgen receptor action, transcription and protein synthesis. Importantly, unlike the traditional action of testosterone in skeletal muscle, this non-genomic pathway is shown to have a direct acute effect on calcium-dependent components important for the contractile process. The changes within the contractile apparatus may enhance the ability of the muscle to produce explosive power during athletic performance. Rapid increases in Inositol triphosphate mass and calcium release from the sarcoplasmic reticulum have been reported in rodent skeletal muscle cells, and a rapid androgen (dihydrotestosterone)- induced increase in peak force production has been recorded in intact rodent skeletal muscle fibre bundles while showing increases in the activity of the Ras/MAP/ERK mediated pathway. Because the non-genomic action of testosterone is enhanced during increases in exposure to testosterone and is acute in its action, implications for athletic performance are likely greater in females than males due to natural fluctuations in circulating testosterone levels during the female menstrual cycle, reproductive pathology, and changes induced by hormonal contraceptive methods. Research should be undertaken in humans to confirm a pathway for non-genomic testosterone action in human skeletal muscle. Specifically, relationships between testosterone fluctuations and physiological changes within skeletal muscle cells and whole muscle exercise performance need to be examined

Anomalous superfluid density in quantum critical superconductors

When a second-order magnetic phase transition is tuned to zero temperature by a non-thermal parameter, quantum fluctuations are critically enhanced, often leading to the emergence of unconventional superconductivity. In these `quantum critical' superconductors it has been widely reported that the normal-state properties above the superconducting transition temperature $T_c$ often exhibit anomalous non-Fermi liquid behaviors and enhanced electron correlations. However, the effect of these strong critical fluctuations on the superconducting condensate below $T_c$ is less well established. Here we report measurements of the magnetic penetration depth in heavy-fermion, iron-pnictide, and organic superconductors located close to antiferromagnetic quantum critical points showing that the superfluid density in these nodal superconductors universally exhibit, unlike the expected $T$-linear dependence, an anomalous 3/2 power-law temperature dependence over a wide temperature range. We propose that this non-integer power-law can be explained if a strong renormalization of effective Fermi velocity due to quantum fluctuations occurs only for momenta $\bm{k}$ close to the nodes in the superconducting energy gap $\Delta(\bm{k})$. We suggest that such `nodal criticality' may have an impact on low-energy properties of quantum critical superconductors.Comment: Main text (5 pages, 3 figures) + Supporting Information (3 pages, 4 figures). Published in PNAS Early Edition on February 12, 201

Theory of phonon-drag thermopower of extrinsic semiconducting single-wall carbon nanotubes and comparison with previous experimental data

A theoretical model for the calculation of the phonon-drag thermopower, $S^{g}$, in degenerately doped semiconducting single-wall carbon nanotubes (SWCNTs) is proposed. Detailed calculations of $S^{g}$ are performed as a function of temperature, tube radius and position of the Fermi level. We derive a simple analytical expression for $S^{g}$ that can be utilized to determine the free carrier density in doped nanotubes. At low temperatures $S^{g}$ shows an activated behavior characteristic of the one-dimensional (1D) character of carriers. Screening effects are taken into account and it is found that they dramatically reduce the magnitude of $S^{g}$. Our results are compared with previous published experimental data in bulk p-doped SWCNT materials. Excellent agreement is obtained in the temperature range 10-200 K for a consistent set of parameters. This is a striking result in view of the complexity of these systems.Comment: 21 pages, 6 figures. This version has been accepted for publication in Phys. Rev.

Break up of returning plasma after the 7 June 2011 filament eruption by Rayleigh-Taylor instabilities

A prominence eruption on 7 June 2011 produced spectacular curtains of plasma falling through the lower corona. At the solar surface they created an incredible display of extreme ultraviolet brightenings. The aim is to identify and analyze some of the local instabilities which produce structure in the falling plasma. The structures were investigated using SDO/AIA 171A and 193A images in which the falling plasma appeared dark against the bright coronal emission. Several instances of the Rayleigh-Taylor instability were investigated. In two cases the Alfven velocity associated with the dense plasma could be estimated from the separation of the Rayleigh-Taylor fingers. A second type of feature, which has the appearance of self-similar branching horns, is also discussed.Comment: 6 pages, 7 figures, submitted A&A. Movies are at http://www.mps.mpg.de/data/outgoing/innes/arcs_movie.avi and http://www.mps.mpg.de/data/outgoing/innes/horns_movie.av